mRNA_Ecto-sp13_S_contig13329.2666.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13329.2666.1
Unique NamemRNA_Ecto-sp13_S_contig13329.2666.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig13329.2666.1 vs. uniprot
Match: D8LQD8_ECTSI (SAM_MT_RSMB_NOP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQD8_ECTSI)

HSP 1 Score: 157 bits (398), Expect = 1.810e-43
Identity = 80/86 (93.02%), Postives = 81/86 (94.19%), Query Frame = 1
Query:   10 QVDGVVPSLLVLPPGTDLHDHAMVKDGSLVLQDKSSCFSAEALLGQEACAAADATRGAGTEWRGGDVIDACAAPGNKTMHAASLLH 267
            +VDGVVPSLLVLPPGTDLHDHAMVKDG LVLQDKSSCFSAEALLGQEACAAA ATR A  EWRGGDVIDACAAPGNKTMHAASLLH
Sbjct:  184 KVDGVVPSLLVLPPGTDLHDHAMVKDGRLVLQDKSSCFSAEALLGQEACAAAGATRDARAEWRGGDVIDACAAPGNKTMHAASLLH 269          
BLAST of mRNA_Ecto-sp13_S_contig13329.2666.1 vs. uniprot
Match: A0A4D9CTY0_9STRA (SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CTY0_9STRA)

HSP 1 Score: 100 bits (250), Expect = 6.730e-23
Identity = 53/83 (63.86%), Postives = 62/83 (74.70%), Query Frame = 1
Query:   16 DGVVPSLLVLPPGTDLHDHAMVKDGSLVLQDKSSCFSAEALLGQEACAAADATRGAGTEWRGGDVIDACAAPGNKTMHAASLL 264
            D  +P+LL+ PPGTDLHDH +VK+G L+LQDK+SCF AE LLG+E        RG G  W G DVIDACAAPGNKT HAA+LL
Sbjct:  178 DTHIPNLLLFPPGTDLHDHPLVKEGILILQDKASCFPAEVLLGRE--------RGRGQGWWG-DVIDACAAPGNKTSHAAALL 251          
BLAST of mRNA_Ecto-sp13_S_contig13329.2666.1 vs. uniprot
Match: A0A836CJW7_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJW7_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 9.960e-22
Identity = 53/82 (64.63%), Postives = 60/82 (73.17%), Query Frame = 1
Query:   16 DGVVPSLLVLPPGTDLHDHAMVKDGSLVLQDKSSCFSAEALLGQEACAAADATRGAGTEWR-GGDVIDACAAPGNKTMHAAS 258
            DG V +LLVLP GTDLH HA+V DG L+LQDKSSCFSA+ALLG             G+ W  GGDVIDACAAPGNKT+HAA+
Sbjct:  171 DGTVGALLVLPHGTDLHAHALVADGRLILQDKSSCFSAQALLG------------GGSSWLDGGDVIDACAAPGNKTLHAAA 240          
BLAST of mRNA_Ecto-sp13_S_contig13329.2666.1 vs. uniprot
Match: A0A1Y1IKM2_KLENI (SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IKM2_KLENI)

HSP 1 Score: 87.0 bits (214), Expect = 4.900e-18
Identity = 47/88 (53.41%), Postives = 58/88 (65.91%), Query Frame = 1
Query:    1 PHVQVDGVVPSLLVLPPGTDLHDHAMVKDGSLVLQDKSSCFSAEALLGQEACAAADATRGAGTEWRGGDVIDACAAPGNKTMHAASLL 264
            P V+ D ++P+LLV PPGTDLHDHAMVKDG L+LQ K+SC  A+AL    +             W    VIDACAAPGNKT+H A+L+
Sbjct:  177 PSVEQDPLIPNLLVFPPGTDLHDHAMVKDGRLILQGKASCMPAQALHPDPS-------------WT---VIDACAAPGNKTIHLAALM 248          
BLAST of mRNA_Ecto-sp13_S_contig13329.2666.1 vs. uniprot
Match: A0A7S1GEN4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GEN4_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 8.670e-18
Identity = 45/83 (54.22%), Postives = 54/83 (65.06%), Query Frame = 1
Query:   16 DGVVPSLLVLPPGTDLHDHAMVKDGSLVLQDKSSCFSAEALLGQEACAAADATRGAGTEWRGGDVIDACAAPGNKTMHAASLL 264
            D  +PSLL LP  TDLHDH +V+DG++VLQDK+SC  A ALLG +A                  VIDACAAPGNKT HAA+L+
Sbjct:   21 DAHIPSLLCLPAATDLHDHRLVRDGAVVLQDKASCMPALALLGADA--------------EPMHVIDACAAPGNKTSHAAALI 89          
BLAST of mRNA_Ecto-sp13_S_contig13329.2666.1 vs. uniprot
Match: A0A8K1FE13_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FE13_PYTOL)

HSP 1 Score: 85.5 bits (210), Expect = 1.620e-17
Identity = 45/77 (58.44%), Postives = 53/77 (68.83%), Query Frame = 1
Query:   34 LLVLPPGTDLHDHAMVKDGSLVLQDKSSCFSAEALLGQEACAAADATRGAGTEWRGGDVIDACAAPGNKTMHAASLL 264
            LLVLPPGT+LH+H +VK G L+LQDK+SCFSA  L G+ +              R GDVIDACAAPGNKT HAA L+
Sbjct:  171 LLVLPPGTELHEHELVKSGKLILQDKASCFSAFVLHGERS----------DKPGRAGDVIDACAAPGNKTSHAAMLI 237          
BLAST of mRNA_Ecto-sp13_S_contig13329.2666.1 vs. uniprot
Match: A0A0P1A4L8_PLAHL (Proliferation-associated nucleolar protein (NOL1) n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A4L8_PLAHL)

HSP 1 Score: 85.5 bits (210), Expect = 1.640e-17
Identity = 49/86 (56.98%), Postives = 56/86 (65.12%), Query Frame = 1
Query:    7 VQVDGVVPSLLVLPPGTDLHDHAMVKDGSLVLQDKSSCFSAEALLGQEACAAADATRGAGTEWRGGDVIDACAAPGNKTMHAASLL 264
            V+ D  V  LLVLP GT+LH+HAMVK G LVLQDK+SCF A  L G+             +E + GDVIDACAAPGNKT H A LL
Sbjct:  165 VKPDRNVRDLLVLPSGTELHEHAMVKSGKLVLQDKASCFPAFVLHGEHV----------DSEGKQGDVIDACAAPGNKTSHLAMLL 240          
BLAST of mRNA_Ecto-sp13_S_contig13329.2666.1 vs. uniprot
Match: A0A024FW73_9STRA (SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024FW73_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 2.190e-17
Identity = 46/85 (54.12%), Postives = 53/85 (62.35%), Query Frame = 1
Query:   10 QVDGVVPSLLVLPPGTDLHDHAMVKDGSLVLQDKSSCFSAEALLGQEACAAADATRGAGTEWRGGDVIDACAAPGNKTMHAASLL 264
            Q D  +P LLVLP   +LHDH +V++G LVLQDK+SCF A  LL   A             W GGD+IDACAAPGNKT H A LL
Sbjct:  179 QNDVHIPDLLVLPRNIELHDHELVREGKLVLQDKASCFPAFVLLSDPA-------------WPGGDIIDACAAPGNKTTHLAMLL 250          
BLAST of mRNA_Ecto-sp13_S_contig13329.2666.1 vs. uniprot
Match: A0A5D6Y5J7_9STRA (SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y5J7_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 3.090e-17
Identity = 50/86 (58.14%), Postives = 57/86 (66.28%), Query Frame = 1
Query:   10 QVDGVVPSLLVLPPGTDLHDHAMVKDGSLVLQDKSSCFSAEALLGQEACAAADATRGAGTEWRGGDVIDACAAPGNKTMHAASLLH 267
            Q DG VP LLVLP GT+LH++A+   G LVLQDK+SCF A  L G+ + A        G E   GDVIDACAAPGNKT H A LLH
Sbjct:  163 QRDGDVPDLLVLPHGTELHENALAAAGKLVLQDKASCFPAYILHGEHSDAP-------GME---GDVIDACAAPGNKTCHVAMLLH 238          
BLAST of mRNA_Ecto-sp13_S_contig13329.2666.1 vs. uniprot
Match: A0A3R7HLE0_9STRA (SAM_MT_RSMB_NOP domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7HLE0_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 4.180e-17
Identity = 49/83 (59.04%), Postives = 54/83 (65.06%), Query Frame = 1
Query:   16 DGVVPSLLVLPPGTDLHDHAMVKDGSLVLQDKSSCFSAEALLGQEACAAADATRGAGTEWRGGDVIDACAAPGNKTMHAASLL 264
            D  V  LLVLP GT+LH+H MVK G LVLQDK+SCF A  L G+ A AA           + GDVIDACAAPGNKT H A LL
Sbjct:  168 DRDVRDLLVLPSGTELHEHEMVKSGKLVLQDKASCFPAFVLQGEHADAAG----------KRGDVIDACAAPGNKTSHLAMLL 240          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13329.2666.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQD8_ECTSI1.810e-4393.02SAM_MT_RSMB_NOP domain-containing protein n=2 Tax=... [more]
A0A4D9CTY0_9STRA6.730e-2363.86SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=... [more]
A0A836CJW7_9STRA9.960e-2264.63S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A1Y1IKM2_KLENI4.900e-1853.41SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=... [more]
A0A7S1GEN4_9STRA8.670e-1854.22Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A8K1FE13_PYTOL1.620e-1758.44Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A0P1A4L8_PLAHL1.640e-1756.98Proliferation-associated nucleolar protein (NOL1) ... [more]
A0A024FW73_9STRA2.190e-1754.12SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=... [more]
A0A5D6Y5J7_9STRA3.090e-1758.14SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=... [more]
A0A3R7HLE0_9STRA4.180e-1759.04SAM_MT_RSMB_NOP domain-containing protein n=3 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13329contigEcto-sp13_S_contig13329:3681..4569 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score159.1
Seed ortholog evalue9.7e-37
Seed eggNOG ortholog2880.D8LQD8
Model size267
KEGG koko:K15264
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.rRNA base methylation
EggNOG OGsCOG0144@1,KOG2360@2759
EC2.1.1.311
Cds size267
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462712.2991595-CDS-Ecto-sp13_S_contig13329:3680..37861681462712.2991595-CDS-Ecto-sp13_S_contig13329:3680..3786Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13329 3681..3786 +
1681462712.3090155-CDS-Ecto-sp13_S_contig13329:4408..45691681462712.3090155-CDS-Ecto-sp13_S_contig13329:4408..4569Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13329 4409..4569 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13329.2666.1prot_Ecto-sp13_S_contig13329.2666.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13329 3681..4569 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13329.2666.1

>prot_Ecto-sp13_S_contig13329.2666.1 ID=prot_Ecto-sp13_S_contig13329.2666.1|Name=mRNA_Ecto-sp13_S_contig13329.2666.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=89bp
PHVQVDGVVPSLLVLPPGTDLHDHAMVKDGSLVLQDKSSCFSAEALLGQE
ACAAADATRGAGTEWRGGDVIDACAAPGNKTMHAASLLH
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mRNA from alignment at Ecto-sp13_S_contig13329:3681..4569+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13329.2666.1 ID=mRNA_Ecto-sp13_S_contig13329.2666.1|Name=mRNA_Ecto-sp13_S_contig13329.2666.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=889bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13329:3681..4569+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCCATGTTCAGGTTGACGGCGTCGTGCCCAGCCTGCTGGTGCTGCCGCC AGGAACAGACCTGCATGACCACGCCATGGTCAAGGACGGCAGCCTAGTCC TCCAAGGTGTGTGACCCCGTTACGTTAGTGGTGTCATCTAAATGCATCGA TTTCCGTCGTCTGGTCATGTGGCTGTACAAGCACCAAGTGGTTCTGTTCC AACCAGCGTATCGTAGGGGAGGGGGGGGGGGGGCTCGTGCTGAAGGTGAG GCATGACCAACCCCTGGGCGGCCGGGTTTGGCGCCGTGATTGCTATGCGG GGGGTGAGGGCGGTGCCGAGGTTACACATAGGTTGGGAAAGAGATGCAGG CGCGAGAGTGCCGTGATAGATAGGCGTGACGTTGTTGTCTGACCCACTCC TTTGTTGCGGGAGCAATCTGTTCAGCGAGAGCAATCCTCTCAAGGGGATG CTGTAGCCGCCCCCGCCAAAGTTGTACCATTTACGAACCAGGGAAGCTGG CGGGGCAAGCGGCGGGGAATTGAAGCATTCAGTGGAACCTGAAGGGCTAG TTCCCGGTGTTGGGAACCTACACACGGCAGGCATTGATTGCCACGGGAGT TAGCCGGTGTCGACAATACCTCCGCAACACGCTCGCCCCGTCACCACAAT ACGTTACCCCAACTCGCGTGGGCGGGGACCCCATGCTCTTTCGACTCCGA CCAACTTGCTCATCTTGTTCGGGTGCAGACAAGAGCTCCTGCTTCTCGGC CGAGGCTCTCCTGGGGCAAGAGGCGTGCGCAGCCGCCGACGCTACCCGGG GTGCGGGGACGGAATGGAGAGGCGGGGACGTGATCGACGCTTGCGCCGCC CCGGGGAACAAGACAATGCACGCGGCGTCCCTGCTCCAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13329:3681..4569+

>mRNA_Ecto-sp13_S_contig13329.2666.1 ID=mRNA_Ecto-sp13_S_contig13329.2666.1|Name=mRNA_Ecto-sp13_S_contig13329.2666.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13329:3681..4569+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCCATGTTCAGGTTGACGGCGTCGTGCCCAGCCTGCTGGTGCTGCCGCC
AGGAACAGACCTGCATGACCACGCCATGGTCAAGGACGGCAGCCTAGTCC
TCCAAGACAAGAGCTCCTGCTTCTCGGCCGAGGCTCTCCTGGGGCAAGAG
GCGTGCGCAGCCGCCGACGCTACCCGGGGTGCGGGGACGGAATGGAGAGG
CGGGGACGTGATCGACGCTTGCGCCGCCCCGGGGAACAAGACAATGCACG
CGGCGTCCCTGCTCCAC
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