mRNA_Ecto-sp13_S_contig13150.2562.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13150.2562.1
Unique NamemRNA_Ecto-sp13_S_contig13150.2562.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13150.2562.1 vs. uniprot
Match: D7FRQ4_ECTSI (Protein YIPF n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRQ4_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 1.420e-29
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1 
Query:    1 LRGNLGHVLGFVAVAWCTISATRLFEEYLEMRRQRYLVAYPVGLLYACFVLITVY 165
            LRGNLGHVLGFVAVAWCTISATRLFEEYLEMRRQRYLVAYPVGLLYACFVLITVY
Sbjct:  291 LRGNLGHVLGFVAVAWCTISATRLFEEYLEMRRQRYLVAYPVGLLYACFVLITVY 345
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BLAST of mRNA_Ecto-sp13_S_contig13150.2562.1 vs. uniprot
Match: A0A6H5JG11_9PHAE (Protein YIPF n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG11_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 1.470e-29
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1 
Query:    1 LRGNLGHVLGFVAVAWCTISATRLFEEYLEMRRQRYLVAYPVGLLYACFVLITVY 165
            LRGNLGHVLGFVAVAWCTISATRLFEEYLEMRRQRYLVAYPVGLLYACFVLITVY
Sbjct:  293 LRGNLGHVLGFVAVAWCTISATRLFEEYLEMRRQRYLVAYPVGLLYACFVLITVY 347
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BLAST of mRNA_Ecto-sp13_S_contig13150.2562.1 vs. uniprot
Match: A0A7S2G127_9STRA (Protein YIPF n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G127_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 1.020e-15
Identity = 32/55 (58.18%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:    1 LRGNLGHVLGFVAVAWCTISATRLFEEYLEMRRQRYLVAYPVGLLYACFVLITVY 165
            L G +G+    +AV WCT++ATRLFE+ L M++QR L+AYPVGLLY+CFVL+T++
Sbjct:  219 LSGAVGNAFALLAVVWCTVTATRLFEQALSMKKQRLLIAYPVGLLYSCFVLMTIF 273
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BLAST of mRNA_Ecto-sp13_S_contig13150.2562.1 vs. uniprot
Match: A0A835Z6H4_9STRA (Protein YIPF n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6H4_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 4.180e-14
Identity = 31/55 (56.36%), Postives = 42/55 (76.36%), Query Frame = 1 
Query:    1 LRGNLGHVLGFVAVAWCTISATRLFEEYLEMRRQRYLVAYPVGLLYACFVLITVY 165
            L G +G  L   AVAW   +AT+LFE+YL+MR QR+L+AYP+GLLY CFVL+ ++
Sbjct:  171 LSGRVGLALAGAAVAWSCTAATKLFEQYLDMRHQRWLIAYPIGLLYCCFVLMAIF 225
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BLAST of mRNA_Ecto-sp13_S_contig13150.2562.1 vs. uniprot
Match: A0A7S2RUP4_9STRA (Protein YIPF n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RUP4_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 7.110e-14
Identity = 30/55 (54.55%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:    1 LRGNLGHVLGFVAVAWCTISATRLFEEYLEMRRQRYLVAYPVGLLYACFVLITVY 165
            +RG  G+ L    V W T++ATR FE+  +MR+QRYL+AYP+GLLY CFVLI ++
Sbjct:   46 MRGWFGNALATGCVGWSTLAATRQFEKLFDMRQQRYLMAYPIGLLYTCFVLIAMF 100
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BLAST of mRNA_Ecto-sp13_S_contig13150.2562.1 vs. uniprot
Match: A0A0G4FG04_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FG04_VITBC)

HSP 1 Score: 71.6 bits (174), Expect = 9.090e-14
Identity = 33/55 (60.00%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:    1 LRGNLGHVLGFVAVAWCTISATRLFEEYLEMRRQRYLVAYPVGLLYACFVLITVY 165
            LRG LG +L  + + WCT +A+R FE  L M  QRYLVAYP+ LLY CFVLITV+
Sbjct:  178 LRGTLGTILSPLCIIWCTATASRFFETALLMHHQRYLVAYPICLLYTCFVLITVF 232
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BLAST of mRNA_Ecto-sp13_S_contig13150.2562.1 vs. uniprot
Match: A0A197JDV0_9FUNG (Protein YIP n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197JDV0_9FUNG)

HSP 1 Score: 68.6 bits (166), Expect = 6.830e-13
Identity = 30/55 (54.55%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:    1 LRGNLGHVLGFVAVAWCTISATRLFEEYLEMRRQRYLVAYPVGLLYACFVLITVY 165
            L G LG++L  +A+AWCT S++  F   L M  QR+LVAYPVGL Y CF L+TV+
Sbjct:  134 LNGGLGYILSALAIAWCTYSSSGFFTAVLGMNDQRFLVAYPVGLFYGCFALMTVF 188
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BLAST of mRNA_Ecto-sp13_S_contig13150.2562.1 vs. uniprot
Match: A0A0G4GYC3_9ALVE (Protein YIPF n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GYC3_9ALVE)

HSP 1 Score: 69.7 bits (169), Expect = 7.160e-13
Identity = 34/55 (61.82%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:    1 LRGNLGHVLGFVAVAWCTISATRLFEEYLEMRRQRYLVAYPVGLLYACFVLITVY 165
            LR + G V+  + V WCT +A+R FE  L M  QRYLVAYPV LLYACFVLITV+
Sbjct:  210 LRQSFGLVVAPLCVVWCTATASRFFETALNMTHQRYLVAYPVFLLYACFVLITVF 264
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BLAST of mRNA_Ecto-sp13_S_contig13150.2562.1 vs. uniprot
Match: A0A7S2CK89_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CK89_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 7.670e-13
Identity = 31/55 (56.36%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:    1 LRGNLGHVLGFVAVAWCTISATRLFEEYLEMRRQRYLVAYPVGLLYACFVLITVY 165
            L G +G+ +G  AV W T++ATRLF   L M   R+L+AYPVGLLYACFVL+T++
Sbjct:  104 LTGIIGNFIGAGAVGWSTLTATRLFVMSLNMESARFLIAYPVGLLYACFVLMTIF 158
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BLAST of mRNA_Ecto-sp13_S_contig13150.2562.1 vs. uniprot
Match: A0A7S0DM30_9EUKA (Protein YIPF n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DM30_9EUKA)

HSP 1 Score: 68.2 bits (165), Expect = 8.180e-13
Identity = 31/55 (56.36%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:    1 LRGNLGHVLGFVAVAWCTISATRLFEEYLEMRRQRYLVAYPVGLLYACFVLITVY 165
            L+G +G     V + WCT++ATR  E  L+MR QRYLVAYP+ LLY+CF LITV+
Sbjct:  125 LKGYIGFSTTTVTILWCTVAATRFVEATLDMRPQRYLVAYPLMLLYSCFALITVF 179
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13150.2562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRQ4_ECTSI1.420e-29100.00Protein YIPF n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A6H5JG11_9PHAE1.470e-29100.00Protein YIPF n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A7S2G127_9STRA1.020e-1558.18Protein YIPF n=1 Tax=Dictyocha speculum TaxID=3568... [more]
A0A835Z6H4_9STRA4.180e-1456.36Protein YIPF n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A7S2RUP4_9STRA7.110e-1454.55Protein YIPF n=1 Tax=Rhizochromulina marina TaxID=... [more]
A0A0G4FG04_VITBC9.090e-1460.00Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A197JDV0_9FUNG6.830e-1354.55Protein YIP n=1 Tax=Linnemannia elongata AG-77 Tax... [more]
A0A0G4GYC3_9ALVE7.160e-1361.82Protein YIPF n=1 Tax=Chromera velia CCMP2878 TaxID... [more]
A0A7S2CK89_9STRA7.670e-1356.36Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S0DM30_9EUKA8.180e-1356.36Protein YIPF n=1 Tax=Amorphochlora amoebiformis Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13150contigEcto-sp13_S_contig13150:7..174 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score114.0
Seed ortholog evalue2.3e-23
Seed eggNOG ortholog2880.D7FRQ4
Preferred nameYIPF4
Model size168
KEGG koko:K20363
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0005886,GO:0012505,GO:0016020,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0071944
Exons1
EggNOG free text desc.vesicle-mediated transport
EggNOG OGsCOG5080@1,KOG3103@2759
Cds size168
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462704.1912327-CDS-Ecto-sp13_S_contig13150:6..1741681462704.1912327-CDS-Ecto-sp13_S_contig13150:6..174Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13150 7..174 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13150.2562.1prot_Ecto-sp13_S_contig13150.2562.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13150 7..174 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13150.2562.1

>prot_Ecto-sp13_S_contig13150.2562.1 ID=prot_Ecto-sp13_S_contig13150.2562.1|Name=mRNA_Ecto-sp13_S_contig13150.2562.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=56bp
LRGNLGHVLGFVAVAWCTISATRLFEEYLEMRRQRYLVAYPVGLLYACFV
LITVY*
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mRNA from alignment at Ecto-sp13_S_contig13150:7..174+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13150.2562.1 ID=mRNA_Ecto-sp13_S_contig13150.2562.1|Name=mRNA_Ecto-sp13_S_contig13150.2562.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13150:7..174+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGCGTGGGAACTTGGGGCACGTGCTGGGGTTCGTGGCGGTGGCCTGGTG
CACTATTTCGGCCACCCGCTTGTTCGAGGAGTATCTGGAGATGCGAAGAC
AGCGGTATCTTGTGGCGTACCCTGTAGGCCTGCTGTATGCTTGTTTCGTT
CTCATCACTGTGTACTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13150:7..174+

>mRNA_Ecto-sp13_S_contig13150.2562.1 ID=mRNA_Ecto-sp13_S_contig13150.2562.1|Name=mRNA_Ecto-sp13_S_contig13150.2562.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13150:7..174+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGCGTGGGAACTTGGGGCACGTGCTGGGGTTCGTGGCGGTGGCCTGGTG
CACTATTTCGGCCACCCGCTTGTTCGAGGAGTATCTGGAGATGCGAAGAC
AGCGGTATCTTGTGGCGTACCCTGTAGGCCTGCTGTATGCTTGTTTCGTT
CTCATCACTGTGTACTAA
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