mRNA_Ecto-sp13_S_contig13148.2559.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13148.2559.1
Unique NamemRNA_Ecto-sp13_S_contig13148.2559.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13148.2559.1 vs. uniprot
Match: D7FZT6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZT6_ECTSI)

HSP 1 Score: 382 bits (981), Expect = 2.290e-117
Identity = 471/574 (82.06%), Postives = 474/574 (82.58%), Query Frame = 1 
Query:    4 DQGEWATATTXXXXXXXXXXXXXXXXXXXXYANGRGMDDRRGGRGGMADKMRGLRLDGDRGGYRGGXXXXXXXXXXSAPPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPPQAANASTESSGGWGASAKAPAAGSAWTGDGPAAVTEAVAVDAGTDSSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAPMAHNGWSSSAQDPVAPGPVGSGSGSLGGXXXXXXXXXXXXXXXXXXXXX-AAAWAQSNLPATSAWSRGAATIINPKPKPVXXXXXXAAPSAPXXXXAXP------AAQPAVQPAXXXXXXXXXXXXXXXXXXXXXXXXXXPQTPRPQGSMPSVAETAAAAA-SPSIGSPAVAVSSPSPVARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSPXXXXXXXPATAPGSQLHLQKAQAQEASAVSKPTAATGASAPGEGLKMGKWGLSDTIANDESFLSFGQLSFGVPDVGGPESQSQQTSTSVGTSAGNGWGATSGSAMGWGTKDTATSPVET 1701
            DQGEWATAT XXXXXXXXXXXXXXXXXXXXYANGRGMDDRRGGRGGMADKMRGLRLDGDRGGYRGGXXXXXXXXXXSAPPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                GASAKAPAAGSAWTGDGPAAV+EA           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAPMAHNGWSSSAQDPVAPGPVGSGSGSLGGXXXXXXXXXXXXXXXXXXXXX AAAWAQSNLPATSAWSRGAATIINPKPKPV  XXX A     XXXX X       AA P +                             PQTPRPQGSMPSVAETAAAAA SP+IGS    V        XXXXXXXXXXXXXXXXXXXXXXXXXXXX    PSP       PATAPGSQLHLQKAQAQEASAVSKPTAATGASAPGEGLKMGKWGLSDTIANDESFLSFGQLSFGVPDVGGPESQSQQTSTSVGTSAGNGWGATSGSAMGWGTKDTATSPVET
Sbjct:   59 DQGEWATATXXXXXXXXXXXXXXXXXXXXXYANGRGMDDRRGGRGGMADKMRGLRLDGDRGGYRGGXXXXXXXXXXSAPPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--XGASAKAPAAGSAWTGDGPAAVSEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAPMAHNGWSSSAQDPVAPGPVGSGSGSLGGXXXXXXXXXXXXXXXXXXXXXXAAAWAQSNLPATSAWSRGAATIINPKPKPVPVXXXVAXXXXXXXXXXXXXXXXXXAAHPTLP--------------VVASPGGEAVAATPPQTPRPQGSMPSVAETAAAAAASPAIGSXXXXVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAAPSPVTAAVVTPATAPGSQLHLQKAQAQEASAVSKPTAATGASAPGEGLKMGKWGLSDTIANDESFLSFGQLSFGVPDVGGPESQSQQTSTSVGTSAGNGWGATSGSAMGWGTKDTATSPVET 616
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13148.2559.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZT6_ECTSI2.290e-11782.06Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13148contigEcto-sp13_S_contig13148:616..4410 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score389.0
Seed ortholog evalue3.7e-105
Seed eggNOG ortholog2880.D7FZT6
Model size1701
Hectar predicted targeting categoryother localisation
Exons5
EggNOG OGs28M4J@1,2QTMG@2759
Cds size1701
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462703.9134016-CDS-Ecto-sp13_S_contig13148:615..7231681462703.9134016-CDS-Ecto-sp13_S_contig13148:615..723Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13148 616..723 -
1681462703.9223547-CDS-Ecto-sp13_S_contig13148:1518..16651681462703.9223547-CDS-Ecto-sp13_S_contig13148:1518..1665Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13148 1519..1665 -
1681462703.9313304-CDS-Ecto-sp13_S_contig13148:2007..30601681462703.9313304-CDS-Ecto-sp13_S_contig13148:2007..3060Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13148 2008..3060 -
1681462703.943179-CDS-Ecto-sp13_S_contig13148:3573..38041681462703.943179-CDS-Ecto-sp13_S_contig13148:3573..3804Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13148 3574..3804 -
1681462703.9551218-CDS-Ecto-sp13_S_contig13148:4248..44101681462703.9551218-CDS-Ecto-sp13_S_contig13148:4248..4410Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13148 4249..4410 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13148.2559.1prot_Ecto-sp13_S_contig13148.2559.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13148 616..4410 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13148.2559.1

>prot_Ecto-sp13_S_contig13148.2559.1 ID=prot_Ecto-sp13_S_contig13148.2559.1|Name=mRNA_Ecto-sp13_S_contig13148.2559.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=567bp
DDQGEWATATTKKKKQTAPQHHHHPRGGGGGYANGRGMDDRRGGRGGMAD
KMRGLRLDGDRGGYRGGGGGGGRGRGRSAPPAGGRGGGGGRGSGGSHHSG
GWGGAPAPSGGGGGGGGAWNGSSRSSSIPPQAANASTESSGGWGASAKAP
AAGSAWTGDGPAAVTEAVAVDAGTDSSPPAAAVTAASGGGGWAAAVGGSA
PTSSPGPSATVAAASGGSSGWSGGSGAADAAGSSSSSQAPMAHNGWSSSA
QDPVAPGPVGSGSGSLGGAAAGGAAAAGAPQPPPPKEEDAAAWAQSNLPA
TSAWSRGAATIINPKPKPVPVAPAPAAPSAPPAPAAAPAAQPAVQPAPAP
TAAAHPTLPGVASPGGEAVAATPPQTPRPQGSMPSVAETAAAAASPSIGS
PAVAVSSPSPVARPAVSAAAVAVTAPVQVASDSAAVAAAAAVAAAPSPVT
AAAVTPATAPGSQLHLQKAQAQEASAVSKPTAATGASAPGEGLKMGKWGL
SDTIANDESFLSFGQLSFGVPDVGGPESQSQQTSTSVGTSAGNGWGATSG
SAMGWGTKDTATSPVET
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mRNA from alignment at Ecto-sp13_S_contig13148:616..4410-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13148.2559.1 ID=mRNA_Ecto-sp13_S_contig13148.2559.1|Name=mRNA_Ecto-sp13_S_contig13148.2559.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3795bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13148:616..4410- (Ectocarpus species13 EcNAP12_S_4_19m)
GATGACCAAGGTGAGTGGGCGACGGCCACGACGAAGAAAAAGAAGCAGAC
CGCTCCTCAGCACCACCACCACCCTCGTGGCGGCGGTGGTGGCTACGCCA
ACGGGCGGGGTATGGACGATCGGAGGGGCGGGCGCGGAGGCATGGCGGAC
AAGATGCGGGGGGTGAGAGAGAATGCAGGAATTCGGATGTGTGTGTGTAT
TTGTGTCTGTTCGTTGGCGACGGAATTGTGAAAGATGGTACGGCCTTGTC
GTTTTCTGATGCCAAAGGGGTGTGTGGGTCGGGTACAGGAACATGTCTTT
TGCCCTTCCCCCTCCCAGTTGGCGGCCCCATATCTGTCACTCAGACGGAA
AAGCAACTGCTGTATGGTACATGCCCGGGAGGTCTATTTTCTTGACTTTG
CAGTTCTCCTGGTGTTCGTTGCGCCGGAAAGGCAGAGCACGATGTGGCCA
CTCCATCCGGCCGTCTGCCGCAACAGCAGCAGCAGCAGCGTTTGCCTCCA
GCACAGTCGCCAATCTTGCCATCCGTTCTTTCCGCACCACACTCCTTTGT
CCCAACGATTTTTCCGCATGTCTCTTTTCTGTCTTCTTCACCTCGCTCAC
GCACAGCTCCGCCTCGACGGTGACCGCGGTGGCTACCGCGGAGGAGGAGG
CGGCGGCGGGCGGGGAAGGGGACGCAGCGCCCCCCCGGCCGGCGGTCGTG
GCGGCGGCGGCGGCCGCGGGAGCGGCGGATCTCACCACTCAGGAGGGTGG
GGCGGCGCCCCTGCTCCCAGCGGCGGCGGAGGCGGCGGCGGTGGTGCTTG
GAACGGCAGCAGCAGGTCAAGTTCAATCCCTCCTCAGGTGCGCGAAGTGT
AGGGTTCAGGCTAAATCGATTAAGCAAACATATGGGATAAAGTATTCAAT
CCGTGCTTTGGGGTTAGAGTTAGGGTTAGGGATAGGGTGTTCGTGTCCCC
TCCCTTTTCTTTTTCTAGATACTCTGAAAAATCCCGTGCACGCGGTTCCA
GCGTCTTTTGTTGCTGCTGTTGTTGTTGGCGCTTATTTCTGAGTGCCGCG
TTTTTTGTGTGGTATCGCCGTGTGCGGCGCCATCCTGCTTTGGGAGCTTT
TGGCGGATCGGAGAAAAAGTTCACGTGTAGAACAAGGCGGGGATTTGACG
CAGGAATACTAACGAGTTCCTCGTTCTGGCAGAAGGCGTTCCCAAGATGT
TTTTGCACAGCTTGCCGGTGGTGAAGGGGCACTGCTGTCCATTGTAGTGT
TGGTGTTTTTTCCTACGCCGAAGGGTCCACTCAGTCCGTGCAGCGTGCAT
TCAACGTTCGCCCTCCCGATGTTACACGCGATCTATCTACGCTATTTCAG
GCCGCTAATGCGTCCACGGAGTCTAGCGGTGGCTGGGGGGCGTCGGCTAA
GGCACCGGCGGCCGGGAGCGCGTGGACCGGCGACGGTCCCGCCGCAGTAA
CTGAAGCCGTCGCCGTAGATGCCGGCACCGATTCGTCCCCCCCCGCTGCC
GCGGTGACGGCCGCGTCCGGAGGTGGAGGGTGGGCAGCAGCCGTAGGAGG
CAGCGCGCCGACCTCATCGCCGGGACCCTCTGCCACCGTCGCGGCGGCAT
CGGGCGGCTCCTCCGGATGGAGCGGCGGGAGCGGAGCCGCTGATGCTGCC
GGGTCTTCCTCTTCTTCCCAGGCGCCAATGGCGCATAACGGTTGGTCGAG
CAGCGCGCAGGACCCCGTGGCTCCGGGGCCGGTGGGCAGCGGAAGCGGCT
CACTCGGAGGAGCAGCAGCAGGCGGCGCGGCGGCGGCGGGCGCCCCCCAG
CCACCGCCGCCAAAGGAGGAAGACGCGGCTGCCTGGGCGCAGTCTAACCT
GCCAGCGACATCGGCGTGGAGCCGCGGCGCGGCCACGATCATCAACCCCA
AGCCGAAGCCGGTTCCAGTGGCGCCGGCGCCTGCGGCGCCTTCGGCACCG
CCGGCGCCCGCTGCCGCGCCCGCCGCTCAGCCCGCCGTCCAGCCCGCACC
CGCGCCCACCGCCGCCGCTCACCCAACCCTTCCGGGCGTAGCGTCGCCCG
GAGGGGAAGCGGTGGCGGCGACGCCGCCGCAGACCCCCCGACCGCAGGGC
TCCATGCCTTCGGTGGCGGAAACGGCAGCGGCGGCGGCTTCGCCCTCGAT
TGGGTCCCCCGCGGTGGCGGTTAGCTCGCCGTCGCCGGTGGCGCGTCCGG
CGGTGTCGGCGGCCGCTGTCGCTGTCACCGCGCCCGTGCAGGTGGCCAGC
GACTCGGCGGCGGTGGCGGCCGCTGCTGCGGTGGCGGCGGCGCCGTCGCC
TGTGACGGCGGCGGCGGTGACCCCGGCGACCGCGCCTGGCTCTCAGCTCC
ACCTTCAGAAGGCGCAGGCGCAGGAGGCTTCGGCGGTGTCGAAGCCTACG
GCGGTGAGATTCAGCCATGGTGTTCTTGTGTGTGTGTTTTCTTGGTTGGC
ACTGTTGGAATCGGATGGGGTCGAGAGACGTGTTGGTAGCGGTTCGGCTC
ATGGTATGCTTTTACACATATACACGTTGTGGTTTGGTGCCATGACGCGT
TGGTCTCAAAATGCATGACTGCGTCCTTTTGCGAGTTTATAGTCTCTGAA
GGGGTGTCAAAGAGCGGTGTCGGGTTGCGTTGGGCGGACGTGATGACTTG
CCTCGCATGCAGTAGTCGAGTCAAGCACTATTGTGCTTGGGTACTGTCGA
TATCGATATGTGTACCACTGGCTATTTGATTCTTGTTTTCGGCAGGCAAC
GGGCGCCTCTGCCCCGGGGGAGGGCCTGAAGATGGGCAAGTGGGGATTGA
GCGACACGATCGCCAACGACGAGTCATTCTTGAGCTTCGGCCAGCTGTCG
TTCGGCGTACCGGACGTTGGGGGTCCGGAAAGCCAGTCCCAGGTACGTGC
TGTGCTTCCAGGCCGTTCGTTGGTTTCAACGATGAAGTTTTCATGTCTGT
TTTTTTTGTTAATGTATCGTCCGTGTGTGTTTTCATCTTTGCCGAGTGCG
TGTAAGGGATGTGTATGCATGTGCGCTCGCCTGTTCCAGAAGAACGGCTC
AACGGGCGCGTGTTGTGAGTCGTTTGTGGCTCGAGGGAAATTGGCATCTG
TAGGTTGGTCACAGGTAGCGTATCTAGGTTTCCCTCTTCAAGAACCCCCC
CCCCTCCCAAATCCACCCTCCGAGTTCGACCGAAAGTTAACACTTCAATT
GCTAGCAGTAGCGAATAGGGTCTGACGCAAGGGCATGTTCATGCCTCGTT
GTCGACCGCGCTTGCCTGTAGCCCAGGGTCCGCACACGTCGCGCGACCGA
CAAGCATCGTGTTTGGGTTTGGTGCCGCGTTCAGCCGAGCTATGGAGGCA
CTGTTGTGTTGTACATGTTGCCCTCTCTGGAGAGACATGAAGAGGGCACA
TTTGTTGTCCTAGTTGTTTTTGTTATGGTCGTCACCATGGACAGCAGCAG
TGAGGGAAGGCAAGGGGTTTATACCAATATTCCTTGCGACTTGGTCGCCG
TTTGGGTAATGCTTTATAATACCCGCTTGTGCTGACTACGTGTTTTCGTA
TCCTAGCATGGACTGCTGCTTGTGCGCGCCACTCGCGTTGCTGAACCTCA
CCCCCCCCTGCCTTCCCCCTGTTCCTCTGCGTATGCTGCTGCTTCTGCGC
TCCATACGTACGCCCTCTCGCTCGCTTGTTCGTTCAGCAAACATCGACGT
CAGTCGGGACGAGCGCTGGAAACGGGTGGGGCGCGACGTCGGGGTCGGCT
ATGGGTTGGGGAACCAAGGACACGGCAACGTCCCCCGTGGAGACT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13148:616..4410-

>mRNA_Ecto-sp13_S_contig13148.2559.1 ID=mRNA_Ecto-sp13_S_contig13148.2559.1|Name=mRNA_Ecto-sp13_S_contig13148.2559.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1701bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13148:616..4410- (Ectocarpus species13 EcNAP12_S_4_19m)
GATGACCAAGGTGAGTGGGCGACGGCCACGACGAAGAAAAAGAAGCAGAC
CGCTCCTCAGCACCACCACCACCCTCGTGGCGGCGGTGGTGGCTACGCCA
ACGGGCGGGGTATGGACGATCGGAGGGGCGGGCGCGGAGGCATGGCGGAC
AAGATGCGGGGGCTCCGCCTCGACGGTGACCGCGGTGGCTACCGCGGAGG
AGGAGGCGGCGGCGGGCGGGGAAGGGGACGCAGCGCCCCCCCGGCCGGCG
GTCGTGGCGGCGGCGGCGGCCGCGGGAGCGGCGGATCTCACCACTCAGGA
GGGTGGGGCGGCGCCCCTGCTCCCAGCGGCGGCGGAGGCGGCGGCGGTGG
TGCTTGGAACGGCAGCAGCAGGTCAAGTTCAATCCCTCCTCAGGCCGCTA
ATGCGTCCACGGAGTCTAGCGGTGGCTGGGGGGCGTCGGCTAAGGCACCG
GCGGCCGGGAGCGCGTGGACCGGCGACGGTCCCGCCGCAGTAACTGAAGC
CGTCGCCGTAGATGCCGGCACCGATTCGTCCCCCCCCGCTGCCGCGGTGA
CGGCCGCGTCCGGAGGTGGAGGGTGGGCAGCAGCCGTAGGAGGCAGCGCG
CCGACCTCATCGCCGGGACCCTCTGCCACCGTCGCGGCGGCATCGGGCGG
CTCCTCCGGATGGAGCGGCGGGAGCGGAGCCGCTGATGCTGCCGGGTCTT
CCTCTTCTTCCCAGGCGCCAATGGCGCATAACGGTTGGTCGAGCAGCGCG
CAGGACCCCGTGGCTCCGGGGCCGGTGGGCAGCGGAAGCGGCTCACTCGG
AGGAGCAGCAGCAGGCGGCGCGGCGGCGGCGGGCGCCCCCCAGCCACCGC
CGCCAAAGGAGGAAGACGCGGCTGCCTGGGCGCAGTCTAACCTGCCAGCG
ACATCGGCGTGGAGCCGCGGCGCGGCCACGATCATCAACCCCAAGCCGAA
GCCGGTTCCAGTGGCGCCGGCGCCTGCGGCGCCTTCGGCACCGCCGGCGC
CCGCTGCCGCGCCCGCCGCTCAGCCCGCCGTCCAGCCCGCACCCGCGCCC
ACCGCCGCCGCTCACCCAACCCTTCCGGGCGTAGCGTCGCCCGGAGGGGA
AGCGGTGGCGGCGACGCCGCCGCAGACCCCCCGACCGCAGGGCTCCATGC
CTTCGGTGGCGGAAACGGCAGCGGCGGCGGCTTCGCCCTCGATTGGGTCC
CCCGCGGTGGCGGTTAGCTCGCCGTCGCCGGTGGCGCGTCCGGCGGTGTC
GGCGGCCGCTGTCGCTGTCACCGCGCCCGTGCAGGTGGCCAGCGACTCGG
CGGCGGTGGCGGCCGCTGCTGCGGTGGCGGCGGCGCCGTCGCCTGTGACG
GCGGCGGCGGTGACCCCGGCGACCGCGCCTGGCTCTCAGCTCCACCTTCA
GAAGGCGCAGGCGCAGGAGGCTTCGGCGGTGTCGAAGCCTACGGCGGCAA
CGGGCGCCTCTGCCCCGGGGGAGGGCCTGAAGATGGGCAAGTGGGGATTG
AGCGACACGATCGCCAACGACGAGTCATTCTTGAGCTTCGGCCAGCTGTC
GTTCGGCGTACCGGACGTTGGGGGTCCGGAAAGCCAGTCCCAGCAAACAT
CGACGTCAGTCGGGACGAGCGCTGGAAACGGGTGGGGCGCGACGTCGGGG
TCGGCTATGGGTTGGGGAACCAAGGACACGGCAACGTCCCCCGTGGAGAC
T
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