mRNA_Ecto-sp13_S_contig13324.2661.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13324.2661.1
Unique NamemRNA_Ecto-sp13_S_contig13324.2661.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig13324.2661.1 vs. uniprot
Match: A0A6H5K8N7_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8N7_9PHAE)

HSP 1 Score: 245 bits (625), Expect = 1.180e-77
Identity = 122/123 (99.19%), Postives = 122/123 (99.19%), Query Frame = 1
Query:   31 RLRHPNIVLIMGVAFAPPGHRITLDGDGTASMSVSRRRELGFEDLGTSTQGSLCIVTELLSRGSLEDVIRRGGLRTASYGLILDLALQAARGMLYLHTHNPAIVHRDLKSSNLVIDEHWHVKV 399
            RLRHPNIVLIMGVAFAPPGHRITLDGDGTASMSVSRRRELGFED GTSTQGSLCIVTELLSRGSLEDVIRRGGLRTASYGLILDLALQAARGMLYLHTHNPAIVHRDLKSSNLVIDEHWHVKV
Sbjct:   63 RLRHPNIVLIMGVAFAPPGHRITLDGDGTASMSVSRRRELGFEDFGTSTQGSLCIVTELLSRGSLEDVIRRGGLRTASYGLILDLALQAARGMLYLHTHNPAIVHRDLKSSNLVIDEHWHVKV 185          
BLAST of mRNA_Ecto-sp13_S_contig13324.2661.1 vs. uniprot
Match: D7FTH4_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTH4_ECTSI)

HSP 1 Score: 233 bits (594), Expect = 2.300e-68
Identity = 122/140 (87.14%), Postives = 122/140 (87.14%), Query Frame = 1
Query:   31 RLRHPNIVLIMGVAFAPPGHRITLDGDGTASMSVSRRRELGFEDLGTSTQGSLCIVTELLSRGSLEDVIRRGGLRTASYGLILDLALQ-----------------AARGMLYLHTHNPAIVHRDLKSSNLVIDEHWHVKV 399
            RLRHPNIVLIMGVAFAPPGHRITLDGDGTASMSVSRRRELGFE LGTSTQGSLCIVTELLSRGSLEDVIRRGGLRTASYGLILDLALQ                 AARGMLYLHTHNPAIVHRDLKSSNLVIDEHWHVKV
Sbjct: 1810 RLRHPNIVLIMGVAFAPPGHRITLDGDGTASMSVSRRRELGFEGLGTSTQGSLCIVTELLSRGSLEDVIRRGGLRTASYGLILDLALQRLRMGCGDMYCTPYCSKAARGMLYLHTHNPAIVHRDLKSSNLVIDEHWHVKV 1949          
BLAST of mRNA_Ecto-sp13_S_contig13324.2661.1 vs. uniprot
Match: A0A812V665_SYMMI (SIS8 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812V665_SYMMI)

HSP 1 Score: 106 bits (265), Expect = 4.320e-24
Identity = 65/143 (45.45%), Postives = 84/143 (58.74%), Query Frame = 1
Query:   31 RLRHPNIVLIMGVAFA-------PPGHR---------ITLDGDGTASMSVSRRRELGFEDLGTSTQGSLCIVTELLSRGSLEDVIRRGGLRTA----SYGLILDLALQAARGMLYLHTHNPAIVHRDLKSSNLVIDEHWHVKV 399
            RLRHPNIVL+MGV+         PPG           +T D   T S S + +++            S+CI+TE L +GSL D++  G  + +    +Y L+L  ALQAARGMLYLH+H P I HRDLKSSNLV+D+HW VKV
Sbjct:  426 RLRHPNIVLVMGVSIVSLVLPGPPPGFDXXXXXNSGVLTSDDKRTRSKSSAEKKD-------EKVVRSICIITEYLEQGSLADILY-GSNKVSDDIWTYELVLTCALQAARGMLYLHSHQPPICHRDLKSSNLVVDDHWVVKV 560          
BLAST of mRNA_Ecto-sp13_S_contig13324.2661.1 vs. uniprot
Match: A0A7S0C4K0_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C4K0_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 4.210e-20
Identity = 60/138 (43.48%), Postives = 81/138 (58.70%), Query Frame = 1
Query:   31 RLRHPNIVLIMGVAFAPPGHRITLDGDGTASMSVSRRRELGFEDLGTSTQGSLCIVTELLSRGSLEDVI-----RRGGLR----------TASYGLILDLALQAARGMLYLHTHNPAIVHRDLKSSNLVIDEHWHVKV 399
            RLRHPNI L+MG++ +   H   L      +  +   R L  E L   T  SL I+TE +  GSL DVI     +R G+           + +Y LIL  ALQAA+GM+YLH+++P I HRDLK+SNL++DE+W VKV
Sbjct:   83 RLRHPNIALLMGISISDSSHSSLLC---ERTKKIHEERHLD-ESLLLPTVESLFIITEYMKMGSLADVISNVRKQRDGVYDFTTRFNKKISWNYELILSCALQAAQGMMYLHSNHPPICHRDLKASNLLVDENWVVKV 216          
BLAST of mRNA_Ecto-sp13_S_contig13324.2661.1 vs. uniprot
Match: A0A482SNM6_9ARCH (Protein kinase domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SNM6_9ARCH)

HSP 1 Score: 88.6 bits (218), Expect = 8.790e-18
Identity = 45/75 (60.00%), Postives = 55/75 (73.33%), Query Frame = 1
Query:  184 SLCIVTELLSRGSLEDVI---RRGGLRTASYGLILDLALQAARGMLYLHTHNPAIVHRDLKSSNLVIDEHWHVKV 399
            ++CI+TE L +GSL D++    R      +Y LIL  ALQAARGMLYLH+H P I HRDLKSSNLV+D+HW VKV
Sbjct:   40 TVCIITEYLEQGSLADILYGPTRLPAEIWTYELILTCALQAARGMLYLHSHQPPICHRDLKSSNLVVDDHWVVKV 114          
BLAST of mRNA_Ecto-sp13_S_contig13324.2661.1 vs. uniprot
Match: A0A5J4XKT0_9CHLO (PAS domain-containing tyrosine kinase n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XKT0_9CHLO)

HSP 1 Score: 88.6 bits (218), Expect = 9.230e-18
Identity = 50/128 (39.06%), Postives = 68/128 (53.12%), Query Frame = 1
Query:   34 LRHPNIVLIMGVAFAPPGHRITLDGDGTASMSVSRRRELGFEDLGTSTQGSLCIVTELLSRGSLEDVIRRGGLRTASYGLILD------LALQAARGMLYLHTHNPAIVHRDLKSSNLVIDEHWHVKV 399
            +RHPN+V+ MG+   P                                   +C+VTE  +RGSL DVIR+    +A +  +LD      +AL AA+GML LH HNP+I+HRDLKS NL++D+HW VKV
Sbjct:  532 IRHPNVVMFMGLCLNP-----------------------------------VCVVTEFCARGSLSDVIRKAA-SSAIFAQLLDWPKRLSMALDAAKGMLQLHNHNPSILHRDLKSPNLLVDKHWRVKV 623          
BLAST of mRNA_Ecto-sp13_S_contig13324.2661.1 vs. uniprot
Match: A0A7S2RKW5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RKW5_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 2.930e-17
Identity = 61/145 (42.07%), Postives = 80/145 (55.17%), Query Frame = 1
Query:   31 RLRHPNIVLIMGVA-FAPPGHRITLDGDGTASMSVSRRRELGFEDLGTSTQGSLCIVTELLSRGSLEDVI-------------RRGGLRTAS--------YGLILDLALQAARGMLYLHTHNPAIVHRDLKSSNLVIDEHWHVKV 399
            RLRHPN+VLIMGV  F    HRI  +        + R  +L  + +G        I+ E L+RGSL DV+               G +R++S        Y L+L  ALQAARG+L+LH+  P IVHRD+KSSNLVID+ W VK+
Sbjct:  109 RLRHPNLVLIMGVTRFYAGQHRIPENAG-----QLMRGFKLSDQTIG--------IICEYLNRGSLADVLYDDEGGASAGPPGSGGRVRSSSTDSVTEWTYELVLSCALQAARGLLFLHSQYPPIVHRDVKSSNLVIDDRWCVKI 240          
BLAST of mRNA_Ecto-sp13_S_contig13324.2661.1 vs. uniprot
Match: A0A059LGS7_9CHLO (Protein tyrosine kinase n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LGS7_9CHLO)

HSP 1 Score: 84.7 bits (208), Expect = 3.340e-17
Identity = 43/76 (56.58%), Postives = 55/76 (72.37%), Query Frame = 1
Query:  190 CIVTELLSRGSLEDVIRR------GGLRTASYGLILDLALQAARGMLYLHTHNPAIVHRDLKSSNLVIDEHWHVKV 399
            C+ +E  +RGSL DV+RR      GGL  A     L +AL AA+GMLYLH+H+PAIVHRDLKS NL++D+HW VK+
Sbjct:   21 CVASEYCARGSLTDVLRRARSGAGGGLDWARR---LSMALDAAKGMLYLHSHSPAIVHRDLKSPNLLVDKHWRVKI 93          
BLAST of mRNA_Ecto-sp13_S_contig13324.2661.1 vs. uniprot
Match: E1ZCS7_CHLVA (Protein kinase domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZCS7_CHLVA)

HSP 1 Score: 86.7 bits (213), Expect = 4.360e-17
Identity = 51/129 (39.53%), Postives = 67/129 (51.94%), Query Frame = 1
Query:   31 RLRHPNIVLIMGVAFAPPGHRITLDGDGTASMSVSRRRELGFEDLGTSTQGSLCIVTELLSRGSLEDVIRRGGLRTAS------YGLILDLALQAARGMLYLHTHNPAIVHRDLKSSNLVIDEHWHVKV 399
            R+RHPN+V  +G+   PP                                   CI+TE   RGSL DV+R GGLR  +      + L L +A+ AARG+LYLH H+P I+HRD+KS NL++D HW VKV
Sbjct:  605 RMRHPNVVSFLGLCTLPP-----------------------------------CILTEYCQRGSLYDVLR-GGLRNPAAAAELTWPLRLQMAVDAARGLLYLHRHSPPIIHRDVKSPNLLVDRHWAVKV 697          
BLAST of mRNA_Ecto-sp13_S_contig13324.2661.1 vs. uniprot
Match: A0A2P6U1F3_CHLSO (Serine threonine-kinase CTR1 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6U1F3_CHLSO)

HSP 1 Score: 86.3 bits (212), Expect = 6.240e-17
Identity = 51/128 (39.84%), Postives = 64/128 (50.00%), Query Frame = 1
Query:   31 RLRHPNIVLIMGVAFAPPGHRITLDGDGTASMSVSRRRELGFEDLGTSTQGSLCIVTELLSRGSLEDVIRRGGLR-----TASYGLILDLALQAARGMLYLHTHNPAIVHRDLKSSNLVIDEHWHVKV 399
            R+RHPN+V  MG+   PP                                   CIVTE  ++GSL DV+R            S GL L +A+ AARG+LYLH H PAIVHRD+KS NL++DEH+  KV
Sbjct: 1321 RMRHPNVVSFMGICLTPP-----------------------------------CIVTEWCAKGSLFDVLRSAARHPDRAAVLSMGLRLQMAVDAARGLLYLHRHVPAIVHRDVKSPNLLVDEHYRCKV 1413          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13324.2661.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K8N7_9PHAE1.180e-7799.19Protein kinase domain-containing protein n=1 Tax=E... [more]
D7FTH4_ECTSI2.300e-6887.14Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A812V665_SYMMI4.320e-2445.45SIS8 protein (Fragment) n=1 Tax=Symbiodinium micro... [more]
A0A7S0C4K0_9STRA4.210e-2043.48Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A482SNM6_9ARCH8.790e-1860.00Protein kinase domain-containing protein n=1 Tax=a... [more]
A0A5J4XKT0_9CHLO9.230e-1839.06PAS domain-containing tyrosine kinase n=1 Tax=Treb... [more]
A0A7S2RKW5_9STRA2.930e-1742.07Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A059LGS7_9CHLO3.340e-1756.58Protein tyrosine kinase n=1 Tax=Helicosporidium sp... [more]
E1ZCS7_CHLVA4.360e-1739.53Protein kinase domain-containing protein n=1 Tax=C... [more]
A0A2P6U1F3_CHLSO6.240e-1739.84Serine threonine-kinase CTR1 n=1 Tax=Chlorella sor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13324contigEcto-sp13_S_contig13324:215..1770 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score233.8
Seed ortholog evalue4.9e-59
Seed eggNOG ortholog2880.D7FTH4
Model size417
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
Ec32 ortholog descriptionProtein kinase-like domain
Ec32 orthologEc-21_001390.2
Cds size417
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462711.9341-CDS-Ecto-sp13_S_contig13324:214..3371681462711.9341-CDS-Ecto-sp13_S_contig13324:214..337Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13324 215..337 -
1681462711.9479313-CDS-Ecto-sp13_S_contig13324:1115..12431681462711.9479313-CDS-Ecto-sp13_S_contig13324:1115..1243Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13324 1116..1243 -
1681462711.9582846-CDS-Ecto-sp13_S_contig13324:1604..17701681462711.9582846-CDS-Ecto-sp13_S_contig13324:1604..1770Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13324 1605..1770 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13324.2661.1prot_Ecto-sp13_S_contig13324.2661.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13324 215..1770 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13324.2661.1

>prot_Ecto-sp13_S_contig13324.2661.1 ID=prot_Ecto-sp13_S_contig13324.2661.1|Name=mRNA_Ecto-sp13_S_contig13324.2661.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=139bp
MCILPSPPPPRLRHPNIVLIMGVAFAPPGHRITLDGDGTASMSVSRRREL
GFEDLGTSTQGSLCIVTELLSRGSLEDVIRRGGLRTASYGLILDLALQAA
RGMLYLHTHNPAIVHRDLKSSNLVIDEHWHVKVRKDTP*
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mRNA from alignment at Ecto-sp13_S_contig13324:215..1770-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13324.2661.1 ID=mRNA_Ecto-sp13_S_contig13324.2661.1|Name=mRNA_Ecto-sp13_S_contig13324.2661.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1556bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13324:215..1770- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGCATATTACCCTCCCCCCCCCCACCCAGGTTGCGTCACCCCAACAT CGTGTTGATTATGGGGGTGGCTTTCGCTCCCCCAGGGCACCGGATCACGC TGGACGGCGACGGGACGGCGTCCATGTCGGTCAGCAGGAGGAGGGAGCTC GGCTTCGAGGACTTAGGTAAGAGAGCGATTTTTGTCAAAGTCAGTGTCAG CACAGCACTCGTGACACCTCGCCGGGCGCCGTCGTTGTGCTTATCGCTGC AAGGTTGTAAGGCTTTGATAGGAGACGCGATCGAGCGCCGCTCGTCTCGG TGTCCCGCCGTACTTTTTTCGCTCCAGCGGCTCAGCAATGCTTCAGTTTT TTTGCCGCCACTGGAAAAAGGGGGAGCGCGCTTTGAGAATAGAGGCCACC GGCGAGGCGCCCCAGGCTTGCAGCTCTATCATAATGCGCGTAGCTCCGTT GGGTGTGCTGTGCAGTAGCACCCCTGACACCCGCTATGCCGCGTGTTGTT GTACATGCGGGAACCTCCCCCACGCAGGGACTAGTACCCAGGGGAGCCTT TGCATCGTGACGGAGCTCCTGTCCCGCGGCAGTCTGGAGGACGTCATCCG AAGAGGAGGCCTGCGCACGGCAAGCTACGGCTTGATTCTGGACCTGGCTC TCCAGGTCGGTACAGCACCTGCCTTTTTCTTTGTCTGCTGTGTTGTCGCG TGCCGCCCGTCTCTTTTTTTTGTCCCGATTATCGCCTGGCCTGCGTAGTA GGCAGGTGTCTGACGCGTGATGGCAGCCTCCCGCCAGACGTCAAAACCTG CACAGCGTGCTTTCTGCGCGGGGGATCACCCGCTCTGGGTGGGATGCGCT TCGCCACTGTCGTGCTTTGTGCGTGCTGCGGCTGGAACTTGGGCATTGGC GTGCGTACCGTGTCCGCCGCATGTGGATGATTTTCTATTGGGCATTCTCG TGTTCGGTGTTGTTTTCGCCCTATGGTGTGGTTTTTGAACCCGTCAGCTG CTGTCGGTCGTGGACGCTTGAGCCCGGGTGCTCAATGTCATTGGCTTTTC GACGTGTCTAGTTAGGGATACAAACTAGCAGCGGGAGCGAGGAGAGCCAT CGCAACCCCCTCCGGCTCCACCTATGTAATGACTGTGCCATTCGGTCGCG GCAATTTTACTTTCATCTCTCAGCGCCTTCGTATGGGATGTGGCGATATG TATTGCACTCCCTACTGTGAAGGGGCTCCCTACTGTGAAGGGGAGACAGG CTTGCCACGGTCGGCCTAGCCTACCCCATATTGTCGTGCTGCAGGGTGTC GCGATTGGCCCCCACGCTGCTGTCCCCAGGCATTCTCGGCAAACAGCCTG TTTCTGTATCTATACATTTCAAACTCCAAGCCTTTTCCCATGTTGTTGGG TTCATGCCCTCCCCCTCCCGGCTGTTGCTCAAGGCGGCGCGCGGGATGCT TTACTTGCACACACACAACCCGGCGATCGTGCACCGGGACTTGAAAAGCA GCAACCTTGTCATCGACGAACACTGGCATGTGAAGGTAAGGAAGGACACA CCCTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13324:215..1770-

>mRNA_Ecto-sp13_S_contig13324.2661.1 ID=mRNA_Ecto-sp13_S_contig13324.2661.1|Name=mRNA_Ecto-sp13_S_contig13324.2661.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=417bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13324:215..1770- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGCATATTACCCTCCCCCCCCCCACCCAGGTTGCGTCACCCCAACAT
CGTGTTGATTATGGGGGTGGCTTTCGCTCCCCCAGGGCACCGGATCACGC
TGGACGGCGACGGGACGGCGTCCATGTCGGTCAGCAGGAGGAGGGAGCTC
GGCTTCGAGGACTTAGGGACTAGTACCCAGGGGAGCCTTTGCATCGTGAC
GGAGCTCCTGTCCCGCGGCAGTCTGGAGGACGTCATCCGAAGAGGAGGCC
TGCGCACGGCAAGCTACGGCTTGATTCTGGACCTGGCTCTCCAGGCGGCG
CGCGGGATGCTTTACTTGCACACACACAACCCGGCGATCGTGCACCGGGA
CTTGAAAAGCAGCAACCTTGTCATCGACGAACACTGGCATGTGAAGGTAA
GGAAGGACACACCCTAG
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