mRNA_Ecto-sp13_S_contig10234.261.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10234.261.1
Unique NamemRNA_Ecto-sp13_S_contig10234.261.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10234.261.1 vs. uniprot
Match: A0A6H5JVW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVW6_9PHAE)

HSP 1 Score: 612 bits (1578), Expect = 7.710e-214
Identity = 320/360 (88.89%), Postives = 328/360 (91.11%), Query Frame = 1 
Query:    1 RDVLMVTVLDRSPPPSSAAPDGRTRPAYVAEAKPLRCTHWGSGGRPTRRTCVVAPPEQAQELASDCSAVGRDDGDPRGRGGANSGFGSEVLRRGGESTVQLAIYWSPAIRLKRPLSLVARAGRLTARVVSRKIDRPAAAVLNLGLGGVEKASDFFLFGDPRLRAAALVASAVSLSLGSAVVAXXXXXXXPVVLAXXXXXXATFATLAPPALALTWVFACTGPACEQLWRPLLVWTGTRWGSFRRLLLLPLEIEAESWGEGGDGGDQGVLLTGPETFAMGEEAARRWLPPPSAADGRQAEEQPNAIIPVGGEGSQDRGGGVRNGGNAADAGAVVLLLACYQNLIGVLHTGLEASRWRPRPR 1080
            RDVLMVTVLDRS PPSSAAPDGRTRP YVAEAKPLRCTHWGSGGRPTRRTCVVAPPE+AQELAS  SAV RD GDPRGRGGA SG GSEVLRRGGESTVQLAI WSPAIRLKRPLSLVARAGRLTARVVSRKIDRPAAAVLNLGLGG EKASDFFLFGDPRL+AAALVA AVS+SLGSAVV        PV+LA      ATFATL PPALALTWVFACTGPACEQLWRPLLVWTGTRWG FRRLLLLPLEIEAES GEGGDGGD+GVLL G ET AMGEE ARRWLPPPSAADGRQAEE+PNAIIPVGGEGSQ+RGGGVRNGGNAADAGAVVLLLACYQNLIGVLH+GLEASRWRPRPR
Sbjct:   74 RDVLMVTVLDRSSPPSSAAPDGRTRPLYVAEAKPLRCTHWGSGGRPTRRTCVVAPPEEAQELASGGSAVDRDGGDPRGRGGATSGVGSEVLRRGGESTVQLAICWSPAIRLKRPLSLVARAGRLTARVVSRKIDRPAAAVLNLGLGGAEKASDFFLFGDPRLKAAALVAFAVSMSLGSAVVVAAAACFLPVMLALSAAAAATFATLGPPALALTWVFACTGPACEQLWRPLLVWTGTRWGLFRRLLLLPLEIEAESLGEGGDGGDRGVLLKGLETSAMGEETARRWLPPPSAADGRQAEEKPNAIIPVGGEGSQERGGGVRNGGNAADAGAVVLLLACYQNLIGVLHSGLEASRWRPRPR 433
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BLAST of mRNA_Ecto-sp13_S_contig10234.261.1 vs. uniprot
Match: D7FN99_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN99_ECTSI)

HSP 1 Score: 327 bits (838), Expect = 9.930e-104
Identity = 175/208 (84.13%), Postives = 180/208 (86.54%), Query Frame = 1 
Query:   73 RPAYVAEAKPLRCTHWGSGGRPTRRTCVVAPPEQAQELASDCSAVGRDDGDPRGRGGANSGFGSEVLRRGGESTVQLAIYWSPAIRLKRPLSLVARAGRLTARVVSRKIDRPAAAVLNLGLGGVEKASDFFLFGDPRLRAAALVASAVSLSLGSAVVAXXXXXXXPVVLAXXXXXXATFATLAPPALALTWVFACTGPACEQLWRPLL 696
            RP YVAEAKPLRCTHWGSGGRPTRRTCVVAP E+ QELAS  SAVGR+  DPRGRGGANSG  SEV+RRGGESTVQLAI WSPAIRLKRPLSLVARAGRLTA VVSRKIDRPAAAVLNLGLGG EKASDF  FGDPRL+AAALVASAVSLSLGSAVV        PV+LA      ATFATLAPPALALTWVFACTGPACEQLWRPLL
Sbjct:   71 RPPYVAEAKPLRCTHWGSGGRPTRRTCVVAPLEEVQELASGASAVGRNGVDPRGRGGANSGGWSEVVRRGGESTVQLAICWSPAIRLKRPLSLVARAGRLTAHVVSRKIDRPAAAVLNLGLGGAEKASDFLFFGDPRLKAAALVASAVSLSLGSAVVVAAAACFLPVMLALSAAAAATFATLAPPALALTWVFACTGPACEQLWRPLL 278
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10234.261.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JVW6_9PHAE7.710e-21488.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FN99_ECTSI9.930e-10484.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10234contigEcto-sp13_S_contig10234:152..4143 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1922
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-15_003510.1
Cds size1071
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10234.261.1prot_Ecto-sp13_S_contig10234.261.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10234 164..3304 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462517.866699-UTR-Ecto-sp13_S_contig10234:151..1631681462517.866699-UTR-Ecto-sp13_S_contig10234:151..163Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10234 152..163 +
1681462517.9117372-UTR-Ecto-sp13_S_contig10234:3304..41431681462517.9117372-UTR-Ecto-sp13_S_contig10234:3304..4143Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10234 3305..4143 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462517.875364-CDS-Ecto-sp13_S_contig10234:163..5471681462517.875364-CDS-Ecto-sp13_S_contig10234:163..547Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10234 164..547 +
1681462517.8836977-CDS-Ecto-sp13_S_contig10234:1100..14001681462517.8836977-CDS-Ecto-sp13_S_contig10234:1100..1400Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10234 1101..1400 +
1681462517.8947253-CDS-Ecto-sp13_S_contig10234:2431..25991681462517.8947253-CDS-Ecto-sp13_S_contig10234:2431..2599Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10234 2432..2599 +
1681462517.9034002-CDS-Ecto-sp13_S_contig10234:3085..33041681462517.9034002-CDS-Ecto-sp13_S_contig10234:3085..3304Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10234 3086..3304 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10234.261.1

>prot_Ecto-sp13_S_contig10234.261.1 ID=prot_Ecto-sp13_S_contig10234.261.1|Name=mRNA_Ecto-sp13_S_contig10234.261.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=357bp
MVTVLDRSPPPSSAAPDGRTRPAYVAEAKPLRCTHWGSGGRPTRRTCVVA
PPEQAQELASDCSAVGRDDGDPRGRGGANSGFGSEVLRRGGESTVQLAIY
WSPAIRLKRPLSLVARAGRLTARVVSRKIDRPAAAVLNLGLGGVEKASDF
FLFGDPRLRAAALVASAVSLSLGSAVVAAAAAFFLPVVLALSAAAAATFA
TLAPPALALTWVFACTGPACEQLWRPLLVWTGTRWGSFRRLLLLPLEIEA
ESWGEGGDGGDQGVLLTGPETFAMGEEAARRWLPPPSAADGRQAEEQPNA
IIPVGGEGSQDRGGGVRNGGNAADAGAVVLLLACYQNLIGVLHTGLEASR
WRPRPR*
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mRNA from alignment at Ecto-sp13_S_contig10234:152..4143+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10234.261.1 ID=mRNA_Ecto-sp13_S_contig10234.261.1|Name=mRNA_Ecto-sp13_S_contig10234.261.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3992bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10234:152..4143+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGACGTACTGATGGTCACGGTGCTGGATAGATCCCCTCCGCCCTCTTC
CGCGGCACCGGACGGCCGAACGAGACCAGCCTACGTAGCCGAGGCCAAGC
CGCTCCGGTGCACGCACTGGGGCTCGGGGGGGCGCCCAACCCGCCGCACT
TGCGTCGTGGCACCCCCGGAGCAAGCCCAAGAACTGGCTTCGGATTGTTC
GGCCGTCGGCCGGGACGATGGTGATCCCCGCGGGCGGGGCGGGGCAAACA
GCGGGTTCGGGAGTGAGGTCCTTCGCCGGGGGGGGGAGTCGACGGTCCAG
CTGGCGATCTACTGGTCGCCCGCGATTCGGCTCAAGCGGCCGCTGTCCCT
TGTGGCGCGGGCGGGGAGGCTGACGGCGCGTGTGGTTTCTCGGAAGGTTG
GCGGGGTGATTGGCCTTAGCGAGAGCGGTCCTTGACGGCGATGATTGTGC
GGAAAATATGCTCGTTTGGTGTTGTTGGTATGTTTGGGTGTCGTAGCACA
AGAGGTCTAAAGCTTCAACAGCCCGTCTGCGATAGTGCCGGACGGAAGCG
CTGGCACGATGTAGTCAGGGCCGGGTCTCTTCAAAGCCAAGGATGGAGCT
AGTTGGGGTGGAAACAGACCAAGCAAAAGAGGAAATTTCCCCATCAAAAT
CTTCCGCGACATTAGCTCGAAAAGCCCATAACCATCCTTGTCCGGTTGCG
AGGTGCAGGAGATTCTGGTGCGATTCACCCACGTCACGGTGTCCTCATTG
ATCACACTAGTTTAAGTTCCTACTGCATGTGGTTCTTGTACCCGTGTGTT
GCTGTTTTTTTCGCACGGCCCACCGCTTCGAACAAGCACCCCGATAGTCC
GGAAGGTTTGTCCGCGCAACCCCTCTCGCCTTGTTTCCATGACGAACCTC
ATGCGTTCATGCCACCCAATCCTTCCACCCCGTCCTCTCGTCCGCGCAGA
TCGACAGGCCGGCGGCGGCGGTGCTGAACCTCGGGTTGGGCGGGGTGGAG
AAGGCCTCCGACTTTTTCCTCTTTGGAGACCCCCGGCTGAGAGCGGCCGC
CCTAGTCGCGTCGGCGGTGTCCCTGTCCCTGGGGTCGGCGGTCGTCGCGG
CCGCAGCGGCGTTCTTCTTACCGGTCGTGCTGGCGCTGTCAGCGGCAGCT
GCGGCGACCTTCGCGACTCTCGCGCCGCCGGCATTGGCGTTGACCTGGGT
CTTCGCGTGCACGGGCCCCGCGTGCGAGCAGCTCTGGAGACCGCTGCTGG
TGAGAGCTCAAAGATTTTTTTTGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGTGGTGGGGGGGGCTTTTTGGTGTTCTTCTTTGTTAA
TGCCCTTTGGGGTCTCTTGCGTGGTTCGTCTCTTGAAGACTCATGTGCGG
AGGTCGAGCTGCTGCGATGCCGTCCTTTCTGCGACCTCATCGTGACAGTT
GCCGCGCAGTTTTCGTTGCTCGTGGTCTGAGGGCTTGTGGGTATTCAGTA
AAAGCCTTGAGCGGCAAACACAGCCTTGTTTTGCGACGCTGCTGCCACCG
GTGTTGGGGTGCAGCTGCTGATGGGCGTGAGAAAAAGGCCGATCGCAAGG
GAGTAGAGGGGAGCCACCCGACATGTGTTTTCGCTTGCTTCATTTTGCGC
GATGCCTGTCTCTGGTGTGTGCGACCTGCGCGTGTGCACATGTTGTCCAT
CACCGTATCGGAGCACGTCTAGATGTCCCCAGAAGGTCTTGACGGTTCCC
TTCTTTCTCACGGAGCGAGCTCCTCGTACATGTCTGGTTTGGTCGGTTTT
CGAGATCTTCTTCAAGGCGAAAATATCGTCGGTGGACAGCGCTTGTGCTG
TCGCGTCAGCCTAATCCCGCACGCCATGCATGCGCACTTCTCCGTAAGCA
GAGGGCTCTTTCTTTTCTGTCTCTCCATCCCGCTGTTGGTCTTTGGGCTA
TTTTGAAGTGGTAGACCATTGGTAGCGCCCTTTACCCGATGCGGCAGAGT
GTGTGTTCGAAGTCTTCTTGGGAGTGAATCATGCGTAATTCTACACCGAA
AGGCGGCAGAAATTCGCGCGTGTCCACGATTAAGAAGGAAAGAGATAGTT
CACCCTTCTCGCGTTAAGAAGCGAACGCAGGAACCGCAGGGAGGAGTAAG
GTAGGACAAAAGCGCGAACGTCCGTGTGTTAACTTCCTCCAGTGTGACCC
CGCTGGCTGATGTGTCAAACATACACGGAATTGCGTGGACCGGCGCCAGA
GAACAGACAAATAATACCTGATCCTGACAGGTATGGACCGGAACACGGTG
GGGTTCGTTTCGGAGATTGTTACTGCTGCCTTTGGAAATCGAGGCGGAAA
GCTGGGGGGAAGGTGGGGACGGTGGCGACCAGGGCGTTTTGTTGACGGGA
CCGGAAACGTTTGCCATGGGGGAGGAAGCTGCGCGGAGATGGTTGCCGGT
GAGATGCTATAGGACTCAACTTTGTTTTTGCTTCCAGGATGTTTTGTATC
GGGAAATTTGTCGTGTTTGTTTGGACGTGTTTGTTTGGATGAGGCTTATG
GGACAGGCTGTCGGAAAACGACGGGAAAAAGGAACAGAAGAAGGTGTATT
AAGGAAACAGGGGCAGTGCGTGATTAGACGTATTACCTTGATTTTGAAGC
TCAGAGTCACGGTGCTTTTTTCCGTTTCGTCTTCGCGCACCAGTATGTTT
GACGCCGACAGGCAACTCTAGAGTTACACGTCGTGTTGCCCCGGCCCAAT
TGCGTGACTTAAGCGTAAAAACCAGAGAAGAAGCACCCCTACGACGACCG
TCGAAGGGAATTTAATGTTCGTAGTGAACGCTAGAAGGCCAGAATACGGA
AGGACCGGCTCTAAATCAAGGTGTTGAGTCCCAGCCACAACCCAGCAACA
GAGGCGTCCATCCCCGGCCCCCTTGCACTCCCAGCCCCCCTCGGCAGCGG
ACGGACGGCAGGCCGAAGAGCAACCGAACGCCATTATTCCCGTTGGCGGT
GAGGGCAGTCAAGACAGAGGCGGCGGCGTACGAAACGGCGGGAACGCAGC
CGACGCGGGGGCGGTAGTTCTTCTCCTGGCATGCTACCAAAACCTGATCG
GGGTGCTGCACACCGGGCTGGAGGCGTCACGCTGGCGCCCTCGTCCGCGA
TGAAAAGGGAATTGACGCTGCCGAGGCAATCGCCGTGATGTGGAAGTCTG
GGGGTACTTGTATATGGATAAGGCTCACGCAACCTGCATCGGTATGGTGT
TGTGGTGACGGTGACAGGGCTCTTTCCGATTGGCGTGTTTTGTTGTTTTG
TTCACCCCTGCAAACTTCCTTCTTTGTTCCACCTTTGATCCTGCGCTCGT
GCTTTGAGCTTGGTTAAAATTCGGGGCAAGTTTCTCACACCAACTATTTT
GTTAGTGAGGTCTACGAAAAGCAGCGTGTGATCGATTGGGCTTTACCTGG
TCATGTCGTACACATGCTATTGTTTTCTCCGAGTCGAAGGCCTGACTGTC
ACTCGTCTTGTCCGTCGGACAGTGTAGATTTTTCTGTGCAAGTGAATGCG
TGCATGCGTGTGGCTACGCATCAACCGAAGTTTTTGTGTGCAGACTGGGT
TTTGCGTCGTGTTCCATCGGGGCGTACGCCCGGTAGTTTTGGGATACGTT
TCGGTGCCCCGAAGAACGCATTGGCCTTTGTCGGGCACTCTCTTAACTCT
TCGCCCCTCCTGCCTCTTGTCATGCGCACCCAGTAGAAGCTATAAATGGT
CGTGTACGTAGTCACCGACGCAAGTGCAGGCATACCCGGCATACGCCGGC
TCTATTGAGATCCGGACGTGTTGTCCCATAAGCTGCAGCCAGAGTTTTTC
AACTCAACACTTACGCATGATATTCTCGAGTATTTTCGCCAACAGTTCCT
ACGCGGCACTGTTGGTTCAGCCATCTCTCGCCGCAGTGCTGTACCGATAC
AAAAATAATCACGAGATGAGGAAAACGTTTCACCGACCACGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10234:152..4143+

>mRNA_Ecto-sp13_S_contig10234.261.1 ID=mRNA_Ecto-sp13_S_contig10234.261.1|Name=mRNA_Ecto-sp13_S_contig10234.261.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1071bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10234:152..4143+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCACGGTGCTGGATAGATCCCCTCCGCCCTCTTCCGCGGCACCGGA
CGGCCGAACGAGACCAGCCTACGTAGCCGAGGCCAAGCCGCTCCGGTGCA
CGCACTGGGGCTCGGGGGGGCGCCCAACCCGCCGCACTTGCGTCGTGGCA
CCCCCGGAGCAAGCCCAAGAACTGGCTTCGGATTGTTCGGCCGTCGGCCG
GGACGATGGTGATCCCCGCGGGCGGGGCGGGGCAAACAGCGGGTTCGGGA
GTGAGGTCCTTCGCCGGGGGGGGGAGTCGACGGTCCAGCTGGCGATCTAC
TGGTCGCCCGCGATTCGGCTCAAGCGGCCGCTGTCCCTTGTGGCGCGGGC
GGGGAGGCTGACGGCGCGTGTGGTTTCTCGGAAGATCGACAGGCCGGCGG
CGGCGGTGCTGAACCTCGGGTTGGGCGGGGTGGAGAAGGCCTCCGACTTT
TTCCTCTTTGGAGACCCCCGGCTGAGAGCGGCCGCCCTAGTCGCGTCGGC
GGTGTCCCTGTCCCTGGGGTCGGCGGTCGTCGCGGCCGCAGCGGCGTTCT
TCTTACCGGTCGTGCTGGCGCTGTCAGCGGCAGCTGCGGCGACCTTCGCG
ACTCTCGCGCCGCCGGCATTGGCGTTGACCTGGGTCTTCGCGTGCACGGG
CCCCGCGTGCGAGCAGCTCTGGAGACCGCTGCTGGTATGGACCGGAACAC
GGTGGGGTTCGTTTCGGAGATTGTTACTGCTGCCTTTGGAAATCGAGGCG
GAAAGCTGGGGGGAAGGTGGGGACGGTGGCGACCAGGGCGTTTTGTTGAC
GGGACCGGAAACGTTTGCCATGGGGGAGGAAGCTGCGCGGAGATGGTTGC
CGCCCCCCTCGGCAGCGGACGGACGGCAGGCCGAAGAGCAACCGAACGCC
ATTATTCCCGTTGGCGGTGAGGGCAGTCAAGACAGAGGCGGCGGCGTACG
AAACGGCGGGAACGCAGCCGACGCGGGGGCGGTAGTTCTTCTCCTGGCAT
GCTACCAAAACCTGATCGGGGTGCTGCACACCGGGCTGGAGGCGTCACGC
TGGCGCCCTCGTCCGCGATGA
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