mRNA_Ecto-sp13_S_contig13327.2664.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13327.2664.1
Unique NamemRNA_Ecto-sp13_S_contig13327.2664.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13327.2664.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13327contigEcto-sp13_S_contig13327:425..4758 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size483
Hectar predicted targeting categorysignal anchor
Exons4
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-05_002030.1
Cds size483
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462712.171926-CDS-Ecto-sp13_S_contig13327:424..6131681462712.171926-CDS-Ecto-sp13_S_contig13327:424..613Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13327 425..613 +
1681462712.1841576-CDS-Ecto-sp13_S_contig13327:2511..25741681462712.1841576-CDS-Ecto-sp13_S_contig13327:2511..2574Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13327 2512..2574 +
1681462712.1937017-CDS-Ecto-sp13_S_contig13327:3443..36051681462712.1937017-CDS-Ecto-sp13_S_contig13327:3443..3605Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13327 3444..3605 +
1681462712.2015493-CDS-Ecto-sp13_S_contig13327:4689..47581681462712.2015493-CDS-Ecto-sp13_S_contig13327:4689..4758Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13327 4690..4758 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13327.2664.1prot_Ecto-sp13_S_contig13327.2664.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13327 425..4758 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13327.2664.1

>prot_Ecto-sp13_S_contig13327.2664.1 ID=prot_Ecto-sp13_S_contig13327.2664.1|Name=mRNA_Ecto-sp13_S_contig13327.2664.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=161bp
VLPLDSLETRVKRLADKRHLFVWVGALGTVAMSAVGGTGLAFFKASAVLR
LMYALSAIYAATTAVCVCILGVRIKRVIDLAEAKARLGSKAFYEMARRNL
RWQMAALCGTCAAFSTVEAVHELWNRAEHTPLITSMGLTMIATLAFTLAV
HFSRPNRVSNR
back to top

mRNA from alignment at Ecto-sp13_S_contig13327:425..4758+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13327.2664.1 ID=mRNA_Ecto-sp13_S_contig13327.2664.1|Name=mRNA_Ecto-sp13_S_contig13327.2664.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4334bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13327:425..4758+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGCTGCCTTTGGATAGCCTGGAGACCAGAGTGAAGAGGCTGGCGGATAA
GCGTCATTTGTTCGTTTGGGTGGGGGCATTAGGTACCGTGGCCATGTCGG
CTGTGGGTGGAACCGGCCTTGCCTTCTTCAAAGCATCAGCAGTCTTGAGG
CTGATGTACGCGCTCAGTGCTATCTACGCGGCTACCACGGTGAGGGTTCT
ACTCCACTGTAAATTTCGGTGTAGCCTTTCGAAAAACCGAGACCGGGGAC
ACTCTATTGGTAGAAGACAAGAAACAACACCCGCAAGCTTACCGCATTTC
GACCGTTCTGCTTGCGGCACGGAACCGACACATTCGCTAATATTTTAGTT
TCACGATACGAAAAGCATGATAGCCCACAGCTTGTTGCGGTCGTTTTTAG
GATGGACATCGCTTCGGTTTCTGCTCATTGCCTCCTTCCACCCGTGCCGG
TCCACCTGACACGGTCACCTTCGATGTCAGAAACAGACTGCACAACAAAT
GGTGCGCTTTTGAATCATAAGGAAAAAAACCGAATCAGTGAACTATCAAG
CGCTTTACCAGGTCACACCACACAGACCGGAAAACGAAACGAGGACTAAT
GAGAATAGGAAATAAAACTGGGAAAACCTCAATCCAGACGACTATGTAAT
TACTGTTCTGTGCTGATACGATGACGTCGCATTTTCCACACGACTCGAGA
ATGCCTTTACAATTCATCGCTGATGAACCGTCCCCTGAACATGATGAGTG
ACTCGATGTCAATGTCGAGTGTGACAGAGTGAATACTGACCGCTTGACAA
CTTGCCTGGAACCATCTGCTTGTAGTACGTCATCTGGGTTGTAAAGGGTA
TCCTCAACGTGCTGTATTCCGAGCGTTCACGAGCCACTTAGGCGAAATCG
GGGTTTGTACGCCATGGATGGTGCCCAAGTGCTTTCCTATGGGGAGCACT
TAAGCACCCATGGTACAAAGGTCCATAGGTAGTTTGTGGGGTTGTCGTCC
CTTGAAACGTCGCATGCGTGCGGCCCATGCAATGATTTCCGGCCCATACG
CCCTCGTGTGTGTCGAGCTCTTTGGACGGCCCAAGGGCCCTGAGCCACGG
CCTGTGGGCAGCGTATCACGACTATATTGTTCAAATCCACGACGGTATGT
ACATCGTTGTTCGTCCAGAGGCTGCCGTGTGTCATCCCTCCCGATTTGTC
TTGCACTTGTCATGGGTCGTCATTAGTGTCTCATGGTTTATCGACCGAGC
ACTGCCCACCCAAAGAGCGCAATTTTAGATACTGGAACCCGTCGGACAAC
GATGGGTCGCCCAGTGACCGCCCATGGGCCGTCTTTGCTCCACCCACAAG
TCGTCCGTTGGTCTTCGTTAGAGGTCCTTCAGAGGCAAGCGTCTCGGCTT
TGAAATTGACACTTCATATATCCCCTACGTGGCCGGCCAAGGTGTTGCCG
TTGATATCGGCGGGCCTAGAGGTGGCCTGTGGGCGGCCTATGAATTGGCC
CACGGGTGAACCATGGACCCTAAAGGCTAGGCACGGCCTTTCGTTGACCC
ACATACACGGCCCATCGTTGTCCAATGGGAAGTTCATGGGATCACTAACA
GCAGATCCCACGTGACGGGGCCATGGCGACGTATGTGCCGCCCATCGGCA
GCCGAAACCGACCCATGGGCGGCTGTGGGCTTTCCATTGTCGGACGCATG
CACAAAGTTGACGTTTTCCCTGGAGCGACAGAAAGGTAATCGACGATCTG
ACGTAACCTCTCCGTCAATGGGGAATCAGTTCACACGGAGTAGGGAGAAA
CAATGGAATCCTTCTCTTTGACGACACGAAGCGAGACAGGACGTGTTGTT
TCTATTAATCTTTGCTCGGCGCCTAAGGAGCTTCAAACATTGCCCGTGCT
AGAGTTTCTTACTACTTGCGCCGAATTTTGCCTTTCGTTTTGCTCTCTAC
CTCGCATATGCTTCACAGCCTCGCCCCGACCAGTTTGACCAGGTCTTGCC
CCAACGATGACAGCGGCACGGCTACGACACCAGCATCGGTTGCTTGAAAT
GTTCCACTTTCCCCTCGTGCAATGCGCCCGCTCGCAGGCGGTCTGTGTCT
GCATTCTCGGCGTCCGAATCAAGCGTGTTATCGACCTCGCCGAAGCGAAG
GTAATGCAATGTGGGAGTACAAGAGCACGAAAAACACTCGAACAGGAACT
CAGAAAGTAAGTTATTGGAATTATCGCGGTACACATCTTTGTACCTGCTC
GGCCACCATCGTTACGCATCACGAGTGTTTTCCTGTCGAACACTCGTCCG
CCCCCGATGCAATTTGATTCGTACGAACAGGTGCATGGCTAGAAACGTTA
CGCCTCGACGCCAACCGATTTGGGATTGCAAGCTCGTTTCTAGAAGAATG
CAAACCATGTTGGATAAGTCTTTGAATCGGCTAAGTTCGGTTTGGGGTTC
GGTCAGGGTAGGGTTAGTGTCTGCGCGCCCCCTGCCGAATCGCTTTCCGA
AATACACTTCATTTCATTCTGCGCCTAGGCAGCTTTGCCTGTTGCTGCTC
GAAGACCCAATACAAGGCACGGTGAAGCACGTCATTTTGTGCGCCATTGG
CTCAACTAGTGCTTTGAGCCATCAACATTGCTGGATGTACACTGCACGTG
TCTTGAACGAACACGTGGGGCGTAGCGGCCTGTTCTCCCTATTGCGGGCA
CCTCTTCCCCTGTTTGATATATCCGGCTGTATGTCACCTGCTATTGTTCC
GGTCCACCGAATCCATCCAGCCACTCGTGGCGTGGAATGAGCTGCCCTTG
CGCCTTTCGTGACAACCTCTTGCGTGCTAACACACAAACATGATCTCGGT
GGCTCAAGCATGAAGAAATAACCGTTGAAGTTTCGGCAGCTCGAAACTCG
AGAAGGAAACCAAGCTTCAGGTTTCAGGGTTTTCAGACCAGGGTACCGTG
TGACTGAACGTACCGTGTGACCAGACCTTGATCGCATGCGGGGCATCGTT
CCGTACCGCTTCGTGACAGGCACGGCTCGGCTCCAAAGCTTTCTACGAAA
TGGCTAGGAGAAACCTCCGGTGGCAAATGGCTGCCCTATGCGGGACTTGT
GCCGCCTTTTCGACCGTCGAGGCAGTGCACGAGCTATGGAACCGCGCAGA
ACACACTCCTCTCATCACGAGCATGGGCCTCGTAAGTAACTACCCCGTTG
CTATTGTTCTTGTCGGAGGGCTGTAAGAATGATACCCCCTTTCTTGTACA
CTGCTTTGAATGATTTTCGCTTCGAGCGCACCACCACCGAGCATGTTGTG
CGGGTGATCGAAGCGTGCACGTCGGTGGGAGTCGCACGAGTTCTCCGAAG
CACGTTGCGCCGCCCATTGCAACCCGTTTGTGGTGCCAAGCACTCCACGG
TGTGCCGTGAAGCACTGCCTACTACACCACGGCCGTGATGTAGTCGAGCA
TCACCCGATCACTCGGTGGTGACGAAAAGCCGCAAGGAAGTAAATATTTC
CATGAGCGAATCGTTTACGGTAGGTGTATGCTGTCGAGGGCACCACTGTG
TGACCAACGAAGCAATGTGACAGCTGCATCAATATTTGCCAAATTCCAAC
GCCATAACAAACGAACAAGCAAACATCGTATACACTCCTTGAGTGCACGG
GTAATACACCTGCAATAGTTTCCATTGTGGGCAGCCTGTCTCAGTATTTT
GTAGTCGAAGGGTATCTAGGAGTTGTTTGAGTGATCGATCATTTCGGTTA
TACGAAATTTGAAGACTTGGACGAATATGAAAAGGTCGGACGAGCACATC
ATGCCTCGTCTTGCCCCGCCTTCTAGTCTGCACATATCGTCGTTCCCCCA
TATGGGACGAGATTGGAAATTTTCATTGGCCAAATACGTTTGTTTGTGCA
TTATGTTGTGCCTTTGCCCACGAACGTGGCGAGGTCGATCGCAGCGATGA
ATAGAAGATCAACATTGCTCGACACCTGTGCTCTCTCGATCAGAAGTGGT
CAATGTCAACAAAGATGAGCATGGAAGAACCGTTGACACCGTTCGAGCTT
TGGAAGGACACACTCAAGGAGCGATAGAAGGTACAACGTTCTGCGTTGAG
GGAGATTTCCATCATGGAAGTGCCCCGAAGAAAGAAGTCTTTGCAAAGTA
CTAACGGTGTGAACGATAATGTCTCCGACTTCCAACGCACGTATAATCAC
GCCTCCCTCGCCTGCCCGCTTCATCGCACGCTGGCCACGCACGTTTCCGC
GCTGAACAATCGCAGACGATGATAGCGACGCTAGCCTTCACCTTGGCCGT
GCACTTCTCCAGGCCCAACAGAGTTTCGAACCGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13327:425..4758+

>mRNA_Ecto-sp13_S_contig13327.2664.1 ID=mRNA_Ecto-sp13_S_contig13327.2664.1|Name=mRNA_Ecto-sp13_S_contig13327.2664.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=483bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13327:425..4758+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGCTGCCTTTGGATAGCCTGGAGACCAGAGTGAAGAGGCTGGCGGATAA
GCGTCATTTGTTCGTTTGGGTGGGGGCATTAGGTACCGTGGCCATGTCGG
CTGTGGGTGGAACCGGCCTTGCCTTCTTCAAAGCATCAGCAGTCTTGAGG
CTGATGTACGCGCTCAGTGCTATCTACGCGGCTACCACGGCGGTCTGTGT
CTGCATTCTCGGCGTCCGAATCAAGCGTGTTATCGACCTCGCCGAAGCGA
AGGCACGGCTCGGCTCCAAAGCTTTCTACGAAATGGCTAGGAGAAACCTC
CGGTGGCAAATGGCTGCCCTATGCGGGACTTGTGCCGCCTTTTCGACCGT
CGAGGCAGTGCACGAGCTATGGAACCGCGCAGAACACACTCCTCTCATCA
CGAGCATGGGCCTCACGATGATAGCGACGCTAGCCTTCACCTTGGCCGTG
CACTTCTCCAGGCCCAACAGAGTTTCGAACCGA
back to top