mRNA_Ecto-sp13_S_contig13329.2666.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig13329.2666.1 vs. uniprot
Match: D8LQD8_ECTSI (SAM_MT_RSMB_NOP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQD8_ECTSI) HSP 1 Score: 157 bits (398), Expect = 1.810e-43 Identity = 80/86 (93.02%), Postives = 81/86 (94.19%), Query Frame = 1
Query: 10 QVDGVVPSLLVLPPGTDLHDHAMVKDGSLVLQDKSSCFSAEALLGQEACAAADATRGAGTEWRGGDVIDACAAPGNKTMHAASLLH 267
+VDGVVPSLLVLPPGTDLHDHAMVKDG LVLQDKSSCFSAEALLGQEACAAA ATR A EWRGGDVIDACAAPGNKTMHAASLLH
Sbjct: 184 KVDGVVPSLLVLPPGTDLHDHAMVKDGRLVLQDKSSCFSAEALLGQEACAAAGATRDARAEWRGGDVIDACAAPGNKTMHAASLLH 269
BLAST of mRNA_Ecto-sp13_S_contig13329.2666.1 vs. uniprot
Match: A0A4D9CTY0_9STRA (SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CTY0_9STRA) HSP 1 Score: 100 bits (250), Expect = 6.730e-23 Identity = 53/83 (63.86%), Postives = 62/83 (74.70%), Query Frame = 1
Query: 16 DGVVPSLLVLPPGTDLHDHAMVKDGSLVLQDKSSCFSAEALLGQEACAAADATRGAGTEWRGGDVIDACAAPGNKTMHAASLL 264
D +P+LL+ PPGTDLHDH +VK+G L+LQDK+SCF AE LLG+E RG G W G DVIDACAAPGNKT HAA+LL
Sbjct: 178 DTHIPNLLLFPPGTDLHDHPLVKEGILILQDKASCFPAEVLLGRE--------RGRGQGWWG-DVIDACAAPGNKTSHAAALL 251
BLAST of mRNA_Ecto-sp13_S_contig13329.2666.1 vs. uniprot
Match: A0A836CJW7_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJW7_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 9.960e-22 Identity = 53/82 (64.63%), Postives = 60/82 (73.17%), Query Frame = 1
Query: 16 DGVVPSLLVLPPGTDLHDHAMVKDGSLVLQDKSSCFSAEALLGQEACAAADATRGAGTEWR-GGDVIDACAAPGNKTMHAAS 258
DG V +LLVLP GTDLH HA+V DG L+LQDKSSCFSA+ALLG G+ W GGDVIDACAAPGNKT+HAA+
Sbjct: 171 DGTVGALLVLPHGTDLHAHALVADGRLILQDKSSCFSAQALLG------------GGSSWLDGGDVIDACAAPGNKTLHAAA 240
BLAST of mRNA_Ecto-sp13_S_contig13329.2666.1 vs. uniprot
Match: A0A1Y1IKM2_KLENI (SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IKM2_KLENI) HSP 1 Score: 87.0 bits (214), Expect = 4.900e-18 Identity = 47/88 (53.41%), Postives = 58/88 (65.91%), Query Frame = 1
Query: 1 PHVQVDGVVPSLLVLPPGTDLHDHAMVKDGSLVLQDKSSCFSAEALLGQEACAAADATRGAGTEWRGGDVIDACAAPGNKTMHAASLL 264
P V+ D ++P+LLV PPGTDLHDHAMVKDG L+LQ K+SC A+AL + W VIDACAAPGNKT+H A+L+
Sbjct: 177 PSVEQDPLIPNLLVFPPGTDLHDHAMVKDGRLILQGKASCMPAQALHPDPS-------------WT---VIDACAAPGNKTIHLAALM 248
BLAST of mRNA_Ecto-sp13_S_contig13329.2666.1 vs. uniprot
Match: A0A7S1GEN4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GEN4_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 8.670e-18 Identity = 45/83 (54.22%), Postives = 54/83 (65.06%), Query Frame = 1
Query: 16 DGVVPSLLVLPPGTDLHDHAMVKDGSLVLQDKSSCFSAEALLGQEACAAADATRGAGTEWRGGDVIDACAAPGNKTMHAASLL 264
D +PSLL LP TDLHDH +V+DG++VLQDK+SC A ALLG +A VIDACAAPGNKT HAA+L+
Sbjct: 21 DAHIPSLLCLPAATDLHDHRLVRDGAVVLQDKASCMPALALLGADA--------------EPMHVIDACAAPGNKTSHAAALI 89
BLAST of mRNA_Ecto-sp13_S_contig13329.2666.1 vs. uniprot
Match: A0A8K1FE13_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FE13_PYTOL) HSP 1 Score: 85.5 bits (210), Expect = 1.620e-17 Identity = 45/77 (58.44%), Postives = 53/77 (68.83%), Query Frame = 1
Query: 34 LLVLPPGTDLHDHAMVKDGSLVLQDKSSCFSAEALLGQEACAAADATRGAGTEWRGGDVIDACAAPGNKTMHAASLL 264
LLVLPPGT+LH+H +VK G L+LQDK+SCFSA L G+ + R GDVIDACAAPGNKT HAA L+
Sbjct: 171 LLVLPPGTELHEHELVKSGKLILQDKASCFSAFVLHGERS----------DKPGRAGDVIDACAAPGNKTSHAAMLI 237
BLAST of mRNA_Ecto-sp13_S_contig13329.2666.1 vs. uniprot
Match: A0A0P1A4L8_PLAHL (Proliferation-associated nucleolar protein (NOL1) n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A4L8_PLAHL) HSP 1 Score: 85.5 bits (210), Expect = 1.640e-17 Identity = 49/86 (56.98%), Postives = 56/86 (65.12%), Query Frame = 1
Query: 7 VQVDGVVPSLLVLPPGTDLHDHAMVKDGSLVLQDKSSCFSAEALLGQEACAAADATRGAGTEWRGGDVIDACAAPGNKTMHAASLL 264
V+ D V LLVLP GT+LH+HAMVK G LVLQDK+SCF A L G+ +E + GDVIDACAAPGNKT H A LL
Sbjct: 165 VKPDRNVRDLLVLPSGTELHEHAMVKSGKLVLQDKASCFPAFVLHGEHV----------DSEGKQGDVIDACAAPGNKTSHLAMLL 240
BLAST of mRNA_Ecto-sp13_S_contig13329.2666.1 vs. uniprot
Match: A0A024FW73_9STRA (SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024FW73_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 2.190e-17 Identity = 46/85 (54.12%), Postives = 53/85 (62.35%), Query Frame = 1
Query: 10 QVDGVVPSLLVLPPGTDLHDHAMVKDGSLVLQDKSSCFSAEALLGQEACAAADATRGAGTEWRGGDVIDACAAPGNKTMHAASLL 264
Q D +P LLVLP +LHDH +V++G LVLQDK+SCF A LL A W GGD+IDACAAPGNKT H A LL
Sbjct: 179 QNDVHIPDLLVLPRNIELHDHELVREGKLVLQDKASCFPAFVLLSDPA-------------WPGGDIIDACAAPGNKTTHLAMLL 250
BLAST of mRNA_Ecto-sp13_S_contig13329.2666.1 vs. uniprot
Match: A0A5D6Y5J7_9STRA (SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y5J7_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 3.090e-17 Identity = 50/86 (58.14%), Postives = 57/86 (66.28%), Query Frame = 1
Query: 10 QVDGVVPSLLVLPPGTDLHDHAMVKDGSLVLQDKSSCFSAEALLGQEACAAADATRGAGTEWRGGDVIDACAAPGNKTMHAASLLH 267
Q DG VP LLVLP GT+LH++A+ G LVLQDK+SCF A L G+ + A G E GDVIDACAAPGNKT H A LLH
Sbjct: 163 QRDGDVPDLLVLPHGTELHENALAAAGKLVLQDKASCFPAYILHGEHSDAP-------GME---GDVIDACAAPGNKTCHVAMLLH 238
BLAST of mRNA_Ecto-sp13_S_contig13329.2666.1 vs. uniprot
Match: A0A3R7HLE0_9STRA (SAM_MT_RSMB_NOP domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7HLE0_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 4.180e-17 Identity = 49/83 (59.04%), Postives = 54/83 (65.06%), Query Frame = 1
Query: 16 DGVVPSLLVLPPGTDLHDHAMVKDGSLVLQDKSSCFSAEALLGQEACAAADATRGAGTEWRGGDVIDACAAPGNKTMHAASLL 264
D V LLVLP GT+LH+H MVK G LVLQDK+SCF A L G+ A AA + GDVIDACAAPGNKT H A LL
Sbjct: 168 DRDVRDLLVLPSGTELHEHEMVKSGKLVLQDKASCFPAFVLQGEHADAAG----------KRGDVIDACAAPGNKTSHLAMLL 240 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13329.2666.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig13329.2666.1 >prot_Ecto-sp13_S_contig13329.2666.1 ID=prot_Ecto-sp13_S_contig13329.2666.1|Name=mRNA_Ecto-sp13_S_contig13329.2666.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=89bp PHVQVDGVVPSLLVLPPGTDLHDHAMVKDGSLVLQDKSSCFSAEALLGQEback to top mRNA from alignment at Ecto-sp13_S_contig13329:3681..4569+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig13329.2666.1 ID=mRNA_Ecto-sp13_S_contig13329.2666.1|Name=mRNA_Ecto-sp13_S_contig13329.2666.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=889bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13329:3681..4569+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13329:3681..4569+ >mRNA_Ecto-sp13_S_contig13329.2666.1 ID=mRNA_Ecto-sp13_S_contig13329.2666.1|Name=mRNA_Ecto-sp13_S_contig13329.2666.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13329:3681..4569+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |