mRNA_Ecto-sp13_S_contig13301.2649.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig13301.2649.1 vs. uniprot
Match: D7FXG1_ECTSI (ATP synthase subunit beta n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXG1_ECTSI) HSP 1 Score: 249 bits (635), Expect = 1.620e-78 Identity = 126/127 (99.21%), Postives = 127/127 (100.00%), Query Frame = 1
Query: 1 VLSRQIAELGIYPAVDPLDSTSRMLDPRVIGDEHYETARATQKLLQDYKGLQDIIAILGMDELSEDDKLTVARARKVQRFMSQPFTVAEVFTGTKGVFVSLEDTIKGFQEILSGAHDDLPEGAFYMV 381
VLSRQIAELGIYPAVDPLDSTSRMLDPRVIGDEHYETARATQKLLQDYKGLQ+IIAILGMDELSEDDKLTVARARKVQRFMSQPFTVAEVFTGTKGVFVSLEDTIKGFQEILSGAHDDLPEGAFYMV
Sbjct: 364 VLSRQIAELGIYPAVDPLDSTSRMLDPRVIGDEHYETARATQKLLQDYKGLQEIIAILGMDELSEDDKLTVARARKVQRFMSQPFTVAEVFTGTKGVFVSLEDTIKGFQEILSGAHDDLPEGAFYMV 490
BLAST of mRNA_Ecto-sp13_S_contig13301.2649.1 vs. uniprot
Match: A0A836CJ45_9STRA (ATP synthase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ45_9STRA) HSP 1 Score: 237 bits (604), Expect = 6.720e-74 Identity = 119/127 (93.70%), Postives = 122/127 (96.06%), Query Frame = 1
Query: 1 VLSRQIAELGIYPAVDPLDSTSRMLDPRVIGDEHYETARATQKLLQDYKGLQDIIAILGMDELSEDDKLTVARARKVQRFMSQPFTVAEVFTGTKGVFVSLEDTIKGFQEILSGAHDDLPEGAFYMV 381
VLSRQIAELGIYPAVDPLDSTSRMLDPR+IGDEHY+ ARATQKLLQDYK LQDIIAILGMDELSEDDKLTVARARKVQRFMSQPFTVAEVFTGTKGVFV LEDTI GF+EILSGAHDDLPE AFYMV
Sbjct: 363 VLSRQIAELGIYPAVDPLDSTSRMLDPRIIGDEHYKVARATQKLLQDYKSLQDIIAILGMDELSEDDKLTVARARKVQRFMSQPFTVAEVFTGTKGVFVKLEDTISGFKEILSGAHDDLPEAAFYMV 489
BLAST of mRNA_Ecto-sp13_S_contig13301.2649.1 vs. uniprot
Match: A0A7S3HHB8_9STRA (H(+)-transporting two-sector ATPase n=2 Tax=Eukaryota TaxID=2759 RepID=A0A7S3HHB8_9STRA) HSP 1 Score: 219 bits (558), Expect = 3.840e-71 Identity = 113/126 (89.68%), Postives = 115/126 (91.27%), Query Frame = 1
Query: 1 VLSRQIAELGIYPAVDPLDSTSRMLDPRVIGDEHYETARATQKLLQDYKGLQDIIAILGMDELSEDDKLTVARARKVQRFMSQPFTVAEVFTGTKGVFVSLEDTIKGFQEILSGAHDDLPEGAFYM 378
VLSRQIAELGIYPAVDPLDSTSRMLDPRVIG+ HY+TARATQKLLQDYKGLQDIIAILGMDELSEDDKLTVARARK QRFMSQPF VAEVFTG G FV LEDTIKGFQEILSG D LPE AFYM
Sbjct: 31 VLSRQIAELGIYPAVDPLDSTSRMLDPRVIGEVHYQTARATQKLLQDYKGLQDIIAILGMDELSEDDKLTVARARKAQRFMSQPFHVAEVFTGRGGRFVQLEDTIKGFQEILSGKLDSLPESAFYM 156
BLAST of mRNA_Ecto-sp13_S_contig13301.2649.1 vs. uniprot
Match: A0A7S2SJ94_9STRA (ATP synthase subunit beta n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SJ94_9STRA) HSP 1 Score: 228 bits (582), Expect = 1.430e-70 Identity = 115/126 (91.27%), Postives = 118/126 (93.65%), Query Frame = 1
Query: 1 VLSRQIAELGIYPAVDPLDSTSRMLDPRVIGDEHYETARATQKLLQDYKGLQDIIAILGMDELSEDDKLTVARARKVQRFMSQPFTVAEVFTGTKGVFVSLEDTIKGFQEILSGAHDDLPEGAFYM 378
VLSR IA LGIYPAVDPLDSTSRMLDPRV+GD HYE ARATQKLLQDYKGLQDIIAILGMDELSEDDKLTVARARKVQRFMSQPFTVAEVFTGTKG FVSLEDTIKGF EIL+G HDD+PE AFYM
Sbjct: 369 VLSRNIASLGIYPAVDPLDSTSRMLDPRVLGDTHYEMARATQKLLQDYKGLQDIIAILGMDELSEDDKLTVARARKVQRFMSQPFTVAEVFTGTKGKFVSLEDTIKGFGEILAGEHDDIPEAAFYM 494
BLAST of mRNA_Ecto-sp13_S_contig13301.2649.1 vs. uniprot
Match: A0A7S2GC43_9STRA (ATP synthase subunit beta n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2GC43_9STRA) HSP 1 Score: 228 bits (580), Expect = 2.710e-70 Identity = 113/126 (89.68%), Postives = 120/126 (95.24%), Query Frame = 1
Query: 1 VLSRQIAELGIYPAVDPLDSTSRMLDPRVIGDEHYETARATQKLLQDYKGLQDIIAILGMDELSEDDKLTVARARKVQRFMSQPFTVAEVFTGTKGVFVSLEDTIKGFQEILSGAHDDLPEGAFYM 378
VLSR IA+LGIYPAVDPLDSTSRMLDP+VIG EHY+ ARATQKLLQDYKGLQDIIAILGMDELSEDDKLTVARARKVQ+FMSQPFTVAEVFTGTKG FVSL D+IKGF EI+SGAHDD+PEGAFYM
Sbjct: 369 VLSRNIAQLGIYPAVDPLDSTSRMLDPKVIGSEHYDLARATQKLLQDYKGLQDIIAILGMDELSEDDKLTVARARKVQKFMSQPFTVAEVFTGTKGEFVSLADSIKGFSEIISGAHDDVPEGAFYM 494
BLAST of mRNA_Ecto-sp13_S_contig13301.2649.1 vs. uniprot
Match: A0A7S2EIC6_TRICV (ATP synthase subunit beta n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EIC6_TRICV) HSP 1 Score: 224 bits (572), Expect = 3.510e-69 Identity = 113/127 (88.98%), Postives = 119/127 (93.70%), Query Frame = 1
Query: 1 VLSRQIAELGIYPAVDPLDSTSRMLDPRVIGDEHYETARATQKLLQDYKGLQDIIAILGMDELSEDDKLTVARARKVQRFMSQPFTVAEVFTGTKGVFVSLEDTIKGFQEILSGAHDDLPEGAFYMV 381
VLSR IAELGIYPAVDPLDSTSRML PRVIGDEHYE ARATQKLLQDYKGLQDIIAILGMDELSEDDKLTVARARKVQ+FMSQPF VAEVFTGT G FVSLE TI+GF++I++G HDDLPEGAFYMV
Sbjct: 359 VLSRAIAELGIYPAVDPLDSTSRMLTPRVIGDEHYEVARATQKLLQDYKGLQDIIAILGMDELSEDDKLTVARARKVQKFMSQPFHVAEVFTGTAGKFVSLEQTIQGFKQIINGEHDDLPEGAFYMV 485
BLAST of mRNA_Ecto-sp13_S_contig13301.2649.1 vs. uniprot
Match: A0A1Z5JNL5_FISSO (ATP synthase subunit beta n=2 Tax=Bacillariophycidae TaxID=33850 RepID=A0A1Z5JNL5_FISSO) HSP 1 Score: 223 bits (569), Expect = 9.850e-69 Identity = 113/127 (88.98%), Postives = 117/127 (92.13%), Query Frame = 1
Query: 1 VLSRQIAELGIYPAVDPLDSTSRMLDPRVIGDEHYETARATQKLLQDYKGLQDIIAILGMDELSEDDKLTVARARKVQRFMSQPFTVAEVFTGTKGVFVSLEDTIKGFQEILSGAHDDLPEGAFYMV 381
VLSR IAELGIYPAVDPLDSTSRMLDPRVIG HY+ ARATQKLLQDYKGLQDIIAILGMDELSEDDKLTVARARKVQ+FMSQPF VAEVFTGT G FVSLEDTI GF EI+SGA+D LPEGAFYMV
Sbjct: 359 VLSRSIAELGIYPAVDPLDSTSRMLDPRVIGQRHYDVARATQKLLQDYKGLQDIIAILGMDELSEDDKLTVARARKVQKFMSQPFHVAEVFTGTAGKFVSLEDTINGFSEIISGAYDSLPEGAFYMV 485
BLAST of mRNA_Ecto-sp13_S_contig13301.2649.1 vs. uniprot
Match: A0A3D1GVQ4_9PROT (F0F1 ATP synthase subunit beta (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3D1GVQ4_9PROT) HSP 1 Score: 209 bits (532), Expect = 3.610e-67 Identity = 104/127 (81.89%), Postives = 114/127 (89.76%), Query Frame = 1
Query: 1 VLSRQIAELGIYPAVDPLDSTSRMLDPRVIGDEHYETARATQKLLQDYKGLQDIIAILGMDELSEDDKLTVARARKVQRFMSQPFTVAEVFTGTKGVFVSLEDTIKGFQEILSGAHDDLPEGAFYMV 381
VLSRQIAELGIYPAVDPLDSTSR+LDPRV+GDEHY TAR Q++LQ YK LQDIIAILGMDELSE+DKL VARARK+QRF+SQPF VAEVFTGT GVFVSLE+ IKGFQ I+ G +DDLPE AFYMV
Sbjct: 31 VLSRQIAELGIYPAVDPLDSTSRVLDPRVVGDEHYNTAREVQEVLQQYKSLQDIIAILGMDELSEEDKLVVARARKIQRFLSQPFHVAEVFTGTPGVFVSLEENIKGFQGIVRGDYDDLPEAAFYMV 157
BLAST of mRNA_Ecto-sp13_S_contig13301.2649.1 vs. uniprot
Match: A0A7R9UFC7_9STRA (ATP synthase subunit beta n=3 Tax=Pinguiochrysidaceae TaxID=1004268 RepID=A0A7R9UFC7_9STRA) HSP 1 Score: 220 bits (561), Expect = 4.670e-67 Identity = 109/127 (85.83%), Postives = 119/127 (93.70%), Query Frame = 1
Query: 1 VLSRQIAELGIYPAVDPLDSTSRMLDPRVIGDEHYETARATQKLLQDYKGLQDIIAILGMDELSEDDKLTVARARKVQRFMSQPFTVAEVFTGTKGVFVSLEDTIKGFQEILSGAHDDLPEGAFYMV 381
VLSR IAELGIYPAVDPLDSTSRMLDPR++G+EHYE ARA QKLLQDYK LQDIIAILGMDELSEDDKLTVARARKV+RF+SQPF VAEVFTGT G FV+L+D+IK F+EILSGAHD+LPEGAFYMV
Sbjct: 407 VLSRSIAELGIYPAVDPLDSTSRMLDPRIVGEEHYELARAIQKLLQDYKSLQDIIAILGMDELSEDDKLTVARARKVERFLSQPFHVAEVFTGTPGKFVALDDSIKAFKEILSGAHDELPEGAFYMV 533
BLAST of mRNA_Ecto-sp13_S_contig13301.2649.1 vs. uniprot
Match: A0A7S0AY30_9DINO (H(+)-transporting two-sector ATPase n=2 Tax=Dinophyceae TaxID=2864 RepID=A0A7S0AY30_9DINO) HSP 1 Score: 208 bits (529), Expect = 7.960e-67 Identity = 101/127 (79.53%), Postives = 114/127 (89.76%), Query Frame = 1
Query: 1 VLSRQIAELGIYPAVDPLDSTSRMLDPRVIGDEHYETARATQKLLQDYKGLQDIIAILGMDELSEDDKLTVARARKVQRFMSQPFTVAEVFTGTKGVFVSLEDTIKGFQEILSGAHDDLPEGAFYMV 381
VLSRQIAELGIYPAVDPLDSTSRMLDP ++G HY+ AR+TQK+LQDYK LQDIIAILGMDELSE+DKLTVARARKVQRF+SQPF VAE+FTGT G FV LE TI+ F+E+LSGA DD+PE AFYM+
Sbjct: 21 VLSRQIAELGIYPAVDPLDSTSRMLDPSIVGQRHYDIARSTQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKVQRFLSQPFFVAEIFTGTPGAFVDLETTIQDFEEVLSGACDDIPEAAFYMI 147 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13301.2649.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig13301.2649.1 >prot_Ecto-sp13_S_contig13301.2649.1 ID=prot_Ecto-sp13_S_contig13301.2649.1|Name=mRNA_Ecto-sp13_S_contig13301.2649.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=127bp VLSRQIAELGIYPAVDPLDSTSRMLDPRVIGDEHYETARATQKLLQDYKGback to top mRNA from alignment at Ecto-sp13_S_contig13301:3371..4557- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig13301.2649.1 ID=mRNA_Ecto-sp13_S_contig13301.2649.1|Name=mRNA_Ecto-sp13_S_contig13301.2649.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1187bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13301:3371..4557- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13301:3371..4557- >mRNA_Ecto-sp13_S_contig13301.2649.1 ID=mRNA_Ecto-sp13_S_contig13301.2649.1|Name=mRNA_Ecto-sp13_S_contig13301.2649.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=381bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13301:3371..4557- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |