mRNA_Ecto-sp13_S_contig133.2644.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig133.2644.1
Unique NamemRNA_Ecto-sp13_S_contig133.2644.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig133.2644.1 vs. uniprot
Match: A0A6H5KF25_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF25_9PHAE)

HSP 1 Score: 192 bits (488), Expect = 1.250e-50
Identity = 98/106 (92.45%), Postives = 102/106 (96.23%), Query Frame = 2 
Query:  809 QVLYMAHDLGALNENRKQRETRQRKGFLRELEAMIRLRSPNTVNVYGAVTSLSDRMALVMELLSNGDLLTLSRRSTKPLSEEKSRQIIGDICAGMAFLHGKNTVHG 1126
            +VLY+AHDLGAL+EN+KQRETRQRKGFLRELEAMIRLRSPNTVNVYGAVTSLSDRM LVMELL NGDLLTL RRSTKPL EEKSRQIIGDICAGMAFLHGKNTVHG
Sbjct:  850 KVLYIAHDLGALDENQKQRETRQRKGFLRELEAMIRLRSPNTVNVYGAVTSLSDRMVLVMELLPNGDLLTLLRRSTKPLPEEKSRQIIGDICAGMAFLHGKNTVHG 955
[Close]
BLAST of mRNA_Ecto-sp13_S_contig133.2644.1 vs. uniprot
Match: D7G7X7_ECTSI (ATP binding / amino acid binding / protein kinase/ protein serine/threonine kinase/ protein-tyrosine n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7X7_ECTSI)

HSP 1 Score: 190 bits (483), Expect = 5.560e-50
Identity = 97/106 (91.51%), Postives = 101/106 (95.28%), Query Frame = 2 
Query:  809 QVLYMAHDLGALNENRKQRETRQRKGFLRELEAMIRLRSPNTVNVYGAVTSLSDRMALVMELLSNGDLLTLSRRSTKPLSEEKSRQIIGDICAGMAFLHGKNTVHG 1126
            +VLY+AHDLGAL+EN+KQRETRQRKGFLRELEAMIRLRSPNTVNVYGAVTSLSDRM LVMELL NGDLLTL RRST PL EEKSRQIIGDICAGMAFLHGKNTVHG
Sbjct:  825 KVLYIAHDLGALDENQKQRETRQRKGFLRELEAMIRLRSPNTVNVYGAVTSLSDRMVLVMELLPNGDLLTLLRRSTNPLPEEKSRQIIGDICAGMAFLHGKNTVHG 930
[Close]
BLAST of mRNA_Ecto-sp13_S_contig133.2644.1 vs. uniprot
Match: A0A6H5JSI8_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI8_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 1.460e-39
Identity = 82/106 (77.36%), Postives = 93/106 (87.74%), Query Frame = 2 
Query:  809 QVLYMAHDLGALNENRKQRETRQRKGFLRELEAMIRLRSPNTVNVYGAVTSLSDRMALVMELLSNGDLLTLSRRSTKPLSEEKSRQIIGDICAGMAFLHGKNTVHG 1126
            +VLY+AHD+GAL+EN+KQRETR+R+ FLRELEAMIRLRS NTVNV+GAVTSL DRM LVMELL+ GDLLTL R+S K L EE+SR II DIC GMAFLH KNTVHG
Sbjct:  647 KVLYIAHDVGALDENQKQRETRERRAFLRELEAMIRLRSLNTVNVFGAVTSLPDRMVLVMELLAGGDLLTLLRKSKKALPEEQSRLIIRDICTGMAFLHSKNTVHG 752
[Close]
BLAST of mRNA_Ecto-sp13_S_contig133.2644.1 vs. uniprot
Match: D7FL77_ECTSI (Protein tyrosine kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL77_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 2.990e-35
Identity = 72/106 (67.92%), Postives = 86/106 (81.13%), Query Frame = 2 
Query:  809 QVLYMAHDLGALNENRKQRETRQRKGFLRELEAMIRLRSPNTVNVYGAVTSLSDRMALVMELLSNGDLLTLSRRSTKPLSEEKSRQIIGDICAGMAFLHGKNTVHG 1126
            +VL + HDLGA +EN++QRET QR+ FLRELEAMIRLRSPNTVNVYGAVTSL DR+ LVMEL+  GDL T+   S +PL EE+SR+I+ DIC GMAFL  + TVHG
Sbjct:  197 KVLRITHDLGAFDENQQQRETSQRRAFLRELEAMIRLRSPNTVNVYGAVTSLPDRVVLVMELMPGGDLQTILTSSQEPLPEEQSRRIVRDICTGMAFLQSRKTVHG 302
[Close]
BLAST of mRNA_Ecto-sp13_S_contig133.2644.1 vs. uniprot
Match: D7FL57_ECTSI (Hypothetical leucine rich repeat kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL57_ECTSI)

HSP 1 Score: 142 bits (359), Expect = 1.360e-33
Identity = 77/106 (72.64%), Postives = 87/106 (82.08%), Query Frame = 2 
Query:  809 QVLYMAHDLGALNENRKQRETRQRKGFLRELEAMIRLRSPNTVNVYGAVTSLSDRMALVMELLSNGDLLTLSRRSTKPLSEEKSRQIIGDICAGMAFLHGKNTVHG 1126
            +VL++A   GAL+E +KQRE  Q + FLRELEAMIRLRS NTVNVYGAVTSL DRM LVMELL+ GDLLTL R+S K L  ++SRQII DIC GMAFLHGKNTVHG
Sbjct:  732 KVLHIAQT-GALDETQKQREASQHRAFLRELEAMIRLRSLNTVNVYGAVTSLPDRMVLVMELLAGGDLLTLLRKSKKALPGQQSRQIIRDICTGMAFLHGKNTVHG 836
[Close]
BLAST of mRNA_Ecto-sp13_S_contig133.2644.1 vs. uniprot
Match: D7G7F2_ECTSI (Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs/ leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7F2_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 1.970e-33
Identity = 76/106 (71.70%), Postives = 88/106 (83.02%), Query Frame = 2 
Query:  809 QVLYMAHDLGALNENRKQRETRQRKGFLRELEAMIRLRSPNTVNVYGAVTSLSDRMALVMELLSNGDLLTLSRRSTKPLSEEKSRQIIGDICAGMAFLHGKNTVHG 1126
            +VL++A  +GAL+E +KQRE  Q + FLRELEAMIRLRS NTVNVYGAVTSL DRM LVMELL+ GDLLTL R+S K L  ++SR+II DIC GMAFLHGKNTVHG
Sbjct:  910 KVLHIAR-MGALDETQKQREASQHRAFLRELEAMIRLRSLNTVNVYGAVTSLPDRMVLVMELLAGGDLLTLLRKSKKALPGQQSRRIIRDICTGMAFLHGKNTVHG 1014
[Close]
BLAST of mRNA_Ecto-sp13_S_contig133.2644.1 vs. uniprot
Match: D8LRE9_ECTSI (Transmembrane receptor kinase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRE9_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 1.110e-32
Identity = 77/118 (65.25%), Postives = 88/118 (74.58%), Query Frame = 2 
Query:  809 QVLYMAHDLGALNEN------------RKQRETRQRKGFLRELEAMIRLRSPNTVNVYGAVTSLSDRMALVMELLSNGDLLTLSRRSTKPLSEEKSRQIIGDICAGMAFLHGKNTVHG 1126
            +VL +A DLG L+EN              +RE  QR+ FLREL+AMIRLRSP+TVNVYGAVTSL DRM LVMELLS GDL TL R   +PL EE+SR+IIGDICAGMAFLH K+TVHG
Sbjct:  688 KVLLIARDLGTLSENDALESPLAGRSNTTKREDSQRRAFLRELDAMIRLRSPHTVNVYGAVTSLPDRMVLVMELLSGGDLRTLLRNYQQPLPEEQSRRIIGDICAGMAFLHSKDTVHG 805
[Close]
BLAST of mRNA_Ecto-sp13_S_contig133.2644.1 vs. uniprot
Match: D8LAU2_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAU2_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 5.040e-32
Identity = 71/118 (60.17%), Postives = 87/118 (73.73%), Query Frame = 2 
Query:  809 QVLYMAHDLGALNE------------NRKQRETRQRKGFLRELEAMIRLRSPNTVNVYGAVTSLSDRMALVMELLSNGDLLTLSRRSTKPLSEEKSRQIIGDICAGMAFLHGKNTVHG 1126
            +V+++AHD GAL E            ++ QRE  QR+ FLRELEAMIRL+SP+TVNVYGAVT L DR+ LVMELLS GDL TL     +P  EE+SR+IIGD+C+GMAFLH K+TVHG
Sbjct:  125 KVVHVAHDQGALREIYELGQSVASSHSKTQREQNQRRAFLRELEAMIRLQSPHTVNVYGAVTCLPDRLILVMELLSGGDLRTLLSSCDQPFPEEQSRRIIGDVCSGMAFLHSKDTVHG 242
[Close]
BLAST of mRNA_Ecto-sp13_S_contig133.2644.1 vs. uniprot
Match: A0A6H5K8V7_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8V7_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 8.000e-31
Identity = 72/117 (61.54%), Postives = 86/117 (73.50%), Query Frame = 2 
Query:  809 QVLYMAHDLG-----ALNENRK------QRETRQRKGFLRELEAMIRLRSPNTVNVYGAVTSLSDRMALVMELLSNGDLLTLSRRSTKPLSEEKSRQIIGDICAGMAFLHGKNTVHG 1126
            +VLY+ HDLG     A+ E+RK      +R   QRKGFLRE+ AMIRLRSP+TV ++GA+TSL DR+ LVMELL  GDL TL + S +PL EE+SR IIGDICAGM FLH K TVHG
Sbjct:  165 KVLYIQHDLGRRDDSAILESRKDGHSNAERVNSQRKGFLREMNAMIRLRSPHTVVLFGAITSLPDRLVLVMELLPGGDLQTLLKNSEQPLPEEQSRMIIGDICAGMMFLHSKETVHG 281
[Close]
BLAST of mRNA_Ecto-sp13_S_contig133.2644.1 vs. uniprot
Match: A0A6H5KY76_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY76_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 1.030e-28
Identity = 73/130 (56.15%), Postives = 88/130 (67.69%), Query Frame = 2 
Query:  773 NRRCSVAALKPTQVLYMAHDLGALN------------ENRKQRETRQRKGFLRELEAMIRLRSPNTVNVYGAVTSLSDRMALVMELLSNGDLLTLSRRSTKPLSEEKSRQIIGDICAGMAFLHGKNTVHG 1126
            NRR + A     +VL++AHDLG               ++  +RE  QRK FLRELEAMIRLRSP+TV VYGA+TS  DR+ LVMELL+ GDL  L + S +PL EE+ R+IIGDICAGM FLH K TVHG
Sbjct:  940 NRRNAAA-----KVLHIAHDLGKPGGQEDLLEARVDGQSNPEREKSQRKAFLRELEAMIRLRSPHTVGVYGAITSRPDRLVLVMELLAGGDLRRLLKNSDQPLPEEQCRRIIGDICAGMHFLHSKETVHG 1064
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig133.2644.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KF25_9PHAE1.250e-5092.45Protein kinase domain-containing protein n=1 Tax=E... [more]
D7G7X7_ECTSI5.560e-5091.51ATP binding / amino acid binding / protein kinase/... [more]
A0A6H5JSI8_9PHAE1.460e-3977.36Protein kinase domain-containing protein n=1 Tax=E... [more]
D7FL77_ECTSI2.990e-3567.92Protein tyrosine kinase n=1 Tax=Ectocarpus silicul... [more]
D7FL57_ECTSI1.360e-3372.64Hypothetical leucine rich repeat kinase n=1 Tax=Ec... [more]
D7G7F2_ECTSI1.970e-3371.70Tyrosine kinase specific for activated (GTP-bound)... [more]
D8LRE9_ECTSI1.110e-3265.25Transmembrane receptor kinase n=2 Tax=Ectocarpus s... [more]
D8LAU2_ECTSI5.040e-3260.17Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5K8V7_9PHAE8.000e-3161.54Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5KY76_9PHAE1.030e-2856.15Protein kinase domain-containing protein n=1 Tax=E... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig133contigEcto-sp13_S_contig133:9587..10712 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score190.7
Seed ortholog evalue5.9e-46
Seed eggNOG ortholog2880.D7G7X7
Preferred nameRIPK4
Model size1126
KEGG koko:K02861,ko:K08846,ko:K08847,ko:K08848,ko:K14767,ko:K16175,ko:K16289
KEGG Pathwayko04064,ko04210,ko04217,ko04390,ko04391,ko04530,ko04620,ko04621,ko04622,ko04623,ko04668,ko04722,ko05131,ko05152,ko05160,ko05165,ko05169,ko05203,map04064,map04210,map04217,map04390,map04391,map04530,map04620,map04621,map04622,map04623,map04668,map04722,map05131,map05152,map05160,map05165,map05169,map05203
Hectar predicted targeting categoryother localisation
GOsGO:0002009,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006355,GO:0008150,GO:0009653,GO:0009888,GO:0009889,GO:0010468,GO:0010556,GO:0016020,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0032502,GO:0044093,GO:0044424,GO:0044464,GO:0048518,GO:0048729,GO:0048856,GO:0050789,GO:0050794,GO:0051090,GO:0051091,GO:0051092,GO:0051171,GO:0051252,GO:0060255,GO:0060429,GO:0065007,GO:0065009,GO:0080090,GO:1903506,GO:2000112,GO:2001141
Exons1
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG0515@1,COG4886@1,KOG0192@2759,KOG0619@2759
EC2.7.11.1
Cds size519
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03009
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462710.9756455-UTR-Ecto-sp13_S_contig133:9586..101931681462710.9756455-UTR-Ecto-sp13_S_contig133:9586..10193Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig133 9587..10193 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462710.987321-CDS-Ecto-sp13_S_contig133:10193..107121681462710.987321-CDS-Ecto-sp13_S_contig133:10193..10712Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig133 10194..10712 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig133.2644.1prot_Ecto-sp13_S_contig133.2644.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig133 10194..10712 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig133.2644.1

>prot_Ecto-sp13_S_contig133.2644.1 ID=prot_Ecto-sp13_S_contig133.2644.1|Name=mRNA_Ecto-sp13_S_contig133.2644.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=173bp
MDLKPLWNPIASLCRINELPNLSTSYDSHRRRPATCLRVAGIRLFQCSSN
THKAANRRCSVAALKPTQVLYMAHDLGALNENRKQRETRQRKGFLRELEA
MIRLRSPNTVNVYGAVTSLSDRMALVMELLSNGDLLTLSRRSTKPLSEEK
SRQIIGDICAGMAFLHGKNTVHG
back to top

mRNA from alignment at Ecto-sp13_S_contig133:9587..10712+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig133.2644.1 ID=mRNA_Ecto-sp13_S_contig133.2644.1|Name=mRNA_Ecto-sp13_S_contig133.2644.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1126bp|location=Sequence derived from alignment at Ecto-sp13_S_contig133:9587..10712+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCTACACCGCGGCGCTTGCCTCGGGCAGGGGAGGCAGCGACGTCAAGTCG
CCTTCCGCACATGACAGGAAGGCGTCGCCGCGTCCGTACGCGCCGGCGGA
AGTGGTCGGCGGTGGAGACGTTGTTCCACGGGCGGCAACGACAGCAGTCG
TCTTTGGTGCTGCCGAAGATCGTGATGCGGCCGGGCTTGGAGGCGATGGG
GGTGCGGCAGTTCTAACCTCAGCGAAAAGTTCGACAACGGACACTACGTC
CACCGCCACACACTCCACCGCAAACGTCTTCACTCACGAACGGGCAGAAC
TTGCCGTGTTTCAACAAAGGCAAGGCGTACCGGAGGCCGCCCTGGTTGCT
AGCGGATCTCGACTAGAACAAGCCTCCGGCAGCCGCGGCGGTGGATAGAA
TGTAGGCAGTAGTGCTCAACGGCATCAACTCGTGCCAGCAAGGCCGACCT
CACCAAGGCCAATTGGCGGGACGGTGGGACGTCGTCATGATGGTGTTTTC
GTGTTGTGTCTTCGTCCACGGCGAGGCAGCCGTCGGTATCTATAACATGC
CCGGGTTGATCGACCACGACTTGGGCTGCAACGAGCCGCACTCACCGGCA
CGTTTTGATGGACCTGAAACCTTTATGGAACCCCATCGCCAGCCTTTGTC
GAATAAATGAATTGCCGAATCTAAGCACAAGCTACGACAGTCACCGTCGT
CGCCCCGCCACCTGTCTCCGTGTAGCCGGTATTCGATTGTTTCAGTGTTC
CTCAAATACACACAAAGCTGCGAATCGACGTTGTTCAGTTGCGGCATTGA
AACCTACACAGGTGCTATACATGGCCCACGACTTGGGCGCTCTCAACGAG
AACCGAAAACAGCGGGAGACGAGGCAGCGCAAGGGATTCCTGCGGGAGCT
GGAGGCCATGATCCGCCTTCGGAGCCCGAACACGGTCAACGTCTACGGGG
CGGTGACGTCTCTGTCAGACCGCATGGCGCTCGTCATGGAGCTGCTCTCC
AACGGAGACCTCCTCACGTTGTCGAGGAGGTCTACGAAGCCGCTCTCCGA
GGAGAAGTCCAGACAGATCATCGGAGACATCTGCGCCGGAATGGCCTTCC
TGCACGGCAAGAACACGGTCCACGGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig133:9587..10712+

>mRNA_Ecto-sp13_S_contig133.2644.1 ID=mRNA_Ecto-sp13_S_contig133.2644.1|Name=mRNA_Ecto-sp13_S_contig133.2644.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=519bp|location=Sequence derived from alignment at Ecto-sp13_S_contig133:9587..10712+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACCTGAAACCTTTATGGAACCCCATCGCCAGCCTTTGTCGAATAAA
TGAATTGCCGAATCTAAGCACAAGCTACGACAGTCACCGTCGTCGCCCCG
CCACCTGTCTCCGTGTAGCCGGTATTCGATTGTTTCAGTGTTCCTCAAAT
ACACACAAAGCTGCGAATCGACGTTGTTCAGTTGCGGCATTGAAACCTAC
ACAGGTGCTATACATGGCCCACGACTTGGGCGCTCTCAACGAGAACCGAA
AACAGCGGGAGACGAGGCAGCGCAAGGGATTCCTGCGGGAGCTGGAGGCC
ATGATCCGCCTTCGGAGCCCGAACACGGTCAACGTCTACGGGGCGGTGAC
GTCTCTGTCAGACCGCATGGCGCTCGTCATGGAGCTGCTCTCCAACGGAG
ACCTCCTCACGTTGTCGAGGAGGTCTACGAAGCCGCTCTCCGAGGAGAAG
TCCAGACAGATCATCGGAGACATCTGCGCCGGAATGGCCTTCCTGCACGG
CAAGAACACGGTCCACGGC
back to top