prot_Ecto-sp13_S_contig13189.2585.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig13189.2585.1
Unique Nameprot_Ecto-sp13_S_contig13189.2585.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length376
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13189.2585.1 vs. uniprot
Match: A0A6H5KX21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX21_9PHAE)

HSP 1 Score: 553 bits (1424), Expect = 6.650e-189
Identity = 337/376 (89.63%), Postives = 344/376 (91.49%), Query Frame = 0 
Query:    1 MASVAALAFCSAAAPSHVSFLGATGSLGTSHWAAAFPTNSRAXXXXXXSTSSLRPKEYVNVKHGGRSRRRPLLSLTRAGPWSPPPPLPASALRDSAPRERHREXXXXXXXXXXXXXXXXXXRTLLRRVRGARAPPXRTXXXXXXXXXXXXXAGAERPPAKLKHAGLVLVPWLWRPFQQPVVAKSAGGAAAGPVLEVGARTMSATTRVTKPALSFVQLQVRREAILSALILVVAPLLLRWWARREAEHHDTLECRNVVQTYLIASSGWACAVLAAVAGKPISAVVLQAAWRVAAARSLWTWSDLGRGLIKTPGWLHASVAWWRGAATLLAGAGAVARILVLLIAMTGTWTATTAAGALCAPTLDFLPAGLVRWASTP 376
            MASVAALAFCSAAAPSHVS +G+TG+L TSHWAAAFPTNS  XXXXXX TSSLRPKEYVNVKHGGRSRRRP LSLTRAGPWS PPPLPASALRDSAPRERHRE XXXXXXXXXXXXXXXXX              X  XXXXXXXXXXXX AGAERPPA+LKHAGLVLVPWLW PFQQPVVAKSAGGAAAGPVLEVGARTMSATTRVTK ALSFVQLQVRREAILSALIL+VAPL+LRWWARREAEHHDTLECRNVVQTYLIASSGW CAVLAAVAGKPISAVVLQAAWR AAARSLWTWSDLGRGL KTPGWLHASVAWWRGAATL+AGAGAVARILVLLIA TGTWTATTAAGALCAP LDFLPAGLVRWASTP
Sbjct:    1 MASVAALAFCSAAAPSHVSCMGSTGALSTSHWAAAFPTNSXXXXXXXXXTSSLRPKEYVNVKHGGRSRRRPPLSLTRAGPWSTPPPLPASALRDSAPRERHREEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAGAERPPAQLKHAGLVLVPWLWWPFQQPVVAKSAGGAAAGPVLEVGARTMSATTRVTKSALSFVQLQVRREAILSALILIVAPLVLRWWARREAEHHDTLECRNVVQTYLIASSGWVCAVLAAVAGKPISAVVLQAAWRAAAARSLWTWSDLGRGLTKTPGWLHASVAWWRGAATLVAGAGAVARILVLLIATTGTWTATTAAGALCAPILDFLPAGLVRWASTP 376
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BLAST of mRNA_Ecto-sp13_S_contig13189.2585.1 vs. uniprot
Match: D7FN96_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN96_ECTSI)

HSP 1 Score: 327 bits (837), Expect = 3.080e-103
Identity = 170/176 (96.59%), Postives = 171/176 (97.16%), Query Frame = 0 
Query:  201 MSATTRVTKPALSFVQLQVRREAILSALILVVAPLLLRWWARREAEHHDTLECRNVVQTYLIASSGWACAVLAAVAGKPISAVVLQAAWRVAAARSLWTWSDLGRGLIKTPGWLHASVAWWRGAATLLAGAGAVARILVLLIAMTGTWTATTAAGALCAPTLDFLPAGLVRWASTP 376
            MSATTR TKPALSFVQLQVRREAILSALILV APLLLRWWARREAEHHDTLECRNVVQTYLIASSGWACAVLAAVAGKPISAVVLQAAWR AAARSLWTWSDLGRGLI+TPGWLHASVAWWRGAATLLAGAGAV RIL LLIAMTGTWTATTAAGALCAPTLDFLPAGLVRWASTP
Sbjct:    1 MSATTRATKPALSFVQLQVRREAILSALILVAAPLLLRWWARREAEHHDTLECRNVVQTYLIASSGWACAVLAAVAGKPISAVVLQAAWRAAAARSLWTWSDLGRGLIRTPGWLHASVAWWRGAATLLAGAGAVTRILGLLIAMTGTWTATTAAGALCAPTLDFLPAGLVRWASTP 176
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13189.2585.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KX21_9PHAE6.650e-18989.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FN96_ECTSI3.080e-10396.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021515Protein of unknown function DUF3177PFAMPF11375DUF3177coord: 222..353
e-value: 9.2E-7
score: 28.8
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..33
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 261..289
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 290..318
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 344..376
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 242..260
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..15
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 319..343
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 34..222
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..33
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 223..241
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availableTMHMMTMhelixcoord: 318..340
NoneNo IPR availableTMHMMTMhelixcoord: 261..283
NoneNo IPR availableTMHMMTMhelixcoord: 223..240

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13189contigEcto-sp13_S_contig13189:2..3278 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13189.2585.1mRNA_Ecto-sp13_S_contig13189.2585.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig13189 2..3278 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig13189.2585.1 ID=prot_Ecto-sp13_S_contig13189.2585.1|Name=mRNA_Ecto-sp13_S_contig13189.2585.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=376bp
MASVAALAFCSAAAPSHVSFLGATGSLGTSHWAAAFPTNSRATAFPTGST
SSLRPKEYVNVKHGGRSRRRPLLSLTRAGPWSPPPPLPASALRDSAPRER
HREEQLQQQQPLPSSTLLAAARTLLRRVRGARAPPPRTPRPAAAAAVAAA
GAGAERPPAKLKHAGLVLVPWLWRPFQQPVVAKSAGGAAAGPVLEVGART
MSATTRVTKPALSFVQLQVRREAILSALILVVAPLLLRWWARREAEHHDT
LECRNVVQTYLIASSGWACAVLAAVAGKPISAVVLQAAWRVAAARSLWTW
SDLGRGLIKTPGWLHASVAWWRGAATLLAGAGAVARILVLLIAMTGTWTA
TTAAGALCAPTLDFLPAGLVRWASTP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR021515DUF3177