mRNA_Ecto-sp13_S_contig13139.2553.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13139.2553.1
Unique NamemRNA_Ecto-sp13_S_contig13139.2553.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13139.2553.1 vs. uniprot
Match: D7FVK7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVK7_ECTSI)

HSP 1 Score: 257 bits (657), Expect = 5.140e-80
Identity = 133/140 (95.00%), Postives = 137/140 (97.86%), Query Frame = 1 
Query:  274 MAPSEAPLNAEAVARAVIGLPSAVFVGDVSGALDAEASALADKLDPKLEEIKTDINAALELCHSGNEPSAGEWQDDVETLRSGVRSIKTMAVSLLNNTYVAPRARERLHREPSLSSFGGSSRAGGALGQPSTDQEFVLEL 693
            MAPSEAPLNAEA+ARAV GLPSAVFVG VSGALDAEASAL DKLDPKLEEIKTDINAALELCHSGNEPSAGEWQDDVETLR+GVRSIKT+AVSLLNNTYVAPRARERLHREPSLSSFGGS+RAGGALGQPSTDQEFVLEL
Sbjct:    1 MAPSEAPLNAEAIARAVTGLPSAVFVGGVSGALDAEASALVDKLDPKLEEIKTDINAALELCHSGNEPSAGEWQDDVETLRAGVRSIKTIAVSLLNNTYVAPRARERLHREPSLSSFGGSTRAGGALGQPSTDQEFVLEL 140
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13139.2553.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVK7_ECTSI5.140e-8095.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13139contigEcto-sp13_S_contig13139:152..3730 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1792
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-15_003660.1
Cds size423
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13139.2553.1prot_Ecto-sp13_S_contig13139.2553.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13139 1248..3457 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462703.5261664-UTR-Ecto-sp13_S_contig13139:151..12471681462703.5261664-UTR-Ecto-sp13_S_contig13139:151..1247Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13139 152..1247 -
1681462703.5731714-UTR-Ecto-sp13_S_contig13139:3457..37301681462703.5731714-UTR-Ecto-sp13_S_contig13139:3457..3730Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13139 3458..3730 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462703.534914-CDS-Ecto-sp13_S_contig13139:1247..13521681462703.534914-CDS-Ecto-sp13_S_contig13139:1247..1352Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13139 1248..1352 -
1681462703.5429444-CDS-Ecto-sp13_S_contig13139:1666..17341681462703.5429444-CDS-Ecto-sp13_S_contig13139:1666..1734Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13139 1667..1734 -
1681462703.5509596-CDS-Ecto-sp13_S_contig13139:2567..26611681462703.5509596-CDS-Ecto-sp13_S_contig13139:2567..2661Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13139 2568..2661 -
1681462703.5588765-CDS-Ecto-sp13_S_contig13139:3301..34571681462703.5588765-CDS-Ecto-sp13_S_contig13139:3301..3457Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13139 3302..3457 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13139.2553.1

>prot_Ecto-sp13_S_contig13139.2553.1 ID=prot_Ecto-sp13_S_contig13139.2553.1|Name=mRNA_Ecto-sp13_S_contig13139.2553.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=141bp
MAPSEAPLNAEAVARAVIGLPSAVFVGDVSGALDAEASALADKLDPKLEE
IKTDINAALELCHSGNEPSAGEWQDDVETLRSGVRSIKTMAVSLLNNTYV
APRARERLHREPSLSSFGGSSRAGGALGQPSTDQEFVLEL*
back to top

mRNA from alignment at Ecto-sp13_S_contig13139:152..3730-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13139.2553.1 ID=mRNA_Ecto-sp13_S_contig13139.2553.1|Name=mRNA_Ecto-sp13_S_contig13139.2553.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3579bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13139:152..3730- (Ectocarpus species13 EcNAP12_S_4_19m)
CGTTCGGGAGGTGGACATATCCTTGCGAAAACAATATATTCCTGTCTGTG
GGGATCCCTCCCACTTCTTTGATCTTGCTACCCGCCAGAGCAGCAGTGGC
AGCCCACAGGCAATTTTCAAGAGGCTCATGCTAACTGGACCCGTGGACTA
CACCGTAACCCGTGCGGCCTCTTGCCACACATCGATGAGCTGCCCTTCTC
GGCGCTGAAAGAAAACACGGTCCCCTTCCAGTCACTGTCTTTTCAGGAAC
GACAACACAAAACCGTTATATCAATGGCACCCTCGGAGGCTCCCCTCAAT
GCGGAGGCAGTAGCCCGCGCCGTGATCGGCCTTCCTTCAGCGGTGTTCGT
CGGGGACGTGAGCGGGGCTCTCGACGCGGAAGCGAGTGCCTTGGCAGACA
AGCTAGACCCCAAGCTGGAGGAGATCAAGGTGCGGAACATTCAACACTGT
GTACATCATTAGCCCGGTCTGTTGGTGGGATGGTTTGTAAGCGTCCAGCG
AAACCCCACGGATCCTTCCCATGCGCTCCCACCCCGTCTCCTCGCGCCCT
CGCCACACCAACAATTTTGTATTGTTGGAATTGGTATGGCAGTCTACAGC
AGTAACCGCACAACCTTGAGACCACTTGTACACGATATGTGTAAGCTGCT
GTCCGGTCCCGCTCATGTTACTCAATACTCCGCATGTCACATCCGTTTTG
AAGGGTCGACCGATATTGCTGTTCTGCGGTTGTCCCATTTCACAAGACGC
GTCCATGGTGTTACAGCAGTGTTGGGTCGGCTAGTCAATGTGCACCGACC
CGTGGGAAGAGCAAGGAGGGGAGCTTGGTGGTGCATAACTTTGCTGCGAT
CGAGTCCCCAACCTCTCCAACTTCAGAAAACTGCTGTTTAGCTGACATTA
CCAGCTGGCGCAATTTTGGTGGCGTTGGAAACGTTGCAACTGCAAGCCCA
GGTTCGGGTTGCTGGTGACACACGGACATGTCGATTCCTCTTTTTTCGAT
TTACCGCTACCGATGCAAGGCTGGCTTTTACCTTTACAAACCCACGTTAT
CTACAAATTGTTCGCAAAGACCGATATCAACGCCGCTTTGGAGCTGTGCC
ACTCCGGGAACGAGCCGTCTGCTGGGGAGTGGCAAGACGACGTCGAGACC
CTGCGATCGGGCGGTAAGAGAAGCACGGCATGTATCGCTGCTGTAGCGGT
TGTCTTTGACCTCAGGCTCGACCCTGGCCCTCGCATACCGTCTACATATC
GAATACTCAATGTAGTCGAAGCGATGGAGTCCCAATGTCATCATGATCGG
GTCCTAGGAAGTACCCTGATGCGAGAAGTTGGGGCGGCTCTCTCGTGAAA
GCCTTTGGTAGGAAGATGCAGCGTCGTATTATGGGCGCAACAGAGTCCCT
CCACGCATGCCACTGTAGTCTCCTGTTGTTGTAAACTCGATGCGTTCGCT
GGAAGGCGAGCAAAGCTCGGGCTTGGCTTGTACCAGGCCCGCCACACTGC
TGGGCGTTGAGTGATTGTATAGCTCGAGTAAGCAGCGGTGTTGACCCCAC
ATTTACCTGTGACCTTCAGTTACGACGTGTCGTTTTCGGTGGACGACACG
TCAAGGAGGGTGTCAAGTCCCCATGACATGTGTTCCGACATCTCCCGACA
AAGTTATCGAACGTCAACATCCTGGCCCACTATGCCGGATACCAGACCGT
CTCTTGTTGCACTGCCTAACACGTGGGTGCATTTGTTGCCCTGCTTTTTG
CTGAAAGTGTTGCGAGCACGCGCGTGGTAGACTGATGCATGCAGGATTGC
GATCCTCAGCGCGTCGTCTCAATAATATTACCCGCGCACTTGTTGATAGT
TGCTTGTTTCCGGAACAGATGTGAGTGCATTTGGACCGGGGATCAAAAAA
GGATTTGACGCATGATGTTTGCCGGCGTCTCTCTTGTGGCTACATGTTCG
TCGTCGTTGATGCTTGCCGTTGCTCGCCTTTGCGCCTTTCATGCAGTGCG
GTCGATCAAGACCATGGCGGTGAGCTTGCTGAACAACACGTACGTAGCGC
CTCGGGCACGAGAGGTGAGCTTCTCTACGTGACTGCGCCGCAAGCCGGCC
CGGTTTGACGGCATAGCGGTGGTCCCGCGCGAAGCTTGCTCCTCGCCAAT
TGATTGTCAGCGTTCGCTCCTTCTGGCTGTGCGTGCAGAGGCTGCTTTGG
TGAGGACCACCCACCGCCAGTCTCCGCGTTTTAGCCGGCCGGTCATCATC
TTGCGCCTGTAAATCAGCGTTCATTTTGTAAATGACTCAAGAATTAAACC
TCTTTCTCCTCTCGCCGTTTGTTGGGTCTTATCGTATTGTGTGGTCCTGT
TTTGCCCGGGGTTTCCGTTTTCCGAAAGCGCCTTCATCGAGAGCCCTCCC
TCTCGTCCTTCGGAGGTTCATCAAGGGCCGGGGGCGCATTAGGGCAACCT
TCCACGGACCAAGAGTTCGTCCTGGAGTTGTAATTTGCTTTCAGTTTGCC
TAGTTTCTGTCGTATCAATATATTTCCTGTGTGGTTGGAGTCTGTCATCT
GTAATTATGTCGGCATACCATTCGTTTTTTTTGGTTCGGGTGGTTGATGG
GCAAGTCTACACTCGTGCTTGCAAACAGAATGTCGATGCCTTAAGCCGAT
TTGCTTCAGACCCAATGCGGACGAAACTTGTCTGAGAAGTTGTCCATTTG
AGCGAGGAGGAATTGGAATGGAGGTTCAGCCAATCGCAAATCCCTTCATG
TGTACAGGGGTTCCTCTCACAGCGGGGAATCGTCCTCGACAGACGTCGTG
GGTAGCTTGCGCCTTGTTTCGGGGGGATTTGCATACGATCAGGAACGTGA
GTGAGCGTGAATATTGGACCAGGTCTCGAGGGGGAAAGAAGAGCCTAGCG
CCCAGACAGGAGTTGCTTCGCTTGGGCAGCAGTCACTGCTCTGCACCTGC
ACCAGACGGCGTTTGATTGGCGATAAGGTTTTTAAATGTGGTAGCTACTG
TTGCAGCAGATATTATTCCGTGTTTTTTGTGTGCGTGTTTGTCCCATCTG
ACACTACTGTAGTCTGCGCACCTTTCGGTGTGCCTGTTGGACGCATGCAG
AGCAGTCGGGAACACACAAAGTACTATAGCACAGACGTTCTTCCCAGTAA
ATGAGCCGCGGAGGGCGAAGCGTGGCATTTTTTTCCTTTCGCCCCCAGGA
GGGAAAAAAGGCTCTATATATCGGCCAAAGTTGCGCCGCACGATACAGGG
GCCCCAAAACTTGGTTTCCGTGAAGCCGATATAACCCACTTTGCTTCTCA
ACCCCGGGGTTTCTCCGCGGAAAGGTGTGCACATAAACCAAGGAACTCCC
TGTCGATCAGCAAGCACCAAGGGTTTCTAGGGGATACTCATAGGAATGGA
CAGGTCGTGCTGAGGCGATAGGTCAAGCGAAATAAGAGAGTACTTTAGGT
GGGTTTGTACATCTGAAGCTATGAAGCATCCTGCTGGTGGGGGACGCGTT
TCGTGCCCTTCTCAGTTTGGTCGACAGCGTACAGTAGCGTCCCATATTGC
ATTTCCTCGAACGGATTACGTGTATCCCT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13139:152..3730-

>mRNA_Ecto-sp13_S_contig13139.2553.1 ID=mRNA_Ecto-sp13_S_contig13139.2553.1|Name=mRNA_Ecto-sp13_S_contig13139.2553.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=423bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13139:152..3730- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCACCCTCGGAGGCTCCCCTCAATGCGGAGGCAGTAGCCCGCGCCGT
GATCGGCCTTCCTTCAGCGGTGTTCGTCGGGGACGTGAGCGGGGCTCTCG
ACGCGGAAGCGAGTGCCTTGGCAGACAAGCTAGACCCCAAGCTGGAGGAG
ATCAAGACCGATATCAACGCCGCTTTGGAGCTGTGCCACTCCGGGAACGA
GCCGTCTGCTGGGGAGTGGCAAGACGACGTCGAGACCCTGCGATCGGGCG
TGCGGTCGATCAAGACCATGGCGGTGAGCTTGCTGAACAACACGTACGTA
GCGCCTCGGGCACGAGAGCGCCTTCATCGAGAGCCCTCCCTCTCGTCCTT
CGGAGGTTCATCAAGGGCCGGGGGCGCATTAGGGCAACCTTCCACGGACC
AAGAGTTCGTCCTGGAGTTGTAA
back to top