mRNA_Ecto-sp13_S_contig10230.258.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10230.258.1
Unique NamemRNA_Ecto-sp13_S_contig10230.258.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10230.258.1 vs. uniprot
Match: D7FIY9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIY9_ECTSI)

HSP 1 Score: 224 bits (572), Expect = 5.320e-66
Identity = 121/133 (90.98%), Postives = 125/133 (93.98%), Query Frame = 1 
Query:    1 QVSSLYRDYSGPLLAPMTLRGVLRMARDAGLQERVGLTSADVKKMFKQANAFLQSRDGPATPDIAGSTPPRGAATEVADADKKESNAVEALGLSSSSTAVGGGGVGSPLPTVDSATVCLVGAAPCTVDLDLLD 399
            QVSSLYRD+SGP L PMTLRG+LRMARDAGLQERVGLTS DVKKMFKQANAFLQSRDGPATPDIAGSTPP GAAT+VAD D+KESN VEALGLSSS TAVGGGGVG PLPTVDSATVCLVGAAPCTVDLDLLD
Sbjct:  646 QVSSLYRDFSGPSLEPMTLRGLLRMARDAGLQERVGLTSEDVKKMFKQANAFLQSRDGPATPDIAGSTPPCGAATKVADPDRKESNPVEALGLSSS-TAVGGGGVGFPLPTVDSATVCLVGAAPCTVDLDLLD 777
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BLAST of mRNA_Ecto-sp13_S_contig10230.258.1 vs. uniprot
Match: A0A6H5L2J7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2J7_9PHAE)

HSP 1 Score: 218 bits (554), Expect = 2.280e-63
Identity = 117/132 (88.64%), Postives = 122/132 (92.42%), Query Frame = 1 
Query:    4 VSSLYRDYSGPLLAPMTLRGVLRMARDAGLQERVGLTSADVKKMFKQANAFLQSRDGPATPDIAGSTPPRGAATEVADADKKESNAVEALGLSSSSTAVGGGGVGSPLPTVDSATVCLVGAAPCTVDLDLLD 399
            VSSLYR YSGPLL PMTLRG+LRMARDAGLQERVGLTS DVK++FKQANAFLQSRDGPATPDIAGSTPPRGA T+VAD DKKE N VEAL LSSS TA+GGGGVG PLPTVDSATVCLVGAAPCTVDLDLLD
Sbjct:  676 VSSLYRIYSGPLLVPMTLRGLLRMARDAGLQERVGLTSEDVKRIFKQANAFLQSRDGPATPDIAGSTPPRGAVTKVADPDKKEGNPVEALRLSSS-TALGGGGVGFPLPTVDSATVCLVGAAPCTVDLDLLD 806
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10230.258.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FIY9_ECTSI5.320e-6690.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2J7_9PHAE2.280e-6388.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10230contigEcto-sp13_S_contig10230:4593..5438 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score226.9
Seed ortholog evalue5.7e-57
Seed eggNOG ortholog2880.D7FIY9
Preferred nameRSPH10B
Model size401
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.regulation of ryanodine-sensitive calcium-release channel activity
EggNOG OGsCOG4642@1,KOG0231@2759
Ec32 ortholog descriptionMORN motif
Ec32 orthologEc-07_005070.1
Cds size399
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462517.5009263-CDS-Ecto-sp13_S_contig10230:4593..48601681462517.5009263-CDS-Ecto-sp13_S_contig10230:4593..4860Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10230 4594..4860 -
1681462517.5118446-CDS-Ecto-sp13_S_contig10230:5306..54381681462517.5118446-CDS-Ecto-sp13_S_contig10230:5306..5438Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10230 5307..5438 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10230.258.1prot_Ecto-sp13_S_contig10230.258.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10230 4594..5438 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10230.258.1

>prot_Ecto-sp13_S_contig10230.258.1 ID=prot_Ecto-sp13_S_contig10230.258.1|Name=mRNA_Ecto-sp13_S_contig10230.258.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=133bp
QVSSLYRDYSGPLLAPMTLRGVLRMARDAGLQERVGLTSADVKKMFKQAN
AFLQSRDGPATPDIAGSTPPRGAATEVADADKKESNAVEALGLSSSSTAV
GGGGVGSPLPTVDSATVCLVGAAPCTVDLDLLD
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mRNA from alignment at Ecto-sp13_S_contig10230:4593..5438-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10230.258.1 ID=mRNA_Ecto-sp13_S_contig10230.258.1|Name=mRNA_Ecto-sp13_S_contig10230.258.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=846bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10230:4593..5438- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTTAGCTCTCTATACCGTGACTACTCAGGACCTTTGCTCGCTCCGAT
GACGCTAAGGGGCGTGTTGAGGATGGCCCGAGATGCTGGTCTACAGGAAC
GGGTCGGCCTGACGTCAGCGGATGTCAAAAAGGTGCGGCCCAACCGAGAA
ACATCACGATATTGTACTAGGGATTTCGTCTTGTCTGTAAGAGTGGAATA
GCGTAGACAATCCAATCGAAACTCTCGCGAACAAAGGAGCTTATCCGCCG
GGAGAATTGGGGAGGCCTGAAACAAAGCTCTTGTGAAAACTGTGGCTCCT
GCCCCGCTCGTCAGTCTCGATGTACAGAAATTTTACCGCACGTTCTCAAC
GGATTTTCCACGGCAAGAATATTTCGTTCAAGGACAGTGTTTGCTGTCGG
GGGTCGGTGATACATGTTGTCCAACACCTGCCCATCATACCCAAACAGCT
GTCGTTTGCCCGCAATGCACCCTCCGGCTCAGCCAGCGCCCTCACCCTGT
GCGAAACACGATGCCTGAGCACTCGCCGCTCCTGCCTTCCTCACTACCTC
CCTCACCGTCTGCGTCCAAACGTAGCAGATGTTCAAGCAGGCGAACGCTT
TCCTGCAGAGCCGAGATGGCCCCGCGACTCCGGACATCGCCGGTTCGACA
CCGCCACGCGGTGCTGCCACCGAGGTCGCCGATGCCGATAAGAAAGAAAG
CAATGCTGTAGAAGCGCTGGGACTATCATCCTCGTCCACCGCCGTGGGGG
GCGGAGGCGTAGGGTCCCCTCTGCCGACGGTGGATTCGGCTACGGTGTGT
CTCGTGGGCGCCGCACCCTGCACGGTGGACCTCGACTTGCTTGACC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10230:4593..5438-

>mRNA_Ecto-sp13_S_contig10230.258.1 ID=mRNA_Ecto-sp13_S_contig10230.258.1|Name=mRNA_Ecto-sp13_S_contig10230.258.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=399bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10230:4593..5438- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTTAGCTCTCTATACCGTGACTACTCAGGACCTTTGCTCGCTCCGAT
GACGCTAAGGGGCGTGTTGAGGATGGCCCGAGATGCTGGTCTACAGGAAC
GGGTCGGCCTGACGTCAGCGGATGTCAAAAAGATGTTCAAGCAGGCGAAC
GCTTTCCTGCAGAGCCGAGATGGCCCCGCGACTCCGGACATCGCCGGTTC
GACACCGCCACGCGGTGCTGCCACCGAGGTCGCCGATGCCGATAAGAAAG
AAAGCAATGCTGTAGAAGCGCTGGGACTATCATCCTCGTCCACCGCCGTG
GGGGGCGGAGGCGTAGGGTCCCCTCTGCCGACGGTGGATTCGGCTACGGT
GTGTCTCGTGGGCGCCGCACCCTGCACGGTGGACCTCGACTTGCTTGAC
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