mRNA_Ecto-sp13_S_contig1023.256.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1023.256.1
Unique NamemRNA_Ecto-sp13_S_contig1023.256.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1023.256.1 vs. uniprot
Match: A0A6H5KKT3_9PHAE (U1-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKT3_9PHAE)

HSP 1 Score: 385 bits (988), Expect = 3.300e-131
Identity = 229/232 (98.71%), Postives = 229/232 (98.71%), Query Frame = 1 
Query:    1 MSKDLGYKQVKNVESRRTWDRDYYEAKAKERIEQGDDYQEKDEGGPARRSQKEEFQPAAAGAAGPAGSARAYLKTRERKVDLSSKLGKTQVVTAASTPSQQGGWYCEICKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVSQVKDRLKMHKQREEDRISGALKKPSAEDEFDTRVREAEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQDPEMAAMMGFGGFGGRSKK 696
            MSKDLGYKQVKNVESRRTWDRDYYEAKAKERIEQGDDYQEKDEG PARRSQKEEFQPAA GAAGPAGSARAYLKTRERKVDLSSKLGKTQVVTAASTPSQQGGWYCEICKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVSQVKDRLKMHKQREEDRISGALKKPSAEDEFDTRVREAEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQDPEMAAMMGFGGFGG SKK
Sbjct:    1 MSKDLGYKQVKNVESRRTWDRDYYEAKAKERIEQGDDYQEKDEGAPARRSQKEEFQPAAPGAAGPAGSARAYLKTRERKVDLSSKLGKTQVVTAASTPSQQGGWYCEICKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVSQVKDRLKMHKQREEDRISGALKKPSAEDEFDTRVREAEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQDPEMAAMMGFGGFGGGSKK 232
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1023.256.1 vs. uniprot
Match: A0A835ZCC8_9STRA (U1-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCC8_9STRA)

HSP 1 Score: 181 bits (460), Expect = 1.570e-51
Identity = 107/181 (59.12%), Postives = 130/181 (71.82%), Query Frame = 1 
Query:    4 SKDLGYKQVKNVESRRTWDRDYYEAKAKERIEQGDDYQEKDEGGPARRSQKEEFQPAAAGAAGPAGSARAYLKTRERKVDLSSKLGKTQVVTAASTPSQQGGWYCEICKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVSQVKDRLKMHKQREED--RISGALKKPSAEDEFDTRVRE 540
            S DLG KQV NV  RR+WD + YE KAKER+E+GD+ +E           KEEFQPA  GA GPAGS RAYLK R  KVDL S+L KTQV+T+A+  S QGG++CE+CKC LKDSI YLDHINGKKHQR LG+SMRVERS+V  VK++L   + R ED  + SGA +K SA  E++ R+ E
Sbjct:    7 SDDLGDKQVSNV-VRRSWDVELYEKKAKERLERGDEVEEARPASSKAALNKEEFQPAPDGAQGPAGSRRAYLKARTEKVDLESRLHKTQVITSAAASSSQGGYWCEVCKCLLKDSIAYLDHINGKKHQRALGFSMRVERSSVGSVKEKLDKLRARAEDAAKASGAPRK-SAVQEYEERLAE 185
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1023.256.1 vs. uniprot
Match: A0A7S2WR40_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WR40_9STRA)

HSP 1 Score: 163 bits (412), Expect = 1.600e-44
Identity = 122/218 (55.96%), Postives = 156/218 (71.56%), Query Frame = 1 
Query:   46 RRTWDRDYYEAKAKERI--EQGDDYQEKDEGGPARRSQKEEFQPAAAGAAGPAGSARAYLKTRERKVDLSSKLGKTQVVTAASTPSQQGGWYCEICKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVSQVKDRLKMHKQREEDRISGALKKPSAEDEFDTRVREAEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQDPEMAAMMGFGGFGGRSK 693
            RRTWD   YE KA+ER+  E+G   +   +  P R   ++EF+ A   AAGPAGSARA+L  R R + L    GKTQ++       + GGWYC++C+C LKDS NYLDHINGKKHQR+LG+SMRVERSTV QV +R K+ K+R+ED +S A + P+A + ++ R+  A++ EXXXXXXXXXXXXXXXXXXXXXX  ME  DP++ A MGFGGFGG +K
Sbjct:   13 RRTWDVKEYEKKAQERLAREEGGIVEGDVDDRPVR--DRDEFRRAEDQAAGPAGSARAFLNNRNRALGLEKAAGKTQIIADNGLRQKGGGWYCDVCECLLKDSSNYLDHINGKKHQRKLGFSMRVERSTVGQVSERFKLAKKRKEDEMSVATR-PTAIEAYEQRIAAAQEEEXXXXXXXXXXXXXXXXXXXXXX--MEGMDPDLMAAMGFGGFGGGAK 225
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1023.256.1 vs. uniprot
Match: W7U2Z2_9STRA (Zinc finger matrin-type protein 2 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U2Z2_9STRA)

HSP 1 Score: 157 bits (397), Expect = 3.100e-42
Identity = 105/225 (46.67%), Postives = 134/225 (59.56%), Query Frame = 1 
Query:   34 NVESRRTWDRDYYEAKAKERIEQ---GDDYQEKDEGGPARRSQKEEFQPAAAGAAGPAGSARAYLKTRERKVDLSSKLGKTQVVTAASTPSQQGGWYCEICKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVSQVKDRLKMHKQREEDRISGALKKPSAEDEFDTRVREAEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQ-------DPEMAAMMGFGGF 678
            NVE RRTWD +++E  AKER+E+   GD  ++K    P    ++EEFQ A AGAAGP GS RAYLK RE  + L  K+GK QVVT +S P QQGG++C+IC+C LKDS+ YLDHINGKKHQ+ LGYSMRVER  V +VK+RL   K+RE+++     +    E   D   ++ E +E                         E         DPEMAA+MGFGGF
Sbjct:   17 NVE-RRTWDLEHFEKIAKERLEKEASGDVEKKK----PGFVRKREEFQAAEAGAAGPEGSKRAYLKHREADLGLEEKVGKIQVVTGSSAPHQQGGYWCDICQCLLKDSMAYLDHINGKKHQKALGYSMRVERVGVDRVKERLNALKRREDEKKKAGPR----ESAIDAYQKKLEKDEAIKAQWKEARKEARINVIQRATKEEESTVEEEGGVDPEMAALMGFGGF 232
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1023.256.1 vs. uniprot
Match: W2PLF3_PHYPN (U1-type domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=W2PLF3_PHYPN)

HSP 1 Score: 153 bits (386), Expect = 1.650e-40
Identity = 124/236 (52.54%), Postives = 154/236 (65.25%), Query Frame = 1 
Query:   28 VKNVESRRTWDRDYYEAKAKERIEQGDDYQEKDEGGPARRSQKEEFQPAAAGAAGPAGSARAYLKTRERKVDLSSKLGKTQVVTAASTPSQQGGWYCEICKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVSQVKDRLKMHKQREEDRISGALKKPSAEDEFDTRVREAEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQ--------------DPEMAAMMGFGGFGGRSK 693
            V NV +R+TWDR +YE  A+ R E      EK+E     +S KEEFQ A  GAAGPAGSARA+LK R  K+ L S +G  +VV +    S+ GG+YCE+C+CGLKDS+ YLDHINGKKH R+LGYSMRVERSTV QVK+RL+   +R+ D +    KK  A ++++ +++ AE+  XXXXXXXXXXXXXXXXXXX                       D EM AMMGFGGFGG  K
Sbjct:   13 VANV-TRQTWDRAHYEKLAQLRAE---GKLEKEETKKVIKSTKEEFQAANEGAAGPAGSARAFLKARTNKMSLESSVGTVKVVKSDDV-SKNGGYYCEVCECGLKDSVAYLDHINGKKHLRKLGYSMRVERSTVDQVKNRLQSASKRKWDPLMA--KKLDAMEDYEKKLKAAEEEXXXXXXXXXXXXXXXXXXXXALEQDKSDDADKKPEAADEALDADAEMMAMMGFGGFGGSKK 241
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1023.256.1 vs. uniprot
Match: A0A8J5JCN4_9STRA (zf-C2H2_jaz domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5JCN4_9STRA)

HSP 1 Score: 150 bits (380), Expect = 7.800e-40
Identity = 112/226 (49.56%), Postives = 138/226 (61.06%), Query Frame = 1 
Query:   28 VKNVESRRTWDRDYYEAKAKERIEQGDDYQEKDEGGPARRSQKEEFQPAAAGAAGPAGSARAYLKTRERKVDLSSKLGKTQVVTAASTPSQQGGWYCEICKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVSQVKDRLKMHKQREEDRISGALKKPSAEDEFDTRVREAEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQ----DPEMAAMMGFGGFGGRSK 693
            V NV +R+TWDR +YE  A+ R E      EK+E   A +S KEEFQ A  GAAGPAGSARA+LK R  K+ L + +G  +VV +    S+ GG+YCE+C+CGLKDS+ YLDHINGKKH R+LGYSMRVERSTV QVK+RL+ ++           KK  A +E + RV+      XXXXXXXX                   +    D EM AMMGFGGFGG  K
Sbjct:   16 VANV-ARQTWDRAHYEKLAQLRAE---GQLEKEETKKAIKSSKEEFQSANEGAAGPAGSARAFLKARTAKMSLETSVGTVKVVKSEDL-SKNGGYYCEVCECGLKDSVAYLDHINGKKHLRKLGYSMRVERSTVDQVKNRLQNYE-----------KKLKAAEEEEARVKXXXXXXXXXXXXXXDTLDQDKNDDADKKPEAADEVPDADAEMMAMMGFGGFGGSKK 225
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1023.256.1 vs. uniprot
Match: A0A3R7GK79_9STRA (U1-type domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GK79_9STRA)

HSP 1 Score: 150 bits (380), Expect = 1.330e-39
Identity = 112/238 (47.06%), Postives = 143/238 (60.08%), Query Frame = 1 
Query:   28 VKNVESRRTWDRDYYEAKAKERIEQGDDYQEKDEGGPARRSQKEEFQPAAAGAAGPAGSARAYLKTRERKVDLSSKLGKTQVVTAASTPSQQGGWYCEICKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVSQVKDRLKMHKQREEDRISGALKKPSAEDEFDTRVREAEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQ----------------DPEMAAMMGFGGFGGRSK 693
            V NV +R+TWDR++YE  AK R E      E++E     +S KEEFQ A   AAGPAGSARA+LK R  K+ L + +G  +VV +    S+ GG+YCE+C+CGLKDS+ YLDHINGKKH R+LGYSMRVERSTV QVK RL+   +R+ D +    KK     +++ +V+EAE+ E       XXXXXXXX            +                D EM +MMGFGGFGG  K
Sbjct:   13 VANV-ARQTWDREHYEKLAKLRAE---GQLEQEETKKVIKSSKEEFQAADDRAAGPAGSARAFLKARTSKMSLENSVGTVKVVKSDDL-SKNGGYYCEVCECGLKDSVAYLDHINGKKHLRKLGYSMRVERSTVDQVKSRLQSASKRKWDPLM--TKKLDTMADYEKKVKEAEEEEARIKRQKXXXXXXXXLGDQQTSEVKSEKATDKKPEAEDEAVPDADTEMMSMMGFGGFGGSKK 243
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1023.256.1 vs. uniprot
Match: A0A0P1ATE8_PLAHL (Zinc finger matrin-type protein 2 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ATE8_PLAHL)

HSP 1 Score: 150 bits (378), Expect = 8.990e-39
Identity = 104/232 (44.83%), Postives = 132/232 (56.90%), Query Frame = 1 
Query:   28 VKNVESRRTWDRDYYEAKAKERIEQGDDYQEKDEGGPARRSQKEEFQPAAAGAAGPAGSARAYLKTRERKVDLSSKLGKTQVVTAASTPSQQGGWYCEICKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVSQVKDRLKMHKQREEDRISGALKKPSAEDEFDTRVREAEDNEXXXXXXXXXXXXXXXXXXXXXXXX----------MEFQDPEMAAMMGFGGFGGRSK 693
            V NV  R+TWDR +YE  A+ R E G    EK+       S KEEFQ A   AAGPAGSARA+LK R  K+ L + +G  +VV +    S+  G+YCE+C+C LKDS+ YLDHINGKKH R+LGYSMRVERSTV QVKDRL+   +R+ D +    KK  A +E++ +++ AE+ E                                  +   D EM AMMGFGGFGG  K
Sbjct:   66 VSNV-VRQTWDRAHYEKLAQLRAEGG---VEKETTKKVIHSSKEEFQTADESAAGPAGSARAFLKARTAKMSLETSVGTVKVVKSDEL-SKNSGYYCEVCECSLKDSVAYLDHINGKKHLRKLGYSMRVERSTVDQVKDRLQSAAKRKWDPLM--TKKLDAMEEYEKKLKAAEEAEICLKRQKKEQRKAKKCESEDLSQDRVTAEETVDVVSESDAEMMAMMGFGGFGGSKK 290
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1023.256.1 vs. uniprot
Match: A0A3M6VG09_9STRA (U1-type domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VG09_9STRA)

HSP 1 Score: 144 bits (364), Expect = 3.070e-37
Identity = 112/240 (46.67%), Postives = 147/240 (61.25%), Query Frame = 1 
Query:   28 VKNVESRRTWDRDYYEAKAKERIE-QGDDYQEKDEGGPARRSQKEEFQPAAAGAAGPAGSARAYLKTRERKVDLSSKLGKTQVVTAASTPSQQGGWYCEICKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVSQVKDRLKMHKQREEDRISGALKKPSAEDEFDTRVREAEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQ-----------------DPEMAAMMGFGGFGGRSK 693
            V NV +R+TWDR++YE  A+ R   Q +  Q K        S KEEFQ A  GAAGPAGSARA+LK R  K+ L + +G  +VV +    S+ GG+YCE+C+CGLKDS+ YLDHINGKKH R+LG+SMRVERSTV QVK+RL+   +R+ D I+   KK    ++++ +++  ++ E   XXXXXXXXXXX          M+                   + EM AMMGFGGFGG  K
Sbjct:   14 VANV-ARQTWDREHYEKLAELRANGQFETTQTKK----VIASSKEEFQTANEGAAGPAGSARAFLKARSAKIALENSVGTIKVVKSDEI-SKHGGYYCEVCECGLKDSVAYLDHINGKKHLRKLGFSMRVERSTVDQVKNRLQSASKRKYDFIT--TKKLDTMEDYEKKLKAIKEEEAQAXXXXXXXXXXXKLGKQVSDLVMKHHNVVETISDADDKVPDDTEAEMMAMMGFGGFGGSKK 245
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1023.256.1 vs. uniprot
Match: A0A6A3XVT7_9STRA (U1-type domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3XVT7_9STRA)

HSP 1 Score: 143 bits (361), Expect = 8.880e-37
Identity = 84/150 (56.00%), Postives = 107/150 (71.33%), Query Frame = 1 
Query:   28 VKNVESRRTWDRDYYEAKAKERIEQGDDYQEKDEGGPARRSQKEEFQPAAAGAAGPAGSARAYLKTRERKVDLSSKLGKTQVVTAASTPSQQGGWYCEICKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVSQVKDRLKMHKQREED 477
            V NV +R+TWDR++YE  A+ R    D   EK+E      S K+EFQ A  GAAGPAGSARA+LK R  K++L + +G  +VV +    S+ GG+YCE+C+CGLKDS+ YLDHINGKKH R+LGYSMRVERSTV QVK RL+   +R+ D
Sbjct:   13 VANV-TRQTWDREHYEKLAQLRA---DGQLEKEEAKKVINSSKQEFQAANEGAAGPAGSARAFLKARTSKMELETSVGTIKVVKSDDA-SKSGGYYCEVCECGLKDSVAYLDHINGKKHLRKLGYSMRVERSTVDQVKSRLQSASKRKWD 157
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1023.256.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKT3_9PHAE3.300e-13198.71U1-type domain-containing protein n=2 Tax=Ectocarp... [more]
A0A835ZCC8_9STRA1.570e-5159.12U1-type domain-containing protein n=1 Tax=Tribonem... [more]
A0A7S2WR40_9STRA1.600e-4455.96Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
W7U2Z2_9STRA3.100e-4246.67Zinc finger matrin-type protein 2 n=1 Tax=Nannochl... [more]
W2PLF3_PHYPN1.650e-4052.54U1-type domain-containing protein n=11 Tax=Phytoph... [more]
A0A8J5JCN4_9STRA7.800e-4049.56zf-C2H2_jaz domain-containing protein n=1 Tax=Phyt... [more]
A0A3R7GK79_9STRA1.330e-3947.06U1-type domain-containing protein n=3 Tax=Phytopht... [more]
A0A0P1ATE8_PLAHL8.990e-3944.83Zinc finger matrin-type protein 2 n=1 Tax=Plasmopa... [more]
A0A3M6VG09_9STRA3.070e-3746.67U1-type domain-containing protein n=1 Tax=Peronosp... [more]
A0A6A3XVT7_9STRA8.880e-3756.00U1-type domain-containing protein n=2 Tax=Phytopht... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1023contigEcto-sp13_S_contig1023:7050..10505 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score388.7
Seed ortholog evalue2e-105
Seed eggNOG ortholog2880.D8LQ99
Preferred nameSNU23
Model size1194
KEGG koko:K12848
KEGG Pathwayko03040,map03040
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0030532,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0046540,GO:0071704,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:1901360,GO:1901363,GO:1990904
Exons4
EggNOG free text desc.mRNA splicing, via spliceosome
EggNOG OGsKOG4727@1,KOG4727@2759
Ec32 ortholog descriptionConserved C2H2 zinc finger protein
Ec32 orthologEc-26_005600.1
Cds size699
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462517.2909584-CDS-Ecto-sp13_S_contig1023:7049..72711681462517.2909584-CDS-Ecto-sp13_S_contig1023:7049..7271Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1023 7050..7271 +
1681462517.3019614-CDS-Ecto-sp13_S_contig1023:7964..81771681462517.3019614-CDS-Ecto-sp13_S_contig1023:7964..8177Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1023 7965..8177 +
1681462517.3109162-CDS-Ecto-sp13_S_contig1023:9070..91811681462517.3109162-CDS-Ecto-sp13_S_contig1023:9070..9181Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1023 9071..9181 +
1681462517.3202527-CDS-Ecto-sp13_S_contig1023:9857..100101681462517.3202527-CDS-Ecto-sp13_S_contig1023:9857..10010Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1023 9858..10010 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462517.330408-UTR-Ecto-sp13_S_contig1023:10010..105051681462517.330408-UTR-Ecto-sp13_S_contig1023:10010..10505Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1023 10011..10505 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1023.256.1prot_Ecto-sp13_S_contig1023.256.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1023 7050..10010 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1023.256.1

>prot_Ecto-sp13_S_contig1023.256.1 ID=prot_Ecto-sp13_S_contig1023.256.1|Name=mRNA_Ecto-sp13_S_contig1023.256.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=233bp
MSKDLGYKQVKNVESRRTWDRDYYEAKAKERIEQGDDYQEKDEGGPARRS
QKEEFQPAAAGAAGPAGSARAYLKTRERKVDLSSKLGKTQVVTAASTPSQ
QGGWYCEICKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVSQVKDRL
KMHKQREEDRISGALKKPSAEDEFDTRVREAEDNEERRKRQKREAKRLAK
KKQQEEEEEMEFQDPEMAAMMGFGGFGGRSKK*
back to top

mRNA from alignment at Ecto-sp13_S_contig1023:7050..10505+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1023.256.1 ID=mRNA_Ecto-sp13_S_contig1023.256.1|Name=mRNA_Ecto-sp13_S_contig1023.256.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3456bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1023:7050..10505+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGAAAGACCTGGGCTACAAGCAAGTCAAGAACGTGGAGTCGAGGCG
GACATGGGATCGCGACTACTACGAGGCTAAGGCAAAGGAGAGGATAGAGC
AGGGCGACGACTACCAGGAAAAGGACGAAGGGGGACCTGCAAGGAGAAGC
CAAAAGGAGGAATTCCAGCCGGCGGCCGCGGGGGCGGCGGGGCCAGCAGG
CTCAGCGCGGGCTTACCTCAAGGTACTGCTTGGTAACACTCCAGGTCTTC
GCGTGTACCAATGCAGCTTTCTTTGCGTTCACCGTTGCCTGGCAGGCAGT
TCCTAGGTCGTGCCCAGACTTCCAATCTCAGCGTTATTGATGGGCGGTGT
GAAAAAAGTAATTGGTGATTCGCTCTCCGAGACTCCGCTTCTGAAACACT
ATCTACAATACCAGATACCAGCAGTGTATCGGCTGCAAGTGTGATGCGGT
GAAACTGATCATCTGCACAGCGTCAGTGATCTCTGGGCCAACACGATAGC
ATGGTCCGGCGTTCAGTCTTCGCTACTCCACCAAAATTTTCCTGGAGTTG
CGTGCTGGTGGGGAAGGAGCTGACAAGCAGATTATCCTACTTCTTGTTTA
GTTGGGCTGCCGACCCCGTTGGTTTTACGGAGGACGTGTTACTCAGGAAG
GTAAGGAGTCCCTAACCTGAACTTCTACGTCACTCTGCCGGTTTGGCACA
TTACCCCGCGTTGGGCACCGAAGACGTGTTTTCAAAGCCCGTATGCATAA
GCGTAAGCAAGTTTTCCTCGTCGAAGGGCCCCGACTACTGCTGTTGTTCA
AACATCGCGCTGCATATACGATTACTTTGCGTTGAGGCAAAGACGCCCCA
GGTAAGTAGAGCCTTGACCTTCCGCGTCCTTCCTACCCTTTCCTCCGACC
GACCGCATGCCACAGACCCGAGAGAGGAAGGTCGACCTCTCCTCCAAGCT
CGGAAAGACGCAGGTAGTCACCGCGGCGTCCACGCCGTCCCAGCAGGGAG
GCTGGTACTGCGAGATCTGCAAGTGTGGGCTCAAGGATAGCATCAACTAC
CTGGACCATATCAACGGCAAGAAGCACCAGAGGGAGCTGGGCTACAGCAT
GCGGGTAGAGAGGTCCACCGTCTCGCAGGTGGGTGGGGCGCGAACAGTTT
GCTTGGCGAAATCGTGGTAGTATATGGTCACACGTCGCCCACAACACTTC
GTCTGGGCCTGGTCTCAATTGCTCAACAGCAGGTACTGTAAAGGTTAGAA
TCTGGGTAGCACGTCAAGACCCATAGCCGCGAAGAAACGCTGAATGTACG
GTAGGATTTGCGACTACGATCCATGTCGCGGCCACTTTTTTCAAGACTGC
TGTGTGGGGCGTCAGGGTGTCCTTGGCTCACGTATGACTGGTCCTCATGA
TCAATAGGTTTCCCGTTGTCTTGGTCAAGTTGTCGTAGATGCTGTTGCGG
AGACCGACGTGGTGTTGGATGTGTGCTGTTGTCCCCAAGTACACAAAACT
TTCATGTGTATTTCTTGCTGTGACGATGGTTGACCACCTCCGTACGAGCG
CAGCAGTGGTTTGTTGGATCTACGGTTGCTGTAATGTAGTCAACCTGTTT
TATATTGGAAATAGGACGGGGATACGACCGCCTAATTACTTGGAGATGAA
TCTTTCTCTTTGAATTGGCCCGTGGCAGGAAGAGTAAAAAGACAACCCAA
CAATGACATTGATCGTTTTTTTCCGAACTCAAAACTGCACTTCAAGGTGT
CTTGTATTCCTCGCAACGTAATTGTGTGCAGAACGAACCGTGACACTTTG
TACTGATCCGCAAGCCCGACTGAACGCGCTGAATCGTAACTCCGCATCTC
CTGTTGTCCTCCCCGCTTGAAACGAGCAAAACATATATACCGCCTACATC
GACTAAGCAATCCCTGTACACACAAGGACATGCTCCTTTTGCTCTTGTTC
GTTCAACGGCGTCATCCCTCGGTTACTCCACTCCTACGACTTACGGACCC
ACCCCCTTTTTTCCACGGCAGGTCAAGGACCGGCTGAAGATGCACAAACA
GAGGGAAGAGGATCGGATTTCGGGGGCTTTGAAGAAGCCATCCGCAGAAG
ACGAGTTTGACACTAGGGTGCGGGAGGCAGAGGTAAGCGGGACCATGCTA
CTTCCCCAACCGTCGTGGGTGGTTGAGGCATCGGCCCGTGACCTTTTCTG
TGTCGATGCCTTGCTTTCGTAGGCGTCTAACGAGCCGCTTGTGAATTTCA
CGACCCACTTTTTCTCCATCTCACGATAGCTCTTGGGAAGAGGTAGGTCG
GACGCATTTGCGCGGATTGAAGAGTTTTTTTCTGGTGCTCGTGCTCTGTC
GGTAGCTCAAAGCTCGGGGCGCGTACCGCCCGTGGTATTATGTGCGCATA
TAAGAAGGCACTCCTTGTGAACTTGTGAAGTCGTACGCAGGTCGGTCACT
GTGGAGGAGAACCGCAGCTGTGTACCTAGAGATTAGCGAGGTGCTGCCTA
CGCCGCCAAGCGCTTGCGCCATTCATTGAGTTGGTGCACACGAAAGCAGG
GAGTACGCGAAAGGTAGCCGCTATTCACATGCTGTACACTCGAAGCGTCA
CCCTCGTGACGGCCGGGCCACATGCCTTGTAGCTCTTGACCTGAAAACGA
AAGAGAGCCATCGCCGGAATTCTCGTCACCATACACACAAATGGGCATGC
TTAGTGAGCTACAGAAACATTGAAATTCTGTTGGGCAGCTGTTGCAGAGT
CCCCCTTCCGCTCTCTTCTCACCCATGACCCCCCTCCATACCTCTCCTGA
TCCTTAAGGACAACGAAGAGCGACGAAAGCGACAAAAGAGGGAGGCGAAA
CGGCTGGCGAAAAAGAAGCAACAGGAGGAGGAGGAGGAGATGGAGTTCCA
GGACCCCGAAATGGCGGCGATGATGGGCTTTGGAGGCTTCGGGGGGAGGA
GCAAGAAGTAGTAGACACATCGATGCGGTACATCTCTCTGCGGCAATTGG
AGCCGCGAGGGCACGAAATATCGTTTCCGCAAAAGTAATCAATCTCATGG
CAGCTTACCAGTGTTTTCACACGACCAAATGCCATGGATGGTGACATGGT
AGTGCTTGTGATATGATGTGTATCATCGAGTGGTGCTCAGCATGATTAAT
ATCACATGATGCCTTGCTACTTGGTTATTGGCACTGTAGTTAACCTGCTT
TTAATTTGTTGTTTAGAAGGGAAGACGAGGACGGTGCGCCGCGCGCGCCG
CCGTATAGTCTATGCACGATTGCTCTTTTTGCTTTGTTTGATCTACTGTC
GAGATCGTGTAATCACCTCCGTGAAGGCAAGATTGGAAGCAGGGCCAATT
CTTGGAGCGGGTGTTCCAACCAATTAGTTGCCCTTTTGTCGGCTGGCAAG
ATAGGCTATGGTTTCGAACCCTTACGAAATTGGTGGCGAGCGCCGGCTGA
GATGTC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1023:7050..10505+

>mRNA_Ecto-sp13_S_contig1023.256.1 ID=mRNA_Ecto-sp13_S_contig1023.256.1|Name=mRNA_Ecto-sp13_S_contig1023.256.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=699bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1023:7050..10505+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGAAAGACCTGGGCTACAAGCAAGTCAAGAACGTGGAGTCGAGGCG
GACATGGGATCGCGACTACTACGAGGCTAAGGCAAAGGAGAGGATAGAGC
AGGGCGACGACTACCAGGAAAAGGACGAAGGGGGACCTGCAAGGAGAAGC
CAAAAGGAGGAATTCCAGCCGGCGGCCGCGGGGGCGGCGGGGCCAGCAGG
CTCAGCGCGGGCTTACCTCAAGACCCGAGAGAGGAAGGTCGACCTCTCCT
CCAAGCTCGGAAAGACGCAGGTAGTCACCGCGGCGTCCACGCCGTCCCAG
CAGGGAGGCTGGTACTGCGAGATCTGCAAGTGTGGGCTCAAGGATAGCAT
CAACTACCTGGACCATATCAACGGCAAGAAGCACCAGAGGGAGCTGGGCT
ACAGCATGCGGGTAGAGAGGTCCACCGTCTCGCAGGTCAAGGACCGGCTG
AAGATGCACAAACAGAGGGAAGAGGATCGGATTTCGGGGGCTTTGAAGAA
GCCATCCGCAGAAGACGAGTTTGACACTAGGGTGCGGGAGGCAGAGGACA
ACGAAGAGCGACGAAAGCGACAAAAGAGGGAGGCGAAACGGCTGGCGAAA
AAGAAGCAACAGGAGGAGGAGGAGGAGATGGAGTTCCAGGACCCCGAAAT
GGCGGCGATGATGGGCTTTGGAGGCTTCGGGGGGAGGAGCAAGAAGTAG
back to top