mRNA_Ecto-sp13_S_contig10233.260.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10233.260.1
Unique NamemRNA_Ecto-sp13_S_contig10233.260.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig10233.260.1 vs. uniprot
Match: D8LTK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTK2_ECTSI)

HSP 1 Score: 816 bits (2108), Expect = 8.920e-294
Identity = 480/550 (87.27%), Postives = 488/550 (88.73%), Query Frame = 1
Query:    1 RPPPLTPRRYGPKRGASAAAVSPVVSTTPGSPVAVAARVTSQEESVRSTLRMKRAAEAIALEDARILAQAKRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARARQAEKMRVRALRALVAREEAEIDRDRALELTLEVLRRKHADKRRGVSTIPSAPGSKRAHSPPRKSRRPDDHRTNLARRVKDSAASRSCGLSQAQVLLLRRSRKLGREGDAPRTVSERRTEQLAQPKEHRPATRARNPATEALVEELTRTMTDTEKRAFLHACLADAKECTHRPYTRSAAXXXXXXXXXXXXXXXXXXEEAKDGSGPGTSIDAFLYRMDAQERAKNAAMEHRRGELAYKAVLDKRVCPGCGAEQSYDEVEEKRKICXNCEAEYRKPKTWASVRKDFLNRVEAFQESKREAFQAAMQGTMRTYALGSRRSCDGAERERLFWEDIEDDFVFR*LQEDAARRQASLESRSAALYQDWTFRPTLSAASERVVDESAWAGSFSELLYTFRLSPALHAGQLDSGVRVKVCADVSLHLAATRTHFLASRTFWSAGM 1650
            RPP LTPRRYGPKRG SAAA SPV+ TTPGSPVAVAARV SQEESVRSTLRMKRAAEAIALEDARILA+ K Q XXXXXXXXXXXXXXXXXXXXXXX            ARAR+AEKMRVRALRAL AREEAEIDRDRALELTLEVLRRKHADKRRGVSTIPSAP  KRAHSPPRKS+RPDDHRT LARRVKDSAA RSCGLSQAQVLLLRRSRKLGREGDAPRTVSERRTEQLAQPKEHRPATR RN ATEALVEELT+TMTD EKRAFLHACLADAKECTHRPYTRSAA                  EEAKDGSGPG SIDAFLYRM AQERAKNAAMEHRRGELAYKAVLDKRVCPGCGAEQSYDEVEEKRKICXNCEAEYRKPKTWASVRKDFLNRVEAFQESKREA QAA Q  MRT+ALGS RS DGAERERLFWEDIEDDFV+R LQEDAARRQ SLESRSAALYQDWTFRPTLSAASERVVDESAWAGSFSELLYTFRLSPAL AGQLDSGV V  CADVSLHLAATRTH LA RTFWSAG+
Sbjct:   17 RPPALTPRRYGPKRGVSAAAASPVLPTTPGSPVAVAARVISQEESVRSTLRMKRAAEAIALEDARILAEVKHQEXXXXXXXXXXXXXXXXXXXXXXXHGDDPAKEED--ARARKAEKMRVRALRALAAREEAEIDRDRALELTLEVLRRKHADKRRGVSTIPSAPAYKRAHSPPRKSKRPDDHRTTLARRVKDSAA-RSCGLSQAQVLLLRRSRKLGREGDAPRTVSERRTEQLAQPKEHRPATRTRNSATEALVEELTKTMTDKEKRAFLHACLADAKECTHRPYTRSAAAAARHRKGGAGDGATGGGEEAKDGSGPGASIDAFLYRMGAQERAKNAAMEHRRGELAYKAVLDKRVCPGCGAEQSYDEVEEKRKICXNCEAEYRKPKTWASVRKDFLNRVEAFQESKREAVQAATQSRMRTFALGSHRSYDGAERERLFWEDIEDDFVYR-LQEDAARRQESLESRSAALYQDWTFRPTLSAASERVVDESAWAGSFSELLYTFRLSPALRAGQLDSGVHVNFCADVSLHLAATRTHLLACRTFWSAGV 562          
BLAST of mRNA_Ecto-sp13_S_contig10233.260.1 vs. uniprot
Match: A0A6H5JHI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI1_9PHAE)

HSP 1 Score: 705 bits (1820), Expect = 1.720e-249
Identity = 453/607 (74.63%), Postives = 468/607 (77.10%), Query Frame = 1
Query:    4 PPPLTPRRYGPKRGASAAAVSPVVSTTPGSPVAVAARVTSQEESVRSTLRMKRAAEAIALEDARILAQAKRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARAR--------------------QAEKMRVRALRALVAREEAEIDRDRALELTLEVLRRKHADKRRGVSTIPSAPGSKRAHSPPRKSRRPDDHRTNLARRVKDSAASRSCGLSQAQVLLLRRSRKLGREGDAPRTVSERRTEQLAQPKEHRPATR-------------------------------------------ARNPATEALVEELTRTMTDTEKRAFLHACLADAKECTHRPYTRSAAXXXXXXXXXXXXXXXXXXEEAKDGSGPGTSIDAFLYRMDAQERAKNAAMEHRRGELAYKAVLDKRVCPGCGAEQSYDEVEEKRKICXNCEAEYRKPKTWASVRKDFLNRVEAFQESKREAFQAAMQGTMRTYALGSRRSCDGAERERLFWEDIEDDFVFR*LQEDAARRQASLESRSAALYQDWTFRPTLSAASERVVDESAWAGSFSELLYTFRLSPALHAGQLDSGVRVKVCADVSLHLAATRTHFLASRTF 1635
            PPP TPRRYGPKRGASAAAV+PV+ TTPGSP+AVAARV SQEESVRSTLRMKRAAEAIALEDARILA+ KRQ XXXXXXXXXXXXXXXXXX  XXXXXXXXXXXX   ARAR                    QAEKMRVRALR L AREEAEID+DRAL LTLEVLRRKHADKRRGVST+PS PG+KRAHSPPRKSRRPD+HRT LARRVKDSAA R CGLSQAQVLLLRRSRKLGREGDAPRTVSERRTEQLAQPKEHRPATR                                           +RNPAT+ALVEELT+TMTD EKRAFLHACLADAKECTHRPYTRSAA                  EEAKDGSGPG SIDAFLYRMDAQERAKNAAMEHRRGELAYKAVLDKRVCP CGAEQSYDEVEEKRKI X  EAEYRKPKTWASVRK                        +RT+ALGS RS DGAE ERLFWEDIEDDF  R LQ DAARRQASLESRSAALYQDWTFRPTLSAASERVVDESAWAGSFS+LLYTFRLSPALH GQLDSGV VKV AD+SLHLAATRTH LASRTF
Sbjct:   15 PPPPTPRRYGPKRGASAAAVAPVLPTTPGSPIAVAARVISQEESVRSTLRMKRAAEAIALEDARILAEVKRQEXXXXXXXXXXXXXXXXXXRTXXXXXXXXXXXXED-ARARGSLPSNPMSCCTLCPCMTKKQAEKMRVRALRVLAAREEAEIDQDRALALTLEVLRRKHADKRRGVSTLPSVPGNKRAHSPPRKSRRPDNHRTTLARRVKDSAA-RLCGLSQAQVLLLRRSRKLGREGDAPRTVSERRTEQLAQPKEHRPATRTRCGRVMTLVSSSNTSVAALAAREVQMKTRWYLVVRRQLASKVSRNPATDALVEELTKTMTDKEKRAFLHACLADAKECTHRPYTRSAAAVARHRRGGAGDGATGGGEEAKDGSGPGASIDAFLYRMDAQERAKNAAMEHRRGELAYKAVLDKRVCPDCGAEQSYDEVEEKRKIXXXXEAEYRKPKTWASVRK------------------------IRTFALGSHRSYDGAEGERLFWEDIEDDFFCR-LQHDAARRQASLESRSAALYQDWTFRPTLSAASERVVDESAWAGSFSKLLYTFRLSPALHPGQLDSGVHVKVGADLSLHLAATRTHLLASRTF 594          
BLAST of mRNA_Ecto-sp13_S_contig10233.260.1 vs. uniprot
Match: A0A482S3J2_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S3J2_9ARCH)

HSP 1 Score: 117 bits (292), Expect = 3.290e-24
Identity = 76/225 (33.78%), Postives = 116/225 (51.56%), Query Frame = 1
Query:  802 RAFLHACLADAKECTHRPYTRSAAXXXXXXXXXXXXXXXXXXEEAKDGSGPGTSIDAFLYRMDAQERAKNAAMEHRRGELAYKAVLDKRVCPGCGAEQSYDEVEEKRKICXNCEAEYRKPKTWASVRKDFLNRVEAFQESKREAF--QAAMQGTMRTYALGSRRSCDG--------AERERLFWEDIEDDFVFR*LQEDAARRQASLESRSAALYQD-WTFRPTL 1443
            R   +  L +A+ECT RP+ RSA                   E+ +D         +F+ R +A+ER +   ++ + G+  Y A++DK+VCP CGA+QSYDEV+EKRK+C NC  EY  P TWA VR  F  + + F  SKR A   QA M+   R Y    +++ D           R  +  E+ E +F FR ++E    + A L+     LY++ ++F+PT+
Sbjct:  259 RTLRYLTLEEAQECTFRPHLRSAQKKNNR-------------EQREDDGAKEDPRFSFISRQEAEERNRREELQFKMGKKDYDALVDKKVCPQCGAKQSYDEVKEKRKLCVNCRVEYTNPMTWAKVRNKFWKKCQEF--SKRVALHKQAIMEEIEREYKFIIKKAVDEQGKVVEVMVPRSHILTEEEEQEF-FRRIEEKLLEKDAKLKRLDRELYEEKYSFKPTV 467          
BLAST of mRNA_Ecto-sp13_S_contig10233.260.1 vs. uniprot
Match: G4ZM67_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZM67_PHYSP)

HSP 1 Score: 102 bits (255), Expect = 1.980e-19
Identity = 60/164 (36.59%), Postives = 93/164 (56.71%), Query Frame = 1
Query:  973 FLYRMDAQERAKNAAMEHRRGELAYKAVLDKRVCPGCGAEQSYDEVEEKRKICXNCEAEYRKPKTWASVRKDFLNRVEAFQESKREAFQAAMQGTMRTYALGSRRSCDGAERERLFWEDIEDDFVFR*LQEDAARRQASLESRSAALYQDWTFRPTLSAASERV 1464
            F+ RM+A ERA+   +   R E AY A +DK+ CP CG  QSY E+ +KRK CXNC   Y+    W+ V K+FL R+E FQ+S +E  +   + + R  AL  R   D  E  +  WED+ D+F+ R LQ D   R+ S       + ++ +F P+++  ++++
Sbjct:  340 FVRRMEAAERARREQLRRTREEAAYLARVDKKECPSCGNPQSYSELTQKRKKCXNCGVTYKSRIAWSDVAKEFLTRMEEFQQSCKERQRERQEESERQEALSCRPE-DDEEDAKKTWEDVRDEFLGR-LQLDLEYREMSRAVIWEEIQRECSFSPSITRRAQQL 501          
BLAST of mRNA_Ecto-sp13_S_contig10233.260.1 vs. uniprot
Match: D0NU37_PHYIT (Cleavage induced predicted protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NU37_PHYIT)

HSP 1 Score: 100 bits (248), Expect = 1.320e-18
Identity = 59/164 (35.98%), Postives = 91/164 (55.49%), Query Frame = 1
Query:  973 FLYRMDAQERAKNAAMEHRRGELAYKAVLDKRVCPGCGAEQSYDEVEEKRKICXNCEAEYRKPKTWASVRKDFLNRVEAFQESKREAFQAAMQGTMRTYALGSRRSCDGAERERLFWEDIEDDFVFR*LQEDAARRQASLESRSAALYQDWTFRPTLSAASERV 1464
            F+ RM+A ERA+   +   R E AY A +DK+ CP CG  QSY E+ +KRK CXNC   Y+    W+ V KDFL R+E FQ+ +++  Q   Q       L   +  D  E  R  W+DI D+F+ R LQ D   R+ S  +    + ++ +F P+++  ++++
Sbjct:  313 FVRRMEASERARREQLRRTREEAAYLARVDKKECPSCGNPQSYSELTQKRKKCXNCGVTYKSRIAWSDVAKDFLTRMEEFQQQRKDR-QLEKQEEYERQELQYCKPEDDNEDTRKTWQDIRDEFLGR-LQLDLEYREMSRAAIWEEIQRECSFSPSITRRAQQL 474          
BLAST of mRNA_Ecto-sp13_S_contig10233.260.1 vs. uniprot
Match: W2PTR4_PHYPN (Uncharacterized protein n=11 Tax=Phytophthora TaxID=4783 RepID=W2PTR4_PHYPN)

HSP 1 Score: 98.2 bits (243), Expect = 5.840e-18
Identity = 57/164 (34.76%), Postives = 90/164 (54.88%), Query Frame = 1
Query:  973 FLYRMDAQERAKNAAMEHRRGELAYKAVLDKRVCPGCGAEQSYDEVEEKRKICXNCEAEYRKPKTWASVRKDFLNRVEAFQESKREAFQAAMQGTMRTYALGSRRSCDGAERERLFWEDIEDDFVFR*LQEDAARRQASLESRSAALYQDWTFRPTLSAASERV 1464
            F+ RM+A ERA+   +   R E AY   +DK+ CP CG  QSY E+ +KRK C NC   Y+    W+ V KDFL R+E FQ+  ++  Q   Q       L + +  D +E  +  WEDI D+F+ R LQ D   R+ S  +    + ++ +F P+++  ++++
Sbjct:  327 FIRRMEAAERARREQLRRTREEAAYLDRVDKKECPSCGNPQSYSELTQKRKKCPNCGVTYKSRIAWSDVAKDFLTRMEEFQQQCKDR-QREKQEEFERQELQNCKLEDDSEDTKKTWEDIRDEFLGR-LQLDLEYREMSRAAIWEEIQRECSFSPSITRRAQQL 488          
BLAST of mRNA_Ecto-sp13_S_contig10233.260.1 vs. uniprot
Match: A0A6A3SPW1_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3SPW1_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 1.090e-17
Identity = 59/166 (35.54%), Postives = 93/166 (56.02%), Query Frame = 1
Query:  973 FLYRMDAQERAKNAAMEHRRGELAYKAVLDKRVCPGCGAEQSYDEVEEKRKICXNCEAEYRKPKTWASVRKDFLNRVEAFQESKREAFQAAMQGTMRTYALGSRRSCDGAERE--RLFWEDIEDDFVFR*LQEDAARRQASLESRSAALYQDWTFRPTLSAASERV 1464
            F+ RM+A ERA+   +   R E AY A +DK+ CP CG  QSY E+ +KRK CXNC   Y+    W+ V K+FL R+E FQ+S  E  +   Q + R  AL     C   + E  +  WE++ D+F+ R LQ D   R+ S  +    + ++ +F P+++  ++++
Sbjct:  342 FVRRMEAAERARREQLRRTREEAAYLARVDKKECPSCGNPQSYSELTQKRKKCXNCGVTYKSRIAWSDVAKEFLTRMEEFQQSCNERQREREQESERREAL----CCKPEDNEDTKKTWEEVRDEFLGR-LQLDLEYREMSRAAIWEQIQRECSFSPSITRRAQQL 502          
BLAST of mRNA_Ecto-sp13_S_contig10233.260.1 vs. uniprot
Match: A0A8J5J0J6_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5J0J6_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 3.170e-16
Identity = 56/166 (33.73%), Postives = 89/166 (53.61%), Query Frame = 1
Query:  973 FLYRMDAQERAKNAAMEHRRGELAYKAVLDKRVCPGCGAEQSYDEVEEKRKICXNCEAEYRKPKTWASVRKDFLNRVEAFQESKREAFQAAMQGTMRTYALGSRRSCDGAERERLFWEDIEDDFVFR*LQEDAARRQASLESRSAALYQDWTFRPTLSAASERVVD 1470
            F+ RM+A ERA+   +   R E  Y A +DK+ CP CG  QSY E+ +KRK  XNC   Y+    W+ V +DFL R+E FQ+  +E  +   +   R   L  +   D  + ++  W DI D+F+ R LQ D   R+ S  +    + ++ +F P+++  ++ V D
Sbjct:  325 FVRRMEAAERARREQLRRTREEAVYLARVDKKECPSCGNPQSYSELTQKRKKXXNCGVTYKSRIAWSDVARDFLTRMEEFQQQCKEKQREKREEYERQELLACKPENDNEDTKKT-WVDIRDEFLGR-LQLDLEYREMSRAAIWEEIQRECSFSPSITRRAQEVCD 488          
BLAST of mRNA_Ecto-sp13_S_contig10233.260.1 vs. uniprot
Match: A0A329SVK4_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SVK4_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 3.050e-15
Identity = 54/164 (32.93%), Postives = 88/164 (53.66%), Query Frame = 1
Query:  973 FLYRMDAQERAKNAAMEHRRGELAYKAVLDKRVCPGCGAEQSYDEVEEKRKICXNCEAEYRKPKTWASVRKDFLNRVEAFQESKREAFQAAMQGTMRTYALGSRRSCDGAERERLFWEDIEDDFVFR*LQEDAARRQASLESRSAALYQDWTFRPTLSAASERV 1464
            F+ RM+A ERA+   +   R E  Y A +DK+ CP CG  QSY E+ +KRK  XNC   Y+    W+ V +DFL R+E FQ+  +E  +   +   R   L  +   D  + ++  W DI D+F+ R LQ D   R+ S  +    + ++ +F P+++  ++ +
Sbjct:  323 FVRRMEAAERARREQLRRTREEAVYLARVDKKECPSCGNPQSYSELTQKRKKXXNCGVTYKSRIAWSDVARDFLTRMEEFQQQCKEKQREKREEYERQELLTCKPEDDNEDTKKT-WVDIRDEFLGR-LQLDLEYREMSRAAIWEEIQRECSFSPSITRRAQEL 484          
BLAST of mRNA_Ecto-sp13_S_contig10233.260.1 vs. uniprot
Match: A0A225W4K5_9STRA (Cleavage induced protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W4K5_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 3.110e-15
Identity = 53/154 (34.42%), Postives = 83/154 (53.90%), Query Frame = 1
Query: 1003 AKNAAMEHRRGELAYKAVLDKRVCPGCGAEQSYDEVEEKRKICXNCEAEYRKPKTWASVRKDFLNRVEAFQESKREAFQAAMQGTMRTYALGSRRSCDGAERERLFWEDIEDDFVFR*LQEDAARRQASLESRSAALYQDWTFRPTLSAASERV 1464
            A+   +   R E AY   +DK+ CP CG  QSY E+ +KRK C NC   Y+    W+ V KDFL+R+E FQ+  +E  +   +   R  AL  R   D  E  +  WE++ D+F+ R LQ D   R+ S  +    + + +TF P++S  ++++
Sbjct:  339 ARREQLRRTREEAAYLDRVDKKECPSCGNPQSYSELTQKRKKCPNCGVTYKSRIAWSDVAKDFLDRMEEFQQHCKERQREQQEENERREALACRPEND--ENAKKTWEEVRDEFLGR-LQLDLEYREMSKAAMWDEIERAYTFSPSISRRAQQL 489          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10233.260.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D8LTK2_ECTSI8.920e-29487.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JHI1_9PHAE1.720e-24974.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A482S3J2_9ARCH3.290e-2433.78Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
G4ZM67_PHYSP1.980e-1936.59Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
D0NU37_PHYIT1.320e-1835.98Cleavage induced predicted protein n=2 Tax=Phytoph... [more]
W2PTR4_PHYPN5.840e-1834.76Uncharacterized protein n=11 Tax=Phytophthora TaxI... [more]
A0A6A3SPW1_9STRA1.090e-1735.54Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
A0A8J5J0J6_9STRA3.170e-1633.73Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
A0A329SVK4_9STRA3.050e-1532.93Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
A0A225W4K5_9STRA3.110e-1534.42Cleavage induced protein n=1 Tax=Phytophthora mega... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10233contigEcto-sp13_S_contig10233:1388..5870 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score583.2
Seed ortholog evalue9.4e-164
Seed eggNOG ortholog2880.D8LTK2
Model size1650
Hectar predicted targeting categoryother localisation
Exons11
EggNOG OGs2AZKF@1,2RZZN@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-28_003770.1
Cds size1203
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10233.260.1prot_Ecto-sp13_S_contig10233.260.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10233 1682..5717 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462517.6625364-UTR-Ecto-sp13_S_contig10233:1387..16811681462517.6625364-UTR-Ecto-sp13_S_contig10233:1387..1681Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10233 1388..1681 -
1681462517.8372543-UTR-Ecto-sp13_S_contig10233:5717..58701681462517.8372543-UTR-Ecto-sp13_S_contig10233:5717..5870Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10233 5718..5870 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462517.677155-CDS-Ecto-sp13_S_contig10233:1681..16821681462517.677155-CDS-Ecto-sp13_S_contig10233:1681..1682Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10233 1682..1682 -
1681462517.6870608-CDS-Ecto-sp13_S_contig10233:1870..19681681462517.6870608-CDS-Ecto-sp13_S_contig10233:1870..1968Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10233 1871..1968 -
1681462517.695792-CDS-Ecto-sp13_S_contig10233:2141..22131681462517.695792-CDS-Ecto-sp13_S_contig10233:2141..2213Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10233 2142..2213 -
1681462517.7053137-CDS-Ecto-sp13_S_contig10233:2610..26881681462517.7053137-CDS-Ecto-sp13_S_contig10233:2610..2688Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10233 2611..2688 -
1681462517.7180645-CDS-Ecto-sp13_S_contig10233:2976..30761681462517.7180645-CDS-Ecto-sp13_S_contig10233:2976..3076Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10233 2977..3076 -
1681462517.7468004-CDS-Ecto-sp13_S_contig10233:3333..36001681462517.7468004-CDS-Ecto-sp13_S_contig10233:3333..3600Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10233 3334..3600 -
1681462517.776133-CDS-Ecto-sp13_S_contig10233:3797..39471681462517.776133-CDS-Ecto-sp13_S_contig10233:3797..3947Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10233 3798..3947 -
1681462517.7892072-CDS-Ecto-sp13_S_contig10233:4229..43231681462517.7892072-CDS-Ecto-sp13_S_contig10233:4229..4323Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10233 4230..4323 -
1681462517.8068683-CDS-Ecto-sp13_S_contig10233:4887..50441681462517.8068683-CDS-Ecto-sp13_S_contig10233:4887..5044Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10233 4888..5044 -
1681462517.8204217-CDS-Ecto-sp13_S_contig10233:5288..54261681462517.8204217-CDS-Ecto-sp13_S_contig10233:5288..5426Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10233 5289..5426 -
1681462517.8285446-CDS-Ecto-sp13_S_contig10233:5669..57171681462517.8285446-CDS-Ecto-sp13_S_contig10233:5669..5717Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10233 5670..5717 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10233.260.1

>prot_Ecto-sp13_S_contig10233.260.1 ID=prot_Ecto-sp13_S_contig10233.260.1|Name=mRNA_Ecto-sp13_S_contig10233.260.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=401bp
MKRAAEAIALEDARILAQAKRQEEQRRRHSEHRVAASPPFPRPEDDHGDD
PAEEEDDDARARQAEKMRVRALRALVAREEAEIDRDRALELTLEVLRRKH
ADKRRGVSTIPSAPGSKRAHSPPRKSRRPDDHRTNLARRVKDSAASRSCG
LSQAQVLLLRRSRKLGREGDAPRTVSERRTEQLAQPKEHRPATRARNPAT
EALVEELTRTMTDTEKRAFLHACLADAKECTHRPYTRSAAAAARHRRGGA
GDGGTGGGEEAKDGSGPGTSIDAFLYRMDAQERAKNAAMEHRRGELAYKA
VLDKRVCPGCGAEQSYDEVEEKRKICPNCEAEYRKPKTWASVRKDFLNRV
EAFQESKREAFQAAMQGTMRTYALGSRRSCDGAERERLFWEDIEDDFVFR
*
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mRNA from alignment at Ecto-sp13_S_contig10233:1388..5870-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10233.260.1 ID=mRNA_Ecto-sp13_S_contig10233.260.1|Name=mRNA_Ecto-sp13_S_contig10233.260.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4483bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10233:1388..5870- (Ectocarpus species13 EcNAP12_S_4_19m)
AGACCGCCCCCGCTCACGCCGAGGAGATACGGACCGAAGCGGGGGGCGTC AGCGGCAGCTGTGTCTCCCGTGGTATCGACGACTCCCGGCAGCCCGGTGG CGGTTGCCGCCAGAGTGACCTCTCAGGAGGAGTCCGTCCGTTCCACTCTA AGGATGAAGAGAGCGGCAGAGGCGATAGCTCTCGAAGACGCCCGGATACT TGTGAGATGAAAACCGCTTCTCACAGAGCCTGTTCGTTAGTCGCTTCCTT TTACAAAGGACTATCGGTTGCCGGACGAATGATACGGGTGTAGAGACAAC GTTATGGTAGACCCTATCCTCCGGTCATATGCATGAAGACCCGCCCGTTC GAATCCACGTGTCGGTCACTGAGAGCAGTTCACGCCACGGAATAACACCA CGAAGTACATTCTTTGGGCGTCTGGCTCTATGCTTCGTCAACAGGCACAA GCGAAACGCCAAGAAGAGCAGCGAAGGCGCCACTCAGAGCACAGGGTGGC CGCATCGCCCCCCTTTCCAAGGCCTGAAGACGACCACGGCGACGACCCTG CCGAAGAAGAAGACGACGACGCCAGAGCCCGGGTGAGGCACATTGTAGCC ATACCTTCGGTGCACTGCAGGTTGTGAATGGGGTGCCATTTGACATTCAT TTCCTTGTGGGGAGCATGGAGGAGGTCGGTGAGCGAGGACAGCAGCTCCA AAACCTCACACGACAAGAGCCCGATCCGAGCAGGTTCATAGTGTTAGTGG ACAAAAACAAGGGAATGATCCCTTCCCTTAAACCCCGTGTTCTGTTGCAC CCTAATGCCCATGCATGACTGAAAAGCAAGCCGAGAAGATGCGGGTGCGG GCACTACGGGCTCTCGTGGCTCGTGAAGAGGCGGAAATCGATCGGGATAG AGCACTGGAGCTTACCCTAGAGGTATTGAGGAGGAAACACGCCGACAAGC GGCGGGGAGTCAGCACAATTCCTTCAGCACCAGGTGGGACCGTACTCAAA CCTTTCCCCGCATGCTATTGTGCTTCTATTTCTCCCGAAATCTTTGTCGG TTAGGGTTAGTTTTTGTGCTCCTGCCGTTCGCGTAGTTGAACCCCGGCGT CGAACGATTGCTGCTGTTGCTGCTACTCTTTGGTGCTTCATTTGTTGCCG GCGGCGTCCTCGTTAAGACAGTATCACTGTCGCAACGTGAAAAAACGTCA GTGATCGCAGGCTAGGACAACAAGGGCAAAAGGAAAAACACGAAATGACA GCAACGCCGTCCGAACGTCCCAGAAGAACAAGAAAAGCCGCCACGCCGAT GTTGTAACACGTGTTTCTGAGGGTAGAGTGTAGCCAAGTTGACACGCCCT ACATTTCTACCATCAGCACGGGCAATCACGGCTTGACACGGCAGCCATCG ACTCCAAATATGTCTTCATACACTACTCAGTCAGGCCCATGTGGTGGAGA CTGCCCCATACAAAAGCATCCCATTCTCCAAGTGCGCCAATGTCTTGTTG AAGGAATTGCTTCTGACAGCTAATGTTTGCTGTCCTTGTGTCAACAGGCA GCAAGAGGGCGCATTCCCCGCCAAGGAAAAGCAGGAGACCGGATGACCAC CGGACTAACTTGGCGAGGAGGGTTAAGGACTCGGCCGCCAGGTCGGTCGT GGTTGCTGTAATCGGTCGGCGGTGTCCTATTTAAAAAAATAAAAACTAGG TTGTCTTGTGTGCGTTAGGATGTAGAAAACAAGTACCGCAGACAAACAAG GATTGTCCGCGACCATGGTTCAACACCACTACCGCCAACAACAACATTGC CATCAGCACCACCAACGCTCCCATTCTCAGAATGGATGCTTCGTCTTATC ACCGCGGCAACAGCGACAAAATGTCAACCGCAACACGAACATGCAGCAGC AACCACAACCATCTCGACGACAGCAGGTCGTGCGGCCTGAGCCAGGCGCA GGTTCTCCTGCTCCGAAGGTCGAGGAAACTTGGTCGAGAGGGCGACGCGC CCAGGACGGTTTCCGAGAGGCGAACGGAACAGCTGGCTCAACCAAAAGAA CACCGACCAGCCACGCGAGCAAGGTGTGGCCGAGTGATGACACTGGCATC TGGCAGCAGCACCAGTGTAGCTGCCCTCCCTGCGAGGGAGATGCAGATGA AAACCCGCTGGTATCTTGTCTTTCGCAGACAACTCGCTTCTAAGATTCCT GTTTTTCAACCTCTCGGGGAGTTTCACGACCTTTCCCCCTGGTCGGTCAT CTCCGTCATTTTTCGTGTAGAAATCCGGCCACCGAGGCGTTGGTGGAGGA GCTAACAAGAACAATGACTGACACGGAAAAACGAGCGTTCTTACACGCGT GTTTGGCGGATGCCAAGGAGTGCACCCATCGACCATACACCCGTTCGGCA GCAGCAGCCGCTCGACACCGAAGGGGCGGTGCGGGTGATGGTGGAACAGG GGGTGGTGAGGAGGCCAAGGATGGGTCGGGACCCGGAACAAGTATTGACG CGTTCCTTTATCGAATGGACGCCCAAGAGCGAGCCAAGTGAGCCATCTGA TTGCTCGGTAAATTTTGTTTGTGAAACAGCGGCTGAAATCGTAATATTGG AGAAAACGCCTTCTCTTGCACAAATACCGGTATAGAAGCTTTTGTGTGGT GCGCTCGCAATGAACGATGCGATGTAGAAATCGTCGCAACAATGCTGTAC ACAACAGACCTGTGATCGGGACATTGCCGTCGTCCACGAAGAATAGTGTT TGCTTGCTGATGCCTATTCGAACGACGCTTTTCACCAAAAACAGGAACGC CGCGATGGAGCATCGTCGAGGCGAGCTGGCATACAAGGCCGTTCTGGACA AACGAGTTTGCCCAGGCTGCGGGGCCGAGCAATCCTATGATGAGGTAGGC TGCGGTACGAAGTGTCACTTTGATATGGGTAAGCACGCCACACCGAAAAT ACGCTATATCACGAGTTTGGTGTCTGCATTAGTAGTCATGATCAACACCT ACATAGTTCCTGGTGTTTTAGTATTGACCCACGTAGATCAAGCAAGGGCA TTTTCCGCGAGTTAACTTAGGCATGGGCCATGAACCCAGATGGGGGCGCT GGCAAATGGAACCCTAGGATATCGCCTTGTGTACGGGACAACTTGTATCT AGTTGCGCATTTCGTTGATGCTTATTATTCAGGTTGAGGAGAAACGAAAG ATATGCCCGAACTGTGAGGCTGAATATCGGAAGCCGAAGACGTGGGCAAG CGTCCGAAAGGTGAGGAAAAGTAATGTGTAACGGGAACATTGTAGATTTC AGTTGGCACAAATATGCGATATGTAGATTGAGACGACGACATGCATCACA AGGCGTAAGACATGGATTTTCAGCAACTGCAGTGGTGGTCGACCAATACC AGAGGGCGCCATGTCCGGAGTGTCAAGTGGATAAACGTACGTCGTGTTGC CTTCAAGTTGGCTTCAAAGTGGCATAGTCCGCGATAATAGTGTAGCGTAT TGTATTTTCTCTGGCATGTGTTGATGTTTTTTCGTCCGTCGGACTTTCGC TCCCACGATAGCGTTGCTTAGTCGAAGACCCTGAGGTCGATCAATCTCGG CGGCTCTCCAAAAAAGTGCAAAATGTTTTGCCTCGCGCTCCCCGTTTTCC CGTCAAGGATTTCCTGAATCGTGTGGAGGCATTTCAAGAGTCGAAACGGG AAGCTTTTCAGGCTGCTATGCAAGGCACGGTAAGACAGGTACGCAGGCAC CGAGCGAAAATTGCCATTTGTTTGCACAGGCAATCTACTGCAATGCGCCT TGATACGATAGTATCATTGCAACGCTCGCGCAGAAAACAACCCAGAAGTT TGAATGAATGTATGACTATTTATTTGTGTGCCTGCCTATGCTCCACAAAT AGATGCGGACGTATGCGCTTGGAAGCCGCCGTAGCTGCGACGGCGCCGAG AGGGAACGCTTGTTCTGGGAGGACATCGAGGACGACTTCGTTTTCAGGTA GTGCGAACCCTTCACACAGTTGTTTGGGGATACAGTGTGGAGGTGCTTCA CGTCAAAGCCATCGATCACAAACGTTTTCCCTTAGATGATGAGCAGCAAT GTCTTCGTTGTTATTTCGGGTGCGTTCTTGGCCCCACCACATACATGCGT TTTTCCGCTTGTCGTTTCGACGATCATTCGCTCCACAGGCTGCAGGAGGA TGCAGCCAGACGGCAAGCGTCTCTTGAATCTCGGTCAGCGGCTCTTTACC AGGACTGGACGTTCCGGCCTACGCTCAGCGCCGCTAGCGAGCGTGTTGTA GACGAAAGCGCATGGGCAGGTTCGTTCTCCGAACTACTGTACACTTTTCG GTTGTCACCGGCTCTACATGCAGGGCAGTTAGATTCAGGGGTGCGTGTCA AAGTTTGCGCAGACGTTTCCCTTCATCTCGCAGCAACTCGTACCCACTTC CTCGCCTCCCGAACATTCTGGTCAGCAGGCATG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10233:1388..5870-

>mRNA_Ecto-sp13_S_contig10233.260.1 ID=mRNA_Ecto-sp13_S_contig10233.260.1|Name=mRNA_Ecto-sp13_S_contig10233.260.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1203bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10233:1388..5870- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGAGAGCGGCAGAGGCGATAGCTCTCGAAGACGCCCGGATACTTGC
ACAAGCGAAACGCCAAGAAGAGCAGCGAAGGCGCCACTCAGAGCACAGGG
TGGCCGCATCGCCCCCCTTTCCAAGGCCTGAAGACGACCACGGCGACGAC
CCTGCCGAAGAAGAAGACGACGACGCCAGAGCCCGGCAAGCCGAGAAGAT
GCGGGTGCGGGCACTACGGGCTCTCGTGGCTCGTGAAGAGGCGGAAATCG
ATCGGGATAGAGCACTGGAGCTTACCCTAGAGGTATTGAGGAGGAAACAC
GCCGACAAGCGGCGGGGAGTCAGCACAATTCCTTCAGCACCAGGCAGCAA
GAGGGCGCATTCCCCGCCAAGGAAAAGCAGGAGACCGGATGACCACCGGA
CTAACTTGGCGAGGAGGGTTAAGGACTCGGCCGCCAGCAGGTCGTGCGGC
CTGAGCCAGGCGCAGGTTCTCCTGCTCCGAAGGTCGAGGAAACTTGGTCG
AGAGGGCGACGCGCCCAGGACGGTTTCCGAGAGGCGAACGGAACAGCTGG
CTCAACCAAAAGAACACCGACCAGCCACGCGAGCAAGAAATCCGGCCACC
GAGGCGTTGGTGGAGGAGCTAACAAGAACAATGACTGACACGGAAAAACG
AGCGTTCTTACACGCGTGTTTGGCGGATGCCAAGGAGTGCACCCATCGAC
CATACACCCGTTCGGCAGCAGCAGCCGCTCGACACCGAAGGGGCGGTGCG
GGTGATGGTGGAACAGGGGGTGGTGAGGAGGCCAAGGATGGGTCGGGACC
CGGAACAAGTATTGACGCGTTCCTTTATCGAATGGACGCCCAAGAGCGAG
CCAAGAACGCCGCGATGGAGCATCGTCGAGGCGAGCTGGCATACAAGGCC
GTTCTGGACAAACGAGTTTGCCCAGGCTGCGGGGCCGAGCAATCCTATGA
TGAGGTTGAGGAGAAACGAAAGATATGCCCGAACTGTGAGGCTGAATATC
GGAAGCCGAAGACGTGGGCAAGCGTCCGAAAGGATTTCCTGAATCGTGTG
GAGGCATTTCAAGAGTCGAAACGGGAAGCTTTTCAGGCTGCTATGCAAGG
CACGATGCGGACGTATGCGCTTGGAAGCCGCCGTAGCTGCGACGGCGCCG
AGAGGGAACGCTTGTTCTGGGAGGACATCGAGGACGACTTCGTTTTCAGG
TAG
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