mRNA_Ecto-sp13_S_contig13135.2551.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13135.2551.1
Unique NamemRNA_Ecto-sp13_S_contig13135.2551.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig13135.2551.1 vs. uniprot
Match: A0A6H5JI70_9PHAE (5'-nucleotidase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI70_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 1.020e-27
Identity = 59/63 (93.65%), Postives = 60/63 (95.24%), Query Frame = 1
Query:    1 LGDSLGDLNMAKGLSAEETLTVGFLNDKVEERMDAYLKAYDVVILGDGSFDFVFELLEEVASK 189
            LGDSLGDLNMAKGL AEETLTVGFLNDKVEER DAYLKAYDVVILGDGSFDFV ELLE+VASK
Sbjct:  238 LGDSLGDLNMAKGLRAEETLTVGFLNDKVEERADAYLKAYDVVILGDGSFDFVLELLEQVASK 300          
BLAST of mRNA_Ecto-sp13_S_contig13135.2551.1 vs. uniprot
Match: D8LDF4_ECTSI (5'-nucleotidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDF4_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 1.940e-27
Identity = 57/63 (90.48%), Postives = 59/63 (93.65%), Query Frame = 1
Query:    1 LGDSLGDLNMAKGLSAEETLTVGFLNDKVEERMDAYLKAYDVVILGDGSFDFVFELLEEVASK 189
            LGDSLGDLNMAKGLSAEE LTVGFLNDK+EER DAYLKAYDV+ILGDG FDFV ELLEEVASK
Sbjct:  204 LGDSLGDLNMAKGLSAEEILTVGFLNDKIEERTDAYLKAYDVIILGDGGFDFVLELLEEVASK 266          
BLAST of mRNA_Ecto-sp13_S_contig13135.2551.1 vs. uniprot
Match: A0A0D2U9Z3_CAPO3 (5'-nucleotidase n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2U9Z3_CAPO3)

HSP 1 Score: 80.1 bits (196), Expect = 6.610e-14
Identity = 36/64 (56.25%), Postives = 50/64 (78.12%), Query Frame = 1
Query:    1 LGDSLGDLNMAKGLSAEETLTVGFLNDKVEERMDAYLKAYDVVILGDGSFDFVFELLEEVASKD 192
            LGDSLGDL M++G+  +  LT+GFLNDKV ER+++Y +A+DVVILGDGS D V+ L+  + S +
Sbjct:  323 LGDSLGDLQMSRGVDVDNILTIGFLNDKVAERLESYKQAFDVVILGDGSVDLVYNLISMIISGE 386          
BLAST of mRNA_Ecto-sp13_S_contig13135.2551.1 vs. uniprot
Match: UPI0001FE3700 (5'-nucleotidase n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=UPI0001FE3700)

HSP 1 Score: 80.1 bits (196), Expect = 7.620e-14
Identity = 36/64 (56.25%), Postives = 50/64 (78.12%), Query Frame = 1
Query:    1 LGDSLGDLNMAKGLSAEETLTVGFLNDKVEERMDAYLKAYDVVILGDGSFDFVFELLEEVASKD 192
            LGDSLGDL M++G+  +  LT+GFLNDKV ER+++Y +A+DVVILGDGS D V+ L+  + S +
Sbjct:  360 LGDSLGDLQMSRGVDVDNILTIGFLNDKVAERLESYKQAFDVVILGDGSVDLVYNLISMIISGE 423          
BLAST of mRNA_Ecto-sp13_S_contig13135.2551.1 vs. uniprot
Match: A0A835YMP4_9STRA (5'-nucleotidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMP4_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 5.000e-11
Identity = 35/61 (57.38%), Postives = 45/61 (73.77%), Query Frame = 1
Query:    1 LGDSLGDLNMAKGLSAEETLTVGFLNDKVEERMDAYLKAYDVVILG-DGSFDFVFELLEEV 180
            LGDSLGDL MA GL A+E L+VGFLND+ EER+ +YL  YDVVI+G D    +  +L+ E+
Sbjct:  210 LGDSLGDLQMASGLEADEVLSVGFLNDQAEERIGSYLAGYDVVIIGPDAGLQYALDLVREL 270          
BLAST of mRNA_Ecto-sp13_S_contig13135.2551.1 vs. uniprot
Match: A0A196SGZ3_BLAHN (5'-nucleotidase n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SGZ3_BLAHN)

HSP 1 Score: 70.1 bits (170), Expect = 1.400e-10
Identity = 28/67 (41.79%), Postives = 48/67 (71.64%), Query Frame = 1
Query:    1 LGDSLGDLNMAKGLSAEETLTVGFLNDKVEERMDAYLKAYDVVILGDGSFDFVFELLEEVASKDTFK 201
            +GD++GD++M+ G++ +  +++G LNDKVEERM++Y K +DVVI  D    FV EL++ +  +D + 
Sbjct:  229 IGDNIGDIHMSDGVAFQNQISIGLLNDKVEERMESYKKTFDVVICNDSDLSFVVELVKYIVEEDDYS 295          
BLAST of mRNA_Ecto-sp13_S_contig13135.2551.1 vs. uniprot
Match: UPI0007112D4D (7-methylguanosine phosphate-specific 5 n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI0007112D4D)

HSP 1 Score: 69.7 bits (169), Expect = 1.900e-10
Identity = 28/66 (42.42%), Postives = 46/66 (69.70%), Query Frame = 1
Query:    1 LGDSLGDLNMAKGLSAEETLTVGFLNDKVEERMDAYLKAYDVVILGDGSFDFVFELLEEVASKDTF 198
            +GD+LGD+ M+ G++ +  + +G LNDKV+ERMDAY   +DVVI  D    FV+++++ +  +D F
Sbjct:  229 IGDNLGDIRMSDGVAYQNQIAIGLLNDKVQERMDAYKSTFDVVICNDSDLKFVYDIVKYIVEEDDF 294          
BLAST of mRNA_Ecto-sp13_S_contig13135.2551.1 vs. uniprot
Match: UPI001FAD017B (7-methylguanosine phosphate-specific 5'-nucleotidase-like isoform X1 n=2 Tax=Girardinichthys multiradiatus TaxID=208333 RepID=UPI001FAD017B)

HSP 1 Score: 69.3 bits (168), Expect = 2.740e-10
Identity = 34/65 (52.31%), Postives = 48/65 (73.85%), Query Frame = 1
Query:    1 LGDSLGDLNMAKGLS-AEETLTVGFLNDKVEERMDAYLKAYDVVILGDGSFDFVFELLEEVASKD 192
            LGDSLGDLNMA G+S A+  LTVGFLND+VEER ++Y+ ++D+V+L D + D    +L  + S +
Sbjct:  251 LGDSLGDLNMADGVSEAQNILTVGFLNDQVEERKESYINSFDIVLLKDETMDIPNAILRHIVSPE 315          
BLAST of mRNA_Ecto-sp13_S_contig13135.2551.1 vs. uniprot
Match: A0A2D6U111_9ARCH (5'-nucleotidase n=1 Tax=Candidatus Pacearchaeota archaeon TaxID=2026773 RepID=A0A2D6U111_9ARCH)

HSP 1 Score: 68.9 bits (167), Expect = 2.850e-10
Identity = 32/63 (50.79%), Postives = 44/63 (69.84%), Query Frame = 1
Query:    1 LGDSLGDLNMAKGLSAEETLTVGFLNDKVEERMDAYLKAYDVVILGDGSFDFVFELLEEVASK 189
            LGD++GD+ M +G   +  + VGFLN+ VEE ++ Y K YDVVI+GDG F+FV  LL E+  K
Sbjct:  224 LGDNVGDVKMVEGFEYDNLIKVGFLNENVEENLEEYKKNYDVVIIGDGDFEFVNGLLGEMNGK 286          
BLAST of mRNA_Ecto-sp13_S_contig13135.2551.1 vs. uniprot
Match: A0A1V5QQ14_9ARCH (5'-nucleotidase n=1 Tax=archaeon ADurb.Bin336 TaxID=1866922 RepID=A0A1V5QQ14_9ARCH)

HSP 1 Score: 68.6 bits (166), Expect = 3.640e-10
Identity = 31/60 (51.67%), Postives = 45/60 (75.00%), Query Frame = 1
Query:    1 LGDSLGDLNMAKGLSAEETLTVGFLNDKVEERMDAYLKAYDVVILGDGSFDFVFELLEEV 180
            LGD+L DL M +G+   E + +GFLN+ +EE ++ Y KAYDVVIL DGS +FV +LL+++
Sbjct:  219 LGDTLDDLQMVEGIKYNEIIQIGFLNNNIEENLEQYKKAYDVVILNDGSMNFVNKLLKQI 278          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13135.2551.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JI70_9PHAE1.020e-2793.655'-nucleotidase n=1 Tax=Ectocarpus sp. CCAP 1310/3... [more]
D8LDF4_ECTSI1.940e-2790.485'-nucleotidase n=1 Tax=Ectocarpus siliculosus Tax... [more]
A0A0D2U9Z3_CAPO36.610e-1456.255'-nucleotidase n=1 Tax=Capsaspora owczarzaki (str... [more]
UPI0001FE37007.620e-1456.255'-nucleotidase n=1 Tax=Capsaspora owczarzaki (str... [more]
A0A835YMP4_9STRA5.000e-1157.385'-nucleotidase n=1 Tax=Tribonema minus TaxID=3033... [more]
A0A196SGZ3_BLAHN1.400e-1041.795'-nucleotidase n=1 Tax=Blastocystis sp. subtype 1... [more]
UPI0007112D4D1.900e-1042.427-methylguanosine phosphate-specific 5 n=1 Tax=Bla... [more]
UPI001FAD017B2.740e-1052.317-methylguanosine phosphate-specific 5'-nucleotida... [more]
A0A2D6U111_9ARCH2.850e-1050.795'-nucleotidase n=1 Tax=Candidatus Pacearchaeota a... [more]
A0A1V5QQ14_9ARCH3.640e-1051.675'-nucleotidase n=1 Tax=archaeon ADurb.Bin336 TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13135contigEcto-sp13_S_contig13135:1024..2173 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score99.0
Seed ortholog evalue7.9e-19
Seed eggNOG ortholog2880.D8LDF4
Model size678
KEGG rclassRC00017
KEGG koko:K01081
KEGG ReactionR00183,R00511,R00963,R01126,R01227,R01569,R01664,R01968,R02088,R02102,R02323,R02719,R03346
KEGG Pathwayko00230,ko00240,ko00760,ko01100,ko01110,map00230,map00240,map00760,map01100,map01110
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
EggNOG free text desc.Belongs to the pyrimidine 5'-nucleotidase family
EggNOG OGsKOG3128@1,KOG3128@2759
Ec32 ortholog descriptionHAD-like domain
Ec32 orthologEc-15_000820.2
EC3.1.3.5
Cds size177
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462703.431014-UTR-Ecto-sp13_S_contig13135:1023..10501681462703.431014-UTR-Ecto-sp13_S_contig13135:1023..1050Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13135 1024..1050 +
1681462703.4607677-UTR-Ecto-sp13_S_contig13135:1699..21731681462703.4607677-UTR-Ecto-sp13_S_contig13135:1699..2173Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13135 1700..2173 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462703.4411783-CDS-Ecto-sp13_S_contig13135:1050..11071681462703.4411783-CDS-Ecto-sp13_S_contig13135:1050..1107Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13135 1051..1107 +
1681462703.4512162-CDS-Ecto-sp13_S_contig13135:1579..16991681462703.4512162-CDS-Ecto-sp13_S_contig13135:1579..1699Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13135 1580..1699 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13135.2551.1prot_Ecto-sp13_S_contig13135.2551.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13135 1051..1699 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13135.2551.1

>prot_Ecto-sp13_S_contig13135.2551.1 ID=prot_Ecto-sp13_S_contig13135.2551.1|Name=mRNA_Ecto-sp13_S_contig13135.2551.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=59bp
MAKGLSAEETLTVGFLNDKVEERMDAYLKAYDVVILGDGSFDFVFELLEE
VASKDTFK*
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mRNA from alignment at Ecto-sp13_S_contig13135:1024..2173+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13135.2551.1 ID=mRNA_Ecto-sp13_S_contig13135.2551.1|Name=mRNA_Ecto-sp13_S_contig13135.2551.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1150bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13135:1024..2173+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTAGGGGACAGTCTAGGAGATCTCAACATGGCCAAGGGCCTAAGCGCGGA GGAGACTCTGACCGTCGGGTTTCTCAACGATAAGGTGGGTCGAATGGATC CCTCGAGTGTCGCGCCCGCGAGAGGGGAGTTCGGATCCGCCTGCGTGCCT ACCTTTTTGCTTTTCTGTCATCATTAGAGTGTTGCTGCTGTTTGTTGATG GTAGTGCTGTGTTGGTTGGGTTTCGTTCTGTTAGTGGGTCCCCAATTTCT TCATGCGTGTCTTGATCGTTGTATTTTTTCTTCGGTACTCCGCGCTTGAG ATATGTGTTTCACCGTGGTGGTGATTCCGCAAGGTTGTTGCTGCTGTTGC TGTTGTTGTTACTTTTGTCGTTGTCTTAGCACTACAACTGTATCGACCTG TCGTGATTCGATGAGCAAGCGAGTCCAAGGGCCGGAGGAGGCTACGTCTC CCGTGTTGCTTACGCTTCGTTCTGCACCCCCTTCCTTGAACTTGATATTT TTTTCACTCAATCCTCCTCCTCCGTGGCACATCTCCTTTGTTTCGTCGAC GCAAAGGTCGAGGAACGGATGGATGCCTACTTGAAGGCGTACGATGTCGT CATCCTCGGCGATGGGAGTTTTGACTTTGTTTTCGAGCTTTTGGAAGAAG TGGCCTCCAAAGATACTTTTAAATAACTGTTCAGGTTGCTGGTTTTACTA TAATTGAGTATTTACGGAAGAAATTTGGTATTCAGACGGTTCAGCTGGAG GTGGTAAAAACGTGCTTTCGGGAGTCTGGCCAGGAGGCCGGCGCTCGGCG ATAGCGGTGTTGCTTCCCATCATGTTGAGGTGTCGAAGAAGAAATGGCCT GCGAATAGACTGCTGTTCCCTTCATTGACGTATCGTTGTGCTGGCCCGTC GAAAGAAGAGTAGCCTTCGTTCGCCGGTTTCGGGGAAGTTGGGTTAGGGT TAAGGTTAGGGGATAGGGTCTGGCTCTCGCCCCCCTCGCTGTCTGTTTCC TCACAACATTTTATCGCGCGAAGAAGGCGGCCCTGAAGGACGCGGTTGAT TTTGGTTCATCTTGTTGTCTTCTCGTGATTTTGTTCGGGTGATGCACCCC AGAACGAAGAAAAAATGACGTTCTTTGTATCGACAAGATGTCGAAGTTGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13135:1024..2173+

>mRNA_Ecto-sp13_S_contig13135.2551.1 ID=mRNA_Ecto-sp13_S_contig13135.2551.1|Name=mRNA_Ecto-sp13_S_contig13135.2551.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=177bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13135:1024..2173+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCAAGGGCCTAAGCGCGGAGGAGACTCTGACCGTCGGGTTTCTCAA
CGATAAGGTCGAGGAACGGATGGATGCCTACTTGAAGGCGTACGATGTCG
TCATCCTCGGCGATGGGAGTTTTGACTTTGTTTTCGAGCTTTTGGAAGAA
GTGGCCTCCAAAGATACTTTTAAATAA
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