prot_Ecto-sp13_S_contig13258.2623.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig13258.2623.1
Unique Nameprot_Ecto-sp13_S_contig13258.2623.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length89
Homology
BLAST of mRNA_Ecto-sp13_S_contig13258.2623.1 vs. uniprot
Match: D7G9G6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9G6_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 5.010e-23
Identity = 61/89 (68.54%), Postives = 67/89 (75.28%), Query Frame = 0
Query:    2 MAAVFITT-SQQRGRHLSLGLFLTLAKNHLLRLAVVVLMTMVLLTTSAVADTPAREDAPDDGVTHIHGCSDLLNDRTPVHGYVRIVGDV 89
            MA  F+ T SQ R  H S GLF +LAKNHLLRLAVVVLMTMVLLT SAVA+      A  DGVT+IHGCSDL+NDRTPVHG V IV D+
Sbjct:    1 MATAFMNTYSQSRCSHRSSGLFFSLAKNHLLRLAVVVLMTMVLLTASAVAEL-----AQVDGVTYIHGCSDLVNDRTPVHGNVCIVEDL 84          
BLAST of mRNA_Ecto-sp13_S_contig13258.2623.1 vs. uniprot
Match: A0A6H5JI19_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI19_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 1.110e-13
Identity = 40/53 (75.47%), Postives = 42/53 (79.25%), Query Frame = 0
Query:    1 MMAAVFITTSQQRGRHLSLGLFLTLAKNHLLRLAVVVLMTMVLLTTSAVADTP 53
            M+A  F+TTSQ R R  S GLFL LAKNHLLRLAVVVLMTMVLLT S VAD P
Sbjct:    1 MVATAFMTTSQPRCRRRSSGLFLALAKNHLLRLAVVVLMTMVLLTASVVADPP 53          
BLAST of mRNA_Ecto-sp13_S_contig13258.2623.1 vs. uniprot
Match: D8LLQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ0_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 6.460e-7
Identity = 36/68 (52.94%), Postives = 46/68 (67.65%), Query Frame = 0
Query:   24 TLAKNHLLRLAVVVLMTMVLLTTSAVADTPARE--DAPDDGVTHIHGCSDLLNDRTPVHGYVRIVGDV 89
            T+AKN LLRL VV    +V+L TSA ADTPA++  +   +G T+I+ C DL  DRT V G V IVGD+
Sbjct:   19 TVAKN-LLRLLVV----LVVLITSAAADTPAQDGGEPTAEGATYIYSCDDLAMDRTLVRGSVAIVGDI 81          
BLAST of mRNA_Ecto-sp13_S_contig13258.2623.1 vs. uniprot
Match: A0A6H5L380_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L380_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 4.290e-6
Identity = 38/82 (46.34%), Postives = 53/82 (64.63%), Query Frame = 0
Query:   10 SQQRGRHLSLGLFLTLAKNHLLRLAVVVLMTMVLLTTSAVADTPARE--DAPDDGVTHIHGCSDLLNDRTPVHGYVRIVGDV 89
            S +RG H   GL +T+AKN LLRL VV    +V+L TSA ADTP ++  +   +  T+IH C DL+ DRT V G V ++G++
Sbjct:    8 SPRRGCHPP-GL-VTVAKN-LLRLLVV----LVVLITSAAADTPGQDGGEPTAEVATYIHSCDDLVMDRTVVRGSVALMGNI 82          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13258.2623.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G9G6_ECTSI5.010e-2368.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JI19_9PHAE1.110e-1375.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLQ0_ECTSI6.460e-752.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L380_9PHAE4.290e-646.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..29
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 51..89
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 30..50
NoneNo IPR availableTMHMMTMhelixcoord: 28..50

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13258contigEcto-sp13_S_contig13258:3839..4105 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13258.2623.1mRNA_Ecto-sp13_S_contig13258.2623.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig13258 3689..4105 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig13258.2623.1 ID=prot_Ecto-sp13_S_contig13258.2623.1|Name=mRNA_Ecto-sp13_S_contig13258.2623.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=89bp
MMAAVFITTSQQRGRHLSLGLFLTLAKNHLLRLAVVVLMTMVLLTTSAVA
DTPAREDAPDDGVTHIHGCSDLLNDRTPVHGYVRIVGDV
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