mRNA_Ecto-sp13_S_contig13138.2552.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13138.2552.1
Unique NamemRNA_Ecto-sp13_S_contig13138.2552.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13138.2552.1 vs. uniprot
Match: A0A6H5KRF6_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRF6_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 1.170e-43
Identity = 82/97 (84.54%), Postives = 86/97 (88.66%), Query Frame = -1 
Query:    1 SQEGGYDEGPHGGKVYCDQQGN-----QTMTFREKIDKVFADTSKKMEEGSTGKKALAFLTSALGRVVSTSSPEKLVYDLQTFAVQTGTPYSEYLTT 276
            SQ GGYDEGPHGGKVYCD+QGN      T+TFREKIDKVFADTSKKM+EGSTGKKAL FLTSAL RVVS+SSPEKLVYDLQT AV TGTPYSEYLTT
Sbjct:    9 SQGGGYDEGPHGGKVYCDRQGNFHTGRWTITFREKIDKVFADTSKKMDEGSTGKKALTFLTSALWRVVSSSSPEKLVYDLQTCAVPTGTPYSEYLTT 105
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BLAST of mRNA_Ecto-sp13_S_contig13138.2552.1 vs. uniprot
Match: A0A6H5KBL4_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBL4_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 1.780e-32
Identity = 66/69 (95.65%), Postives = 67/69 (97.10%), Query Frame = -1 
Query:    4 QTMTFREKIDKVFADTSKKMEEGSTGKKALAFLTSALGRVVSTSSPEKLVYDLQTFAVQTGTPYSEYLT 210
            QTMTFREKIDKVFADTSKKMEEGSTGKKALAFLTSALGRVVS+SSPEKLVYDLQTFA  TGTPYSEYLT
Sbjct:  240 QTMTFREKIDKVFADTSKKMEEGSTGKKALAFLTSALGRVVSSSSPEKLVYDLQTFAAPTGTPYSEYLT 308
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BLAST of mRNA_Ecto-sp13_S_contig13138.2552.1 vs. uniprot
Match: A0A6H5K0Q4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Q4_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 1.360e-30
Identity = 60/70 (85.71%), Postives = 67/70 (95.71%), Query Frame = -1 
Query:    1 QTMTFREKIDKVFADTSKKMEEGSTGKKALAFLTSALGRVVSTSSPEKLVYDLQTFAVQTGTPYSEYLTT 210
            QT+TFREKI KVF+DTSKK+EEGSTG+KALAFLTSALGRVV++SSPEK+VYDLQTFAV TGTPY EYLTT
Sbjct:    5 QTITFREKIGKVFSDTSKKIEEGSTGRKALAFLTSALGRVVNSSSPEKVVYDLQTFAVPTGTPYREYLTT 74
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BLAST of mRNA_Ecto-sp13_S_contig13138.2552.1 vs. uniprot
Match: A0A6H5K8R6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8R6_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 1.260e-29
Identity = 60/69 (86.96%), Postives = 64/69 (92.75%), Query Frame = -1 
Query:    1 TMTFREKIDKVFADTSKKMEEGSTGKKALAFLTSALGRVVSTSSPEKLVYDLQTFAVQTGTPYSEYLTT 207
            TMTFREKIDK+F+DTSKKMEE STG+KALAFLTSALGRVVS+S PEKLVYDLQT AV TGTPY EYLTT
Sbjct:  152 TMTFREKIDKIFSDTSKKMEERSTGRKALAFLTSALGRVVSSSLPEKLVYDLQTLAVPTGTPYGEYLTT 220
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BLAST of mRNA_Ecto-sp13_S_contig13138.2552.1 vs. uniprot
Match: A0A6H5JYQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYQ6_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 1.170e-20
Identity = 46/51 (90.20%), Postives = 48/51 (94.12%), Query Frame = -1 
Query:    1 MEEGSTGKKALAFLTSALGRVVSTSSPEKLVYDLQTFAVQTGTPYSEYLTT 153
            MEEGSTGKKALAFLTSALG+VVS+SSPEKLVYDLQ FAV TGTP SEYLTT
Sbjct:    1 MEEGSTGKKALAFLTSALGKVVSSSSPEKLVYDLQRFAVPTGTPNSEYLTT 51
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BLAST of mRNA_Ecto-sp13_S_contig13138.2552.1 vs. uniprot
Match: D7G674_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G674_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 5.210e-18
Identity = 43/51 (84.31%), Postives = 46/51 (90.20%), Query Frame = -1 
Query:    1 MEEGSTGKKALAFLTSALGRVVSTSSPEKLVYDLQTFAVQTGTPYSEYLTT 153
            M  GSTG++AL FLTSALGRVVS+SSPEKLVYDLQTF V TGTPYSEYLTT
Sbjct:    1 MARGSTGREALTFLTSALGRVVSSSSPEKLVYDLQTFTVPTGTPYSEYLTT 51
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BLAST of mRNA_Ecto-sp13_S_contig13138.2552.1 vs. uniprot
Match: A0A6H5K9S7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9S7_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 1.140e-17
Identity = 40/44 (90.91%), Postives = 42/44 (95.45%), Query Frame = -1 
Query:   22 MEEGSTGKKALAFLTSALGRVVSTSSPEKLVYDLQTFAVQTGTP 153
            MEEGSTG+KAL FLTSALGRVVS+SSPEKLVYDLQTFAV TGTP
Sbjct:    1 MEEGSTGRKALTFLTSALGRVVSSSSPEKLVYDLQTFAVPTGTP 44
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13138.2552.1 vs. uniprot
Match: A0A6H5K255_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K255_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 1.930e-17
Identity = 44/47 (93.62%), Postives = 46/47 (97.87%), Query Frame = -1 
Query:    1 STGKKALAFLTSALGRVVSTSSPEKLVYDLQTFAVQTGTPYSEYLTT 141
            +TGKKALAFLTSALGRVVS+SSPEKLVYDLQTFAV TGTPYSEYLTT
Sbjct:  457 ATGKKALAFLTSALGRVVSSSSPEKLVYDLQTFAVPTGTPYSEYLTT 503
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13138.2552.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KRF6_9PHAE1.170e-4384.54CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KBL4_9PHAE1.780e-3295.65CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5K0Q4_9PHAE1.360e-3085.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8R6_9PHAE1.260e-2986.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYQ6_9PHAE1.170e-2090.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G674_ECTSI5.210e-1884.31CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K9S7_9PHAE1.140e-1790.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K255_9PHAE1.930e-1793.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13138contigEcto-sp13_S_contig13138:1101..2003 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size278
Hectar predicted targeting categorymitochondrion
Exons2
Cds size276
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462703.4904823-CDS-Ecto-sp13_S_contig13138:1100..11651681462703.4904823-CDS-Ecto-sp13_S_contig13138:1100..1165Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13138 1101..1165 -
1681462703.502094-CDS-Ecto-sp13_S_contig13138:1792..20031681462703.502094-CDS-Ecto-sp13_S_contig13138:1792..2003Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13138 1793..2003 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13138.2552.1prot_Ecto-sp13_S_contig13138.2552.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13138 1101..2003 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13138.2552.1

>prot_Ecto-sp13_S_contig13138.2552.1 ID=prot_Ecto-sp13_S_contig13138.2552.1|Name=mRNA_Ecto-sp13_S_contig13138.2552.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=92bp
GSQVLTIRRSSLYCKRLQVIHQLLGRRCTHHPPQRRSQECQRFLTRRPFF
HFLRRIRKDLVYLLAERHRLVALLVAVNLAPVRTLVVPPFL*
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mRNA from alignment at Ecto-sp13_S_contig13138:1101..2003-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13138.2552.1 ID=mRNA_Ecto-sp13_S_contig13138.2552.1|Name=mRNA_Ecto-sp13_S_contig13138.2552.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=903bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13138:1101..2003- (Ectocarpus species13 EcNAP12_S_4_19m)
GGTAGTCAGGTACTCACTATACGGCGTTCCAGTCTGTACTGCAAACGTCT
GCAAGTCATACACCAACTTCTCGGGCGACGATGTACTCACCACCCTCCCC
AACGCCGAAGTCAAGAATGCCAACGCTTTCTTACCCGTCGACCCTTCTTC
CATTTTCTTCGACGTATCCGCAAAGACCTTGTCTATCTTCTCGCGGAACG
TCATCGTCTGGGCAGGGGACATGGATCGGGTGATGGAAGTGATCAAATGT
CTGTGTACAGGTTTTTCCCAACCCGGCACCCACCATCCATCGTAATCCCC
CACCGCCCAAAACACATCGTTGACTGTATCTTCCAACCTTCTGTTGATAG
AAACCAACTCTTCCGGGGAATCAGAGAGTGGTATCCAAGGGAGCTTAGTC
CAATACTTCATGTTCATCGTCACATAGCCCGTCATGATCTTCTGTTTCTC
CCTCGAGGTCAACGGCTGGGTTGTGAAACTCTCCTGTTCTTTCTGAACCG
TTACTACCGGCTCTGTCTGAGTCACCACCTTTTCCTGCTCTTGGTTGACA
GGCACCGACCCCCTTGCCGTCACCCTAGGTTCAGCTGCACCTGCTTCACG
TTTTACGTCCGTGTCCTGGAGGCTTAGCAGTTTGAACTGACCTCTCATTT
CAGCCAACTTCTGCTTCAGAGTTTCGATTTTCTTCTCTTTGTTAGACAAC
TCATCCTTGAACTCGGTTTTGAGTTTGTCATCAACCGGGGCTGTCTTTTC
TTCCCTTAACACCTCTTCCTCCTTCCCTTCTTCCTTGACAGACACGTTAC
ACCCCCTGTCCCCTCCCACCCACCTTCCAGTGTGGAAGTTGCCTTGCTGG
TCGCAGTAAACCTTGCCCCCGTGAGGACCCTCGTCGTACCCCCCTTCTTG
TGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13138:1101..2003-

>mRNA_Ecto-sp13_S_contig13138.2552.1 ID=mRNA_Ecto-sp13_S_contig13138.2552.1|Name=mRNA_Ecto-sp13_S_contig13138.2552.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=276bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13138:1101..2003- (Ectocarpus species13 EcNAP12_S_4_19m)
GGTAGTCAGGTACTCACTATACGGCGTTCCAGTCTGTACTGCAAACGTCT
GCAAGTCATACACCAACTTCTCGGGCGACGATGTACTCACCACCCTCCCC
AACGCCGAAGTCAAGAATGCCAACGCTTTCTTACCCGTCGACCCTTCTTC
CATTTTCTTCGACGTATCCGCAAAGACCTTGTCTATCTTCTCGCGGAACG
TCATCGTCTGGTTGCCTTGCTGGTCGCAGTAAACCTTGCCCCCGTGAGGA
CCCTCGTCGTACCCCCCTTCTTGTGA
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