mRNA_Ecto-sp13_S_contig133.2645.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig133.2645.1
Unique NamemRNA_Ecto-sp13_S_contig133.2645.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig133.2645.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig133contigEcto-sp13_S_contig133:13021..13891 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size871
Hectar predicted targeting categoryother localisation
Exons1
Cds size438
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462710.913546-UTR-Ecto-sp13_S_contig133:13020..131441681462710.913546-UTR-Ecto-sp13_S_contig133:13020..13144Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig133 13021..13144 +
1681462710.9370258-UTR-Ecto-sp13_S_contig133:13582..138911681462710.9370258-UTR-Ecto-sp13_S_contig133:13582..13891Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig133 13583..13891 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462710.924231-CDS-Ecto-sp13_S_contig133:13144..135821681462710.924231-CDS-Ecto-sp13_S_contig133:13144..13582Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig133 13145..13582 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig133.2645.1prot_Ecto-sp13_S_contig133.2645.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig133 13145..13582 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig133.2645.1

>prot_Ecto-sp13_S_contig133.2645.1 ID=prot_Ecto-sp13_S_contig133.2645.1|Name=mRNA_Ecto-sp13_S_contig133.2645.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=146bp
MVASIRQLFVVGTSSTSHFPPPTGISEYTYSTASLSGRQRSGGYGRFSKS
RFAQTKLSGTRLDVGVSRGTFAWMRSRRSWHPNASGGYFAPAVTQHRPFL
STVMQYVQFAPYALRTSTATQSFSTDTSWCTYESSTTNSQKKQWV*
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mRNA from alignment at Ecto-sp13_S_contig133:13021..13891+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig133.2645.1 ID=mRNA_Ecto-sp13_S_contig133.2645.1|Name=mRNA_Ecto-sp13_S_contig133.2645.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=871bp|location=Sequence derived from alignment at Ecto-sp13_S_contig133:13021..13891+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAAGCATGATAGCGTCTCCCCGCACCCTGGCATATTCCATTACGTTACAG
GCTCTTCGCTGCTCGTGCACCAGTTCGCTTCACCACTCTGCTCTGCCAGG
ATAGGTTCCGTACTATGAAACGTGATGGTAGCCTCAATTCGGCAGCTCTT
CGTTGTAGGCACCTCTTCAACCTCGCACTTTCCGCCCCCCACAGGAATCT
CTGAGTACACCTACAGCACCGCGTCGCTTTCAGGACGACAGCGGAGCGGT
GGGTATGGACGTTTCTCCAAGAGCCGTTTCGCTCAAACCAAACTGAGCGG
CACTAGACTCGACGTAGGTGTTTCACGGGGCACCTTCGCTTGGATGAGAT
CTCGACGAAGCTGGCATCCTAACGCATCCGGGGGATATTTCGCCCCCGCT
GTCACCCAACATCGCCCATTTCTAAGCACGGTGATGCAATACGTACAGTT
TGCTCCGTACGCGCTACGCACGTCTACTGCAACCCAATCGTTCTCAACAG
ACACCAGCTGGTGTACATACGAAAGTTCCACGACAAACTCTCAGAAGAAG
CAGTGGGTTTGACGGCGAGGTCGTGACAAGCCGAGTTGAATACTACATAT
AGTTCATGTAGATGGGGACAAAACTACGTAGTGTCGTACCCACGCTGACG
CGCCGAGACCCAGCTCGGGCTCGGCACACCTGCGGGTGTCATCTATCTGG
CTGTGCGTCACCTGGGGGATGCATTTTTGTAGATGTTGATATCGATGGAA
CGACACGCTCCCAGACGCAACAGCAACAACAGAGCATCGGCTATAGTCTG
AGTGTCACGAACCATTATGAGATTTCTTCAAGACTCAAACAACCAGACAC
ATTTACGCTCGGTAGGGTATT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig133:13021..13891+

>mRNA_Ecto-sp13_S_contig133.2645.1 ID=mRNA_Ecto-sp13_S_contig133.2645.1|Name=mRNA_Ecto-sp13_S_contig133.2645.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=438bp|location=Sequence derived from alignment at Ecto-sp13_S_contig133:13021..13891+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTAGCCTCAATTCGGCAGCTCTTCGTTGTAGGCACCTCTTCAACCTC
GCACTTTCCGCCCCCCACAGGAATCTCTGAGTACACCTACAGCACCGCGT
CGCTTTCAGGACGACAGCGGAGCGGTGGGTATGGACGTTTCTCCAAGAGC
CGTTTCGCTCAAACCAAACTGAGCGGCACTAGACTCGACGTAGGTGTTTC
ACGGGGCACCTTCGCTTGGATGAGATCTCGACGAAGCTGGCATCCTAACG
CATCCGGGGGATATTTCGCCCCCGCTGTCACCCAACATCGCCCATTTCTA
AGCACGGTGATGCAATACGTACAGTTTGCTCCGTACGCGCTACGCACGTC
TACTGCAACCCAATCGTTCTCAACAGACACCAGCTGGTGTACATACGAAA
GTTCCACGACAAACTCTCAGAAGAAGCAGTGGGTTTGA
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