mRNA_Ecto-sp13_S_contig1333.2667.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1333.2667.1
Unique NamemRNA_Ecto-sp13_S_contig1333.2667.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1333.2667.1 vs. uniprot
Match: D8LB19_ECTSI (Similar to RING finger protein 122 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB19_ECTSI)

HSP 1 Score: 226 bits (577), Expect = 9.020e-66
Identity = 143/193 (74.09%), Postives = 148/193 (76.68%), Query Frame = 2 
Query:    2 PPKATATEMAVSLGLAPVTRSDVAAAAEDRKRRAASSLRVAMSGYGAGGAEGVQXXXXXXXXXXSAASSAAGRQDAAIFQFGSGKPSPVERQRXXXXXXXXXSAEASRRYRPPTSAAWLNGAASGDWLTEKSGEGASSHIAAQEAAGALGRPSTTARGTAAAA-----AASGRRVASGHRSPSGSLVSARLAS 565
            PPKATATEMAVSLGLAPVTRSDVAAAAEDRKRRAA+SLRV+MSG GAGGAEGV+      XXXX        RQDAA FQFGSGKPSPVERQR         S E SRR RPPTSA WL+GAASGDWL +KSGEGASSH AAQEAAGA GRPSTTARG            S RRVASGHRSPSGSLVSARLAS
Sbjct:  364 PPKATATEMAVSLGLAPVTRSDVAAAAEDRKRRAAASLRVSMSGAGAGGAEGVEGYGKAGXXXXXXXXXXXXRQDAATFQFGSGKPSPVERQRRRQQQPATSSVEGSRRDRPPTSATWLDGAASGDWLADKSGEGASSHAAAQEAAGAFGRPSTTARGXXXXXXXXXXVGSSRRVASGHRSPSGSLVSARLAS 556
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BLAST of mRNA_Ecto-sp13_S_contig1333.2667.1 vs. uniprot
Match: A0A6H5L8B3_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8B3_9PHAE)

HSP 1 Score: 194 bits (493), Expect = 4.160e-54
Identity = 135/189 (71.43%), Postives = 140/189 (74.07%), Query Frame = 2 
Query:    2 PPKATATEMAVSLGLAPVTRSDVAAAAEDRKRRAASSLRVAMSGYGAGGAEGVQXXXXXXXXXXSAASSAAGRQDAAIFQFGSGKPSPVERQRXXXXXXXXXSAEASRRYRPPTSAAWLNGAASGDWLTEKSGEGASSHIAAQEAAGALGRPSTTARGTAAAAAASG-RRVASGHRSPSGSLVSARLAS 565
            PPKATATEMAVSLGLAPVTR DVAAAAEDRKRRAAS LRVAMSG  AGGAEGV+          SAASSAAGRQDAAIFQF SGKPSPVERQRXXXXXXXXX  EA RR RPPTSAAWL+GA+SGDWLT +SGEGASSH                             RR+ASGHRSPSGSLVSARLAS
Sbjct:  365 PPKATATEMAVSLGLAPVTRGDVAAAAEDRKRRAASLLRVAMSGSRAGGAEGVEGYGKAGGGEASAASSAAGRQDAAIFQFESGKPSPVERQRXXXXXXXXXXXEAMRRERPPTSAAWLDGASSGDWLTNRSGEGASSHAXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRIASGHRSPSGSLVSARLAS 553
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1333.2667.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LB19_ECTSI9.020e-6674.09Similar to RING finger protein 122 n=1 Tax=Ectocar... [more]
A0A6H5L8B3_9PHAE4.160e-5471.43RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1333contigEcto-sp13_S_contig1333:7671..8235 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score214.2
Seed ortholog evalue5.2e-53
Seed eggNOG ortholog2880.D8LB19
Model size567
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsKOG0800@1,KOG0800@2759
Ec32 ortholog descriptionZinc finger, RING-type
Ec32 orthologEc-27_005580.1
Cds size540
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462712.336502-UTR-Ecto-sp13_S_contig1333:7670..76951681462712.336502-UTR-Ecto-sp13_S_contig1333:7670..7695Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1333 7671..7695 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462712.3461862-CDS-Ecto-sp13_S_contig1333:7695..82351681462712.3461862-CDS-Ecto-sp13_S_contig1333:7695..8235Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1333 7696..8235 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1333.2667.1prot_Ecto-sp13_S_contig1333.2667.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1333 7696..8235 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1333.2667.1

>prot_Ecto-sp13_S_contig1333.2667.1 ID=prot_Ecto-sp13_S_contig1333.2667.1|Name=mRNA_Ecto-sp13_S_contig1333.2667.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=180bp
MAVSLGLAPVTRSDVAAAAEDRKRRAASSLRVAMSGYGAGGAEGVQGYGK
AGAGGVSAASSAAGRQDAAIFQFGSGKPSPVERQRRRQQQPATSSAEASR
RYRPPTSAAWLNGAASGDWLTEKSGEGASSHIAAQEAAGALGRPSTTARG
TAAAAAASGRRVASGHRSPSGSLVSARLAS
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mRNA from alignment at Ecto-sp13_S_contig1333:7671..8235+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1333.2667.1 ID=mRNA_Ecto-sp13_S_contig1333.2667.1|Name=mRNA_Ecto-sp13_S_contig1333.2667.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=565bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1333:7671..8235+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCCGCCGAAGGCCACCGCGACGGAGATGGCGGTGTCGCTGGGGCTAGCGC
CGGTGACTCGGAGCGACGTTGCTGCGGCAGCGGAGGACAGGAAGAGGAGG
GCTGCGTCGTCGTTGAGAGTGGCGATGTCAGGTTATGGAGCCGGGGGGGC
AGAGGGTGTCCAAGGCTACGGCAAAGCGGGCGCAGGAGGGGTGAGCGCGG
CATCTTCTGCCGCAGGGCGGCAGGACGCGGCGATCTTTCAGTTCGGAAGC
GGGAAGCCTTCGCCGGTGGAGCGGCAACGGCGACGGCAGCAGCAACCCGC
GACTTCGAGCGCGGAGGCTTCGAGGCGCTACAGGCCGCCGACATCAGCAG
CGTGGCTTAATGGTGCAGCCAGCGGCGACTGGCTGACGGAGAAATCCGGG
GAAGGCGCAAGTAGCCATATAGCTGCGCAGGAAGCAGCAGGCGCGTTGGG
AAGGCCCTCGACCACGGCACGTGGGACGGCGGCGGCGGCAGCGGCTTCCG
GCAGGCGGGTTGCAAGCGGCCATCGGTCCCCGTCCGGCAGCTTGGTCTCC
GCCCGCCTCGCGAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1333:7671..8235+

>mRNA_Ecto-sp13_S_contig1333.2667.1 ID=mRNA_Ecto-sp13_S_contig1333.2667.1|Name=mRNA_Ecto-sp13_S_contig1333.2667.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=540bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1333:7671..8235+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGTGTCGCTGGGGCTAGCGCCGGTGACTCGGAGCGACGTTGCTGC
GGCAGCGGAGGACAGGAAGAGGAGGGCTGCGTCGTCGTTGAGAGTGGCGA
TGTCAGGTTATGGAGCCGGGGGGGCAGAGGGTGTCCAAGGCTACGGCAAA
GCGGGCGCAGGAGGGGTGAGCGCGGCATCTTCTGCCGCAGGGCGGCAGGA
CGCGGCGATCTTTCAGTTCGGAAGCGGGAAGCCTTCGCCGGTGGAGCGGC
AACGGCGACGGCAGCAGCAACCCGCGACTTCGAGCGCGGAGGCTTCGAGG
CGCTACAGGCCGCCGACATCAGCAGCGTGGCTTAATGGTGCAGCCAGCGG
CGACTGGCTGACGGAGAAATCCGGGGAAGGCGCAAGTAGCCATATAGCTG
CGCAGGAAGCAGCAGGCGCGTTGGGAAGGCCCTCGACCACGGCACGTGGG
ACGGCGGCGGCGGCAGCGGCTTCCGGCAGGCGGGTTGCAAGCGGCCATCG
GTCCCCGTCCGGCAGCTTGGTCTCCGCCCGCCTCGCGAGC
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