prot_Ecto-sp13_S_contig1333.2667.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1333.2667.1
Unique Nameprot_Ecto-sp13_S_contig1333.2667.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length180
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1333.2667.1 vs. uniprot
Match: D8LB19_ECTSI (Similar to RING finger protein 122 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB19_ECTSI)

HSP 1 Score: 213 bits (543), Expect = 3.740e-61
Identity = 135/185 (72.97%), Postives = 140/185 (75.68%), Query Frame = 0 
Query:    1 MAVSLGLAPVTRSDVAAAAEDRKRRAASSLRVAMSGYGAGGAEGVQXXXXXXXXXXSAASSAAGRQDAAIFQFGSGKPSPVERQRXXXXXXXXXSAEASRRYRPPTSAAWLNGAASGDWLTEKSGEGASSHIAAQEAAGALGRPSTTARGTAAAA-----AASGRRVASGHRSPSGSLVSARLAS 180
            MAVSLGLAPVTRSDVAAAAEDRKRRAA+SLRV+MSG GAGGAEGV+      XXXX        RQDAA FQFGSGKPSPVERQR         S E SRR RPPTSA WL+GAASGDWL +KSGEGASSH AAQEAAGA GRPSTTARG            S RRVASGHRSPSGSLVSARLAS
Sbjct:  372 MAVSLGLAPVTRSDVAAAAEDRKRRAAASLRVSMSGAGAGGAEGVEGYGKAGXXXXXXXXXXXXRQDAATFQFGSGKPSPVERQRRRQQQPATSSVEGSRRDRPPTSATWLDGAASGDWLADKSGEGASSHAAAQEAAGAFGRPSTTARGXXXXXXXXXXVGSSRRVASGHRSPSGSLVSARLAS 556
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BLAST of mRNA_Ecto-sp13_S_contig1333.2667.1 vs. uniprot
Match: A0A6H5L8B3_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8B3_9PHAE)

HSP 1 Score: 181 bits (459), Expect = 1.370e-49
Identity = 127/181 (70.17%), Postives = 132/181 (72.93%), Query Frame = 0 
Query:    1 MAVSLGLAPVTRSDVAAAAEDRKRRAASSLRVAMSGYGAGGAEGVQXXXXXXXXXXSAASSAAGRQDAAIFQFGSGKPSPVERQRXXXXXXXXXSAEASRRYRPPTSAAWLNGAASGDWLTEKSGEGASSHIAAQEAAGALGRPSTTARGTAAAAAASG-RRVASGHRSPSGSLVSARLAS 180
            MAVSLGLAPVTR DVAAAAEDRKRRAAS LRVAMSG  AGGAEGV+          SAASSAAGRQDAAIFQF SGKPSPVERQRXXXXXXXXX  EA RR RPPTSAAWL+GA+SGDWLT +SGEGASSH                             RR+ASGHRSPSGSLVSARLAS
Sbjct:  373 MAVSLGLAPVTRGDVAAAAEDRKRRAASLLRVAMSGSRAGGAEGVEGYGKAGGGEASAASSAAGRQDAAIFQFESGKPSPVERQRXXXXXXXXXXXEAMRRERPPTSAAWLDGASSGDWLTNRSGEGASSHAXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRIASGHRSPSGSLVSARLAS 553
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1333.2667.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LB19_ECTSI3.740e-6172.97Similar to RING finger protein 122 n=1 Tax=Ectocar... [more]
A0A6H5L8B3_9PHAE1.370e-4970.17RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..180
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 11..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..10

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1333contigEcto-sp13_S_contig1333:7696..8235 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1333.2667.1mRNA_Ecto-sp13_S_contig1333.2667.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1333 7671..8235 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1333.2667.1 ID=prot_Ecto-sp13_S_contig1333.2667.1|Name=mRNA_Ecto-sp13_S_contig1333.2667.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=180bp
MAVSLGLAPVTRSDVAAAAEDRKRRAASSLRVAMSGYGAGGAEGVQGYGK
AGAGGVSAASSAAGRQDAAIFQFGSGKPSPVERQRRRQQQPATSSAEASR
RYRPPTSAAWLNGAASGDWLTEKSGEGASSHIAAQEAAGALGRPSTTARG
TAAAAAASGRRVASGHRSPSGSLVSARLAS
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