mRNA_Ecto-sp13_S_contig13143.2555.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13143.2555.1
Unique NamemRNA_Ecto-sp13_S_contig13143.2555.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13143.2555.1 vs. uniprot
Match: D8LT18_ECTSI (Valine--tRNA ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT18_ECTSI)

HSP 1 Score: 407 bits (1046), Expect = 1.460e-132
Identity = 203/213 (95.31%), Postives = 209/213 (98.12%), Query Frame = 1 
Query:    1 RFGDATQVAYSFWLYDLCDYYLELIKPVVGDTSEGNKETRSIAQSCLYLCLDYGLKLIHPIMPFVTEELWQRLPGRGSMGPQEAPSIMVAPYPQADERFANPAAETDMSAVKAAIHAGRSLRSSYGIVPSAKAEFYVKSSSEERHNVITKQASDFITLAKASTAVPIMNEEPPEGCAVHIIDDQSQVYVQLRGLVNFDVEIKKLQKQVTTYTE 639
            +FGDATQVAYSFWLYDLCDYYLELIKPVVGDTSEGNK+ RSIAQSCLYLCLDYGLKLIHPIMPFVTEELWQRLPGRGSMGP+EAPSIMVAPYPQADERFANPAAETDMSAVKAAIHAGRSLRSSYGIVPSAKAEFYVKSSSEERHNVITKQASDFITLAKASTAVPIMNEEPPEGCAVHIIDDQSQVYVQLRG+V+FDVEIKKLQKQ+ T  E
Sbjct:  807 KFGDATQVAYSFWLYDLCDYYLELIKPVVGDTSEGNKKARSIAQSCLYLCLDYGLKLIHPIMPFVTEELWQRLPGRGSMGPEEAPSIMVAPYPQADERFANPAAETDMSAVKAAIHAGRSLRSSYGIVPSAKAEFYVKSSSEERHNVITKQASDFITLAKASTAVPIMNEEPPEGCAVHIIDDQSQVYVQLRGMVDFDVEIKKLQKQLDTKIE 1019
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BLAST of mRNA_Ecto-sp13_S_contig13143.2555.1 vs. uniprot
Match: A0A6V1PAS2_HETAK (Valine--tRNA ligase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PAS2_HETAK)

HSP 1 Score: 236 bits (601), Expect = 2.280e-68
Identity = 119/209 (56.94%), Postives = 148/209 (70.81%), Query Frame = 1 
Query:    4 FGDATQVAYSFWLYDLCDYYLELIKPVVGDTSEGNKETRSIAQSCLYLCLDYGLKLIHPIMPFVTEELWQRLPGRGSMGPQEAPSIMVAPYPQADERFANPAAETDMSAVKAAIHAGRSLRSSYGIVPSAKAEFYVKSSSEERHNVITKQASDFITLAKAS--TAVPIMNEEPPEGCAVHIIDDQSQVYVQLRGLVNFDVEIKKLQKQV 624
            F D T   Y+FWLYDLCD YLELIKPVV D +E N+  R  AQ+ L++CL+ GL+L+HP+MPFVTEELWQRLPGRG +G  E PSIMVAPYP A   +ANPA E     +K AIHA RSLR+ YG+ P    +FYV   S E ++ I+ QASD  TLAKA+  T +P   +EPP GCAV+I  D  QV++ LRGLVNF+ E+ KL+ Q+
Sbjct:  826 FADLTTACYAFWLYDLCDNYLELIKPVVNDAAEANRAARQAAQATLFVCLETGLRLLHPVMPFVTEELWQRLPGRGQLGADEPPSIMVAPYPVARPAWANPALEASYEQIKEAIHACRSLRADYGLTPKQTPDFYVACGSSELYDAISLQASDIRTLAKANQVTVLPA-GQEPPAGCAVNIKSDTLQVHILLRGLVNFEEEVAKLEAQL 1033
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BLAST of mRNA_Ecto-sp13_S_contig13143.2555.1 vs. uniprot
Match: A0A835ZF04_9STRA (Valine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF04_9STRA)

HSP 1 Score: 227 bits (579), Expect = 2.340e-65
Identity = 119/210 (56.67%), Postives = 141/210 (67.14%), Query Frame = 1 
Query:    4 FGDATQVAYSFWLYDLCDYYLELIKPVVGDTSEGNKETRSIAQSCLYLCLDYGLKLIHPIMPFVTEELWQRLPGRGSMGPQEAPSIMVAPYPQADERFANPAAETDMSAVKAAIHAGRSLRSSYGIVPSAKAEFYVKSSSEERHNVITKQASDFITLAKASTA-VPIMNEEPPEGCAVHIIDDQSQVYVQLRGLVNFDVEIKKLQKQVTT 630
            FG  T   Y FWLY+LCD+YLELIKPVV D SE N E R IAQ CLYLCLD+GL+L+HPIMPFVTE+LWQRLPGRGSMG  E+ SIM+A YP+A     +P AE     VK AIH  RSLR++YG+ P                     QA DF TLAKA+   V + NEEPP GCAV I+D+   +YVQL+GLV+FD EI KL+ Q+ T
Sbjct:  830 FGGLTTCLYQFWLYELCDHYLELIKPVVNDKSEANAEARKIAQGCLYLCLDFGLRLLHPIMPFVTEDLWQRLPGRGSMGEGESVSIMLAKYPEAMPAMDDPEAERRYEMVKTAIHTARSLRATYGLTP---------------------QADDFSTLAKAADCGVLVGNEEPPAGCAVQIVDNTLSLYVQLKGLVDFDAEIAKLEGQLET 1018
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BLAST of mRNA_Ecto-sp13_S_contig13143.2555.1 vs. uniprot
Match: K3WUG3_GLOUD (Valine--tRNA ligase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WUG3_GLOUD)

HSP 1 Score: 209 bits (533), Expect = 1.310e-64
Identity = 107/209 (51.20%), Postives = 146/209 (69.86%), Query Frame = 1 
Query:    1 RFGDATQVAYSFWLYDLCDYYLELIKPV-VGDTSEGNKETRSIAQSCLYLCLDYGLKLIHPIMPFVTEELWQRLPGRGSMGPQEAPSIMVAPYPQADERFANPAAETDMSAVKAAIHAGRSLRSSYGIVPSAKAEFYVKSSSEERHNVITKQASDFITLAKASTAVPIMNEEPPEGCAVHIIDDQSQVYVQLRGLVNFDVEIKKLQKQV 624
             FGD T   Y+FWLYDLCD YLEL KPV  GD +E     ++ AQ  LY+CL+YGL+L+HP+MPFVTEELWQRLPG+ ++      SI +A YP A + ++NP AE +M  VK  IHA RS+R+ YG+V S + +FYVK S ++   VI  Q  DF TLAKA  +  ++ EEPP+GCA+H ++++ Q++V L GLV+F  EI KL+K++
Sbjct:   12 EFGDLTNALYNFWLYDLCDVYLELAKPVFAGDDAEA----KATAQQVLYICLEYGLRLLHPMMPFVTEELWQRLPGKHAVA-----SITIASYPLAVDGWSNPEAEANMELVKEVIHAARSVRAEYGLVNSVRPQFYVKCSDDDVKRVIDAQLDDFGTLAKAGESHVLVGEEPPKGCAMHSVNEKIQIHVLLAGLVDFANEIAKLEKKM 211
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BLAST of mRNA_Ecto-sp13_S_contig13143.2555.1 vs. uniprot
Match: A0A8K1CK90_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CK90_PYTOL)

HSP 1 Score: 216 bits (549), Expect = 3.070e-61
Identity = 107/208 (51.44%), Postives = 146/208 (70.19%), Query Frame = 1 
Query:    4 FGDATQVAYSFWLYDLCDYYLELIKPVVGDTSEGNKETRSIAQSCLYLCLDYGLKLIHPIMPFVTEELWQRLPGRGSMGPQEAPSIMVAPYPQADERFANPAAETDMSAVKAAIHAGRSLRSSYGIVPSAKAEFYVKSSSEERHNVITKQASDFITLAKASTAVPIMNEEPPEGCAVHIIDDQSQVYVQLRGLVNFDVEIKKLQKQVT 627
            FGD T   Y+FWLYDLCD YLEL KPV+G + E  K T   AQ  LY+CL++GL+L+HP+MPFVTEELWQRLPG+ S     APSI VA YP A + ++NP  E  M  +K  IHA RS+R+ YG+V S + +F++K +  E   +I  Q  DF TLAKA  +  +++EEPP+GCA+H ++++ Q++V L GLV+F  EI KL+K++T
Sbjct:  814 FGDLTTALYNFWLYDLCDVYLELAKPVMGGSDEKAKLT---AQQTLYICLEFGLRLLHPLMPFVTEELWQRLPGKRS-----APSITVAQYPLAVDGWSNPEVEAKMELIKEVIHAARSVRAEYGLVNSVRPQFFIKCADAEVQQIIDTQLDDFSTLAKAGESKTLLDEEPPKGCAIHSVNEKVQIHVLLAGLVDFANEISKLEKKLT 1013
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BLAST of mRNA_Ecto-sp13_S_contig13143.2555.1 vs. uniprot
Match: A0A662WQI8_9STRA (Valine--tRNA ligase (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WQI8_9STRA)

HSP 1 Score: 201 bits (512), Expect = 1.700e-60
Identity = 102/209 (48.80%), Postives = 140/209 (66.99%), Query Frame = 1 
Query:    1 RFGDATQVAYSFWLYDLCDYYLELIKPVVGDTSEGNKETRSIAQSCLYLCLDYGLKLIHPIMPFVTEELWQRLPGRGSMGPQEAPSIMVAPYPQADERFANPAAETDMSAVKAAIHAGRSLRSSYGIVPSAKAEFYVKSSSEERHNVITKQASDFITLAKASTAVPIMNEEPPEGCAVHIIDDQSQVYVQLRGLVNFDVEIKKLQKQVT 627
             FG+ T   Y+FWLYDLCD YLEL KPV+       K T   AQ  LY+CL++GL+L+HP MPFVTEELWQRLPG+ +       SI +APYP A   + NP AE +M  VK  IHA RS+R+ YG+  S + +F++K S  E   V+  Q  DF TLAKA  +  +++E+PP+GCA+H ++D+ Q++V L GLV+F  EI KL+K+++
Sbjct:   87 EFGELTNALYTFWLYDLCDVYLELTKPVMSGDDAAAKLT---AQQTLYVCLEFGLRLLHPTMPFVTEELWQRLPGKRATA-----SITIAPYPLAVAGWTNPEAEANMELVKEVIHAARSVRAEYGLANSVRPQFFLKCSDAEVRAVMEAQLDDFSTLAKAGDSRCVVDEQPPQGCAMHSVNDKVQLFVLLAGLVDFASEIAKLEKKLS 287
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BLAST of mRNA_Ecto-sp13_S_contig13143.2555.1 vs. uniprot
Match: UPI001EC3C07D (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=UPI001EC3C07D)

HSP 1 Score: 213 bits (541), Expect = 3.630e-60
Identity = 106/209 (50.72%), Postives = 144/209 (68.90%), Query Frame = 1 
Query:    1 RFGDATQVAYSFWLYDLCDYYLELIKPVVGDTSEGNKETRSIAQSCLYLCLDYGLKLIHPIMPFVTEELWQRLPGRGSMGPQEAPSIMVAPYPQADERFANPAAETDMSAVKAAIHAGRSLRSSYGIVPSAKAEFYVKSSSEERHNVITKQASDFITLAKASTAVPIMNEEPPEGCAVHIIDDQSQVYVQLRGLVNFDVEIKKLQKQVT 627
             FG+ T   Y+FWLYDLCD YLEL+KPV+G   E   E +  AQ  LY+CL++GL+L+HP MPFVTEELWQRLPG+ S       SI +APYP   E ++NP  ET+M  VK  IHA RS+R+ YG+  S + +F++K S +E   V+  Q  DF TLAKA  +  I++EE P+GCA+H ++D+ Q++V L GLV+F  EI KL+K++T
Sbjct:  797 EFGELTNALYTFWLYDLCDVYLELLKPVIGGDDE---EAKLTAQQTLYICLEFGLRLLHPTMPFVTEELWQRLPGKRSTA-----SITIAPYPLPMEGWSNPEVETNMELVKDVIHAARSVRAEYGLANSVRPQFFIKCSDDEVKAVMEAQLDDFSTLAKAGDSKCIVSEEAPQGCAMHSVNDKVQIFVLLAGLVDFANEISKLEKKLT 997
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BLAST of mRNA_Ecto-sp13_S_contig13143.2555.1 vs. uniprot
Match: A0A5D6Y5N2_9STRA (Valine--tRNA ligase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y5N2_9STRA)

HSP 1 Score: 212 bits (539), Expect = 7.300e-60
Identity = 108/207 (52.17%), Postives = 142/207 (68.60%), Query Frame = 1 
Query:    4 FGDATQVAYSFWLYDLCDYYLELIKPVVGDTSEGNKETRSIAQSCLYLCLDYGLKLIHPIMPFVTEELWQRLPGRGSMGPQEAPSIMVAPYPQADERFANPAAETDMSAVKAAIHAGRSLRSSYGIVPSAKAEFYVKSSSEERHNVITKQASDFITLAKASTAVPIMNEEPPEGCAVHIIDDQSQVYVQLRGLVNFDVEIKKLQKQV 624
            FG+ T V Y+FWLYDLCD YLEL KPV+      ++  +  AQ  LY+CL+YGL+L+HP+MPFVTEELWQRLPG      + A SI V  YPQ    + NPAAE DM  VK AIHA RS+R++YG+V S + EF++K S      V+  Q  DF TLAKA  A  +++ EPP+GCAVH ++++ Q+YVQL GLV+   EI KL+K++
Sbjct:  817 FGELTNVLYAFWLYDLCDVYLELTKPVLA-ADAADQAAKRTAQQTLYVCLEYGLRLLHPLMPFVTEELWQRLPGA-----RAAASITVVAYPQPVAAWRNPAAEADMELVKDAIHAARSVRAAYGLVNSVRPEFFIKCSDAAVERVVAAQLDDFCTLAKAGDARTLVDAEPPKGCAVHSVNEKLQLYVQLAGLVDAASEISKLEKKL 1017
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BLAST of mRNA_Ecto-sp13_S_contig13143.2555.1 vs. uniprot
Match: A0A7S1CWB1_CYCTE (Valine--tRNA ligase (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CWB1_CYCTE)

HSP 1 Score: 197 bits (502), Expect = 7.450e-58
Identity = 105/208 (50.48%), Postives = 134/208 (64.42%), Query Frame = 1 
Query:    1 RFGDATQVAYSFWLYDLCDYYLELIKPVVGDTSEGNKETRSIAQSCLYLCLDYGLKLIHPIMPFVTEELWQRLPGRGSMGPQEAPSIMVAPYPQADERFANPAAETDMSAVKAAIHAGRSLRSSYGIVPSAKAEFYVKSSSEERHNVITKQASDFITLAKASTAVPIMNEEPPEGCAVHIIDDQSQVYVQLRGLVNFDVEIKKLQKQV 624
            RFGDA   +YS W+ DLCD YLEL+KPVV DTSE NK++R  AQS L++ L+ GL+L+HP+MPFVTEELWQRLPGRG++G  E  SIM+APYP+  E + +  +E  M      I A RSLRSSY I      +FY+K  S E    I     D  TL KAS  V I     P+   + +ID+Q+ V + L GLV+F  EIKKL+K +
Sbjct:  187 RFGDAQNASYSLWINDLCDVYLELVKPVVYDTSEANKDSRLAAQSTLWVALEMGLRLLHPMMPFVTEELWQRLPGRGTLGEDEPQSIMLAPYPECIEAYKSRKSEDAMGVALKVIKACRSLRSSYNITNKVLTQFYLKVESAEDVTAIESHVDDVKTLGKAS-GVAINASNVPQSVGIVVIDNQTTVMMDLAGLVDFKAEIKKLEKSL 393
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BLAST of mRNA_Ecto-sp13_S_contig13143.2555.1 vs. uniprot
Match: A0A2P4YHM1_9STRA (Valine--tRNA ligase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YHM1_9STRA)

HSP 1 Score: 200 bits (509), Expect = 2.780e-57
Identity = 102/209 (48.80%), Postives = 139/209 (66.51%), Query Frame = 1 
Query:    1 RFGDATQVAYSFWLYDLCDYYLELIKPVVGDTSEGNKETRSIAQSCLYLCLDYGLKLIHPIMPFVTEELWQRLPGRGSMGPQEAPSIMVAPYPQADERFANPAAETDMSAVKAAIHAGRSLRSSYGIVPSAKAEFYVKSSSEERHNVITKQASDFITLAKASTAVPIMNEEPPEGCAVHIIDDQSQVYVQLRGLVNFDVEIKKLQKQVT 627
             FG+ T   Y+FWLYDLCD YLEL KPV+   S  + E +  AQ  LY+CL++GL+L+HP MPFVTEELWQRLPG+ S       SI +APYP   E + NP  E +M  VK  IHA RS+R+ YG+  + +  F++K S  +   V+  Q  DF TLAKA  +  I++EE P+GCA+H ++D+ Q++V L GLV+F  EI KL+K++T
Sbjct:  381 EFGELTNALYNFWLYDLCDVYLELTKPVI---SGEDAEAKLTAQQTLYVCLEFGLRLLHPTMPFVTEELWQRLPGKRSTA-----SITIAPYPLPMEGWTNPEIEANMELVKEVIHAARSVRAEYGLANNVRPNFFIKCSDNDVKAVMEAQLDDFNTLAKAGDSKCIVDEEAPQGCAMHSVNDKVQIFVLLAGLVDFANEIAKLEKKLT 581
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13143.2555.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LT18_ECTSI1.460e-13295.31Valine--tRNA ligase n=1 Tax=Ectocarpus siliculosus... [more]
A0A6V1PAS2_HETAK2.280e-6856.94Valine--tRNA ligase n=1 Tax=Heterosigma akashiwo T... [more]
A0A835ZF04_9STRA2.340e-6556.67Valine--tRNA ligase n=1 Tax=Tribonema minus TaxID=... [more]
K3WUG3_GLOUD1.310e-6451.20Valine--tRNA ligase n=1 Tax=Globisporangium ultimu... [more]
A0A8K1CK90_PYTOL3.070e-6151.44Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A662WQI8_9STRA1.700e-6048.80Valine--tRNA ligase (Fragment) n=1 Tax=Nothophytop... [more]
UPI001EC3C07D3.630e-6050.72Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]
A0A5D6Y5N2_9STRA7.300e-6052.17Valine--tRNA ligase n=1 Tax=Pythium brassicum TaxI... [more]
A0A7S1CWB1_CYCTE7.450e-5850.48Valine--tRNA ligase (Fragment) n=1 Tax=Cyclophora ... [more]
A0A2P4YHM1_9STRA2.780e-5748.80Valine--tRNA ligase n=1 Tax=Phytophthora palmivora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13143contigEcto-sp13_S_contig13143:427..4792 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score412.1
Seed ortholog evalue1.5e-112
Seed eggNOG ortholog2880.D8LT18
Model size639
KEGG rclassRC00055,RC00523
KEGG koko:K01873
KEGG ReactionR03665
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004812,GO:0004832,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006438,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0022414,GO:0032501,GO:0032502,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0061458,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576
Exons6
EggNOG free text desc.valyl-tRNA aminoacylation
EggNOG OGsCOG0525@1,KOG0432@2759
Ec32 ortholog descriptionValine--tRNA ligase,
Ec32 orthologEc-08_004480.1
EC6.1.1.9
Cds size639
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13143.2555.1prot_Ecto-sp13_S_contig13143.2555.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13143 427..4792 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462703.6889925-CDS-Ecto-sp13_S_contig13143:426..5401681462703.6889925-CDS-Ecto-sp13_S_contig13143:426..540Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13143 427..540 +
1681462703.7047083-CDS-Ecto-sp13_S_contig13143:1226..13501681462703.7047083-CDS-Ecto-sp13_S_contig13143:1226..1350Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13143 1227..1350 +
1681462703.7164378-CDS-Ecto-sp13_S_contig13143:1800..19521681462703.7164378-CDS-Ecto-sp13_S_contig13143:1800..1952Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13143 1801..1952 +
1681462703.7244327-CDS-Ecto-sp13_S_contig13143:3572..36351681462703.7244327-CDS-Ecto-sp13_S_contig13143:3572..3635Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13143 3573..3635 +
1681462703.7326434-CDS-Ecto-sp13_S_contig13143:4184..42891681462703.7326434-CDS-Ecto-sp13_S_contig13143:4184..4289Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13143 4185..4289 +
1681462703.7425828-CDS-Ecto-sp13_S_contig13143:4711..47921681462703.7425828-CDS-Ecto-sp13_S_contig13143:4711..4792Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13143 4712..4792 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13143.2555.1

>prot_Ecto-sp13_S_contig13143.2555.1 ID=prot_Ecto-sp13_S_contig13143.2555.1|Name=mRNA_Ecto-sp13_S_contig13143.2555.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=213bp
RFGDATQVAYSFWLYDLCDYYLELIKPVVGDTSEGNKETRSIAQSCLYLC
LDYGLKLIHPIMPFVTEELWQRLPGRGSMGPQEAPSIMVAPYPQADERFA
NPAAETDMSAVKAAIHAGRSLRSSYGIVPSAKAEFYVKSSSEERHNVITK
QASDFITLAKASTAVPIMNEEPPEGCAVHIIDDQSQVYVQLRGLVNFDVE
IKKLQKQVTTYTE
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mRNA from alignment at Ecto-sp13_S_contig13143:427..4792+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13143.2555.1 ID=mRNA_Ecto-sp13_S_contig13143.2555.1|Name=mRNA_Ecto-sp13_S_contig13143.2555.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4366bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13143:427..4792+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTTTGGCGACGCTACCCAGGTGGCGTACTCGTTCTGGCTGTACGACCT
TTGCGACTACTACCTCGAGCTCATCAAGCCCGTCGTCGGCGACACGAGCG
AAGGAAACAAAGAGGTGAAAGACAGAGAGAGAACACGATCTAGTCGGTCG
CCTCTTGGAGAACGCCTGCCGTCTTCGGCTTGCTGATGTCGAAACCCTCT
TGTCTTCGACTAGACGAAAAACCGCGGGTCAGCGGGTGTGCTCGGTACGG
AGAAAGCGACATACTTCATCTTCATGGTTTGGTTGTGTTTTTGTCGATAA
TGTGTGTGTTCAAACCTTTTGGTTGCTGTCGTCCAAAGTTTAATGGGCAT
ACATCCGGTGGGATTTTAGTGGTATCGTTTTCCTGCGACTTCCCTTGACT
TTCTCGATGTTGATTGGCAGCGATGTCATTGGCGAGTACAAGGCCGTACT
CAGCATGCGCACCCACGCCCTTGGCTTCCGGTATTAGGGTGGTGGGGTGT
AGGGAAGGAGGCCTGAAACTGCCGAAGAGCCTGGTGGACATCGATGACAT
CACGCTAACGAGGTTTTCAGCTTTGGATAAGCGTGGCTCGGGCCTACTCG
ACCAGCGTTCAGGCACTACGCGCGCGCGCGTGTGCGCTGTCAGCATTGGT
TTGATCGCGCAGTTGATCATATTCCGCCCCCCCTTTGTTAAACTCCCTTT
TCTCTGTTACTCCTTGTCTTCCCCCTGGCCGCGCACGAATGTCGATCGAT
TTCAAACTTGCCGACATGTTTGTCGGGGTTGCGCTGCTACCCGCCTCCAG
ACACGCTCCATCGCGCAGTCGTGCCTGTACCTCTGCTTGGACTACGGCCT
CAAGCTGATCCACCCTATCATGCCCTTCGTCACTGAGGAGCTGTGGCAGC
GGCTCCCGGGGAGGGGGAGCATGGGTGAGAACAATAGCACCGGTTGCAGG
GTGTAGGATTAAGAATTTTATTTCAGCATAACCCGTCTTACGTTCTTACA
CAGGCCTTGTGAATGCCCGCCTCTGACCGCTTCGATCAGTCATGTCGCCA
GTAAGCTCGGCCATGGCGTACGTCGTGTGTGCTGTGCATCTGTTATCAAA
CGCCAATCATAGCCATGGGTGGGAAACCTTATCGCCAGCTGCTGCTGTTA
CTGCTGCTGCTGGGCTGTTGATTACGTTTTGTTGTTTTGCTTGTGGTTGT
CGTCCGTGCAGTCACCCATGCATCTCGCTCTCCCTCCTGGTCGTCCCTCT
ATCTATCCCGGCTTGCCCGCCCAACCTAAACCCTGTAGGACCTTACCCTA
TCACATATATCACCATCCCGCACACGTCAACCCGTAACGCGTGTCGCCGC
CGTCGCCGTTCTCGCTGCTGTCAGGCCCGCAAGAGGCCCCGTCGATCATG
GTGGCGCCCTACCCCCAAGCGGACGAACGCTTCGCCAACCCCGCGGCCGA
GACGGACATGTCGGCGGTCAAGGCGGCCATCCACGCCGGCCGGTCGCTGC
GGTCGTCCTACGGAATAGTGCCCTCGGTGCGTGCCTTTGTACAAGCTTGG
CAAGCCAAGAAACGAACATTCGTTCGTCAAGCCTTAACTTTGAAGGAATC
AGAATTGGAACGAGTTCGGCATATCTGCTCAATCAGCCAATCACACCGGA
TGTGCTGGTGTCTTTCGAAAGCCCTGTTGACACGTTCTCTCAACCGAAGA
TAAACCTCCGCATTTCGTCAAGGTTTTAGACTGGCAAAAAAAAGTGAAAA
GTTTTTTTGCGACGGAAATACGATTTTTTTTTTTAAAGCTGCACAACGGA
TCAGCACGCACACAGCATCTGCTGGCACCGGGGAGCGGACAGCATGGAGC
GCACCCTTGCAGTACTCAAAACCAAGGGGTGGCAGAAGACCTCTGTCCCA
TCTTACTATCTAGATACGGGTAAGGCAAGTGGCGGCTTTGGCTCAACTTC
ACAACCCGGCAAGGAGCCAGACCACAGAAAAAGAATGGGCCCTTGTGCGA
CACAGAGGAGGACGCCGTTGCGTCCAGCCTTGCCTTCAGGCTTAGCTAGG
AGGCCAGCCAACGTGGTCGGCCCTGCGAATCCAGCAAGGAGGAGCTCGAC
TTATAACATCTACAACCCGTACCCTCCTCTATGGGGTGCAAGTCGGCGTG
TATGCCCCTGTTCCCTTTGGTGGGCTGCGAGCCCTCATTTTCCTATATAC
ATTCGTCCCTGCACCCAGGTTTCGAGGCTAATACATAATTTCCTATTTAC
TCCACGGTTTTTACGAATTAGAACCTGAAGTTTTGACATGTGGTCGGCAT
TAGTATAACGAAGACCTTGACCGGCCGCACTTTTTTTTTTGTAGTCCCCC
GATTCGACAATGATAGGATTCCCACTTGGCCTTCAATGGGGATATCTCGT
GAAAAAAAGAAAGAAAGAAAGAAAGGGTGCGGCTGGTCAAGGTCTTCGTT
ATGCTAATGCTGACCACATGTCAAAATATCAGGTTCTAACTCGTAAAAAC
CGTGGTGTAAATCGCTTTCAACCATTTTGTACGTTTCTTGGCTTGCCCCG
GTTGTAGTCTCTCTCTGTTCTCTTGCTGGCGAGTCGCTCGCTTGTTTTGG
CGAGAAGCGGCGTGTTGTGCACAAGGCCCTGGGTGCAAGCCGTGTACAGC
GGTAGCCGTAGCAGGGGCGAGAACAGAGATAGGTTCGGAAAACCCGTTAC
AAGTTTTTTTGGGACCAGTGGTGTTTGCTGGTACCGCTGCTTTTGTGACT
TGCTCTGTGTGTGTGGTTTTTGTCTTTGCCAAGTTGTGGTGCAAGCTGTC
TTTTTTTATCGATCTGCATCTCGAGTCGACTACACGCGAAGCTCTGCCTG
CATGCAACATGGTGCGCCGTGGGTGTTTTTTGCGGCTCTTGTCCTTGGGG
TGGGCGCTTCTTTTCCCTCCTTGTGCCTGCGTCTGTTCGTGTGTGCGTGC
TTCCTTTATTGTCGTCCAGCGGGGAAATTTTGTTTTGTTTCTCGTGTTGT
GTGTGTTTCGAGAGCCCCGCCTCCCGTGTGCCCACCCACATTTTGTTTTC
CATGTCTCTGTATTTCTTGAGCTCGCCTCACACGTACCAACCGAACTTTT
TTTTTTTTCGATGTTGCTCTGTGTTCTGGTGCGTCGTGTCCGCCAGGCGA
AGGCGGAGTTCTACGTCAAGTCCTCGTCGGAGGAGCGGCATAACGTCATC
ACCAAGCAGGTTCGTCGACTGACGATAGAATGACACTGTCATTGGCCTAC
TGGGGGTAGGACTTGGAAGGTTTGCTTTTGGCAGCAGCAGCGGCAGCTGC
GGTGGTACGAGCGGCCGCAACAACGCCACTGTTGTAGGAGTAGCAACAGC
AGCAGCAACAGCAGCTCATGAGATCCCAAGCAGCTGACTGGCTCACTTTT
CGATGAGCGCCTGCTTAAGGGGAAAGACCCACAACCCACGCCGCTTCCTG
CTTCCTTCCGATTCCGCCTTTGGTTTTTCTTCGAGCTCGTGCGTGCGTGC
GTGTACAATCTAAGCCTACTTCGGTTTGCCGTGTTTTTCCTCTACTGCAT
TTTCGTTTGAGCGGTTTCGTTGTCTTGACTCCCTCCCCCCCGTCCGCACG
CCTTGTCCTGATGGGATCCAGCCGCAAGGAGTGAATTATCGTCGTTGCTC
ATACATCTGCCCCCCCCTCCTTGCCACTGCCTGTTGTTTTTTTGTTTCCT
CGTGATATCATTTGTCATTGTTGTTGTTGTTGTTTTTGTTGCTGTTGTCA
TGTTTTAGGCGAGCGATTTCATCACCTTGGCCAAGGCGTCGACAGCGGTC
CCGATCATGAACGAGGAGCCCCCCGAGGGCTGCGCCGTGCACATCATCGA
CGACCAGTCGCAGGTAGGAGGCGCGGAGAAGCTTTATGCGAACGAGGTAG
TGCATCTCGAGGAGGGCGGGGCGGGGTAGGAAAGTTCTTGCTCTTGTTTT
GGAATTGTTGGGAGATATCTGTATGAGTCGCAGGTATGAGACTTGGAGAA
GCTTTGTGTGAAAAAATGAACCCCACCGAGCGGAGCGGGAAAGTTTTCGT
CTTGTCTCCGGATTTGTCGGGTATCGCGCCTGACCGCAGTATTTCCAGTA
TACCTGATGTGCGTATCTTCGCATTCTCGGAACTTGGAGGAGAAAGTTGT
ACCGGTTGAGTGGTTCTACTTCCCTGTGCGTTCATTTCATGGATGCAAGG
GGTGCGGATGACCCATCTGGCAATGCAGTAGTGCGGCACAGTAGTAAATG
TCTGTCCCCGCCGCGGGCGCTCGCCGTCGTGCCAGGTGTACGTGCAGCTG
CGAGGGTTGGTCAACTTCGACGTGGAGATCAAGAAGCTCCAGAAGCAGGT
AACCACGTACACGGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13143:427..4792+

>mRNA_Ecto-sp13_S_contig13143.2555.1 ID=mRNA_Ecto-sp13_S_contig13143.2555.1|Name=mRNA_Ecto-sp13_S_contig13143.2555.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=639bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13143:427..4792+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTTTGGCGACGCTACCCAGGTGGCGTACTCGTTCTGGCTGTACGACCT
TTGCGACTACTACCTCGAGCTCATCAAGCCCGTCGTCGGCGACACGAGCG
AAGGAAACAAAGAGACACGCTCCATCGCGCAGTCGTGCCTGTACCTCTGC
TTGGACTACGGCCTCAAGCTGATCCACCCTATCATGCCCTTCGTCACTGA
GGAGCTGTGGCAGCGGCTCCCGGGGAGGGGGAGCATGGGCCCGCAAGAGG
CCCCGTCGATCATGGTGGCGCCCTACCCCCAAGCGGACGAACGCTTCGCC
AACCCCGCGGCCGAGACGGACATGTCGGCGGTCAAGGCGGCCATCCACGC
CGGCCGGTCGCTGCGGTCGTCCTACGGAATAGTGCCCTCGGCGAAGGCGG
AGTTCTACGTCAAGTCCTCGTCGGAGGAGCGGCATAACGTCATCACCAAG
CAGGCGAGCGATTTCATCACCTTGGCCAAGGCGTCGACAGCGGTCCCGAT
CATGAACGAGGAGCCCCCCGAGGGCTGCGCCGTGCACATCATCGACGACC
AGTCGCAGGTGTACGTGCAGCTGCGAGGGTTGGTCAACTTCGACGTGGAG
ATCAAGAAGCTCCAGAAGCAGGTAACCACGTACACGGAG
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