mRNA_Ecto-sp13_S_contig13134.2550.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13134.2550.1
Unique NamemRNA_Ecto-sp13_S_contig13134.2550.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13134.2550.1 vs. uniprot
Match: D7FY81_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY81_ECTSI)

HSP 1 Score: 425 bits (1092), Expect = 9.830e-148
Identity = 226/261 (86.59%), Postives = 232/261 (88.89%), Query Frame = 1 
Query:    1 GAELAYRCAAGLFAPPPHKRKDPLPLEEATTAAPAFGQAGSRGECGGRGSAXXXXXXXXXGGGSANLGPDMPPLRAEGGRTTPTDFFDFDVASPEMSMFLNDVLESYRVQGLAPRLSVASVKAKLCKVGVRLGGISKNTNFGMMSADEARYHLTMGMLGPEGVVMNELEGRAPQRVIADVELTCEEEFMVEDGEGKVVHKLESQGPKARENIVFFFIPPPQVHYITLQSNIGKDAELEWQITNINDVIKPTFNYYFSRFGH 783
            GAELAYRCAAGLFAPPPHKRKDP   EEA TAAPAFGQAGSRGECGG    XXXXXXXXX   SANLGPDMPP RA+GGRTTPTDFFDFDVASPEMSMFLNDVLESYR QGL PRLSVASV+AKLCKVGVRLGGISKNTNFGMMSADEARYHLTMGMLGPEGV++NELEGRAPQRVIADVELTCEEEF+VEDG+G VVHKLESQGPK              VHYITLQSNIGKDAELEWQITNINDVIKPTFNYYFSRFGH
Sbjct:   85 GAELAYRCAAGLFAPPPHKRKDPXXFEEAATAAPAFGQAGSRGECGGXXXXXXXXXXXXXXXXSANLGPDMPPQRAQGGRTTPTDFFDFDVASPEMSMFLNDVLESYRAQGLVPRLSVASVEAKLCKVGVRLGGISKNTNFGMMSADEARYHLTMGMLGPEGVLINELEGRAPQRVIADVELTCEEEFVVEDGKGNVVHKLESQGPK--------------VHYITLQSNIGKDAELEWQITNINDVIKPTFNYYFSRFGH 331
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BLAST of mRNA_Ecto-sp13_S_contig13134.2550.1 vs. uniprot
Match: W7TAG0_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TAG0_9STRA)

HSP 1 Score: 104 bits (260), Expect = 6.470e-23
Identity = 65/173 (37.57%), Postives = 97/173 (56.07%), Query Frame = 1 
Query:  253 DFFDFDVASPEMSMFLNDVLESYRVQGLAPRLSVASVKAKLCKVGVRLGGISKNTN--FGMMSADEARYHLTMGMLGPEGVVMNELEGRAPQRVIADVELTCEEEFMVEDGEGKVVHKLESQGPKARENIVFFFIPPPQ------VHYITLQSN-IGKDAELEWQITNINDVI 744
            DF + +  +P++S FL D+  SY   G+ P L V SV+AKL  + V  G +SKNT   FG M   EA  H+  G++GPEG ++ ELEG  P+R++A+VEL+ EE F  +        ++   G  A +++        Q       HY T +S+  G + +LEW ++NINDVI
Sbjct:  124 DFTNSNYCTPDLSCFLEDIKRSYTEWGVKPCLHVESVRAKLRCLRVEEGLLSKNTYALFGTMGRYEALTHIWEGVIGPEGRLLQELEGNVPRRLVAEVELSVEESFWFQSRPATAWPRV---GNNAEQDLEQGLTGGKQGEMKKRTHYFTFESDYFGDEGQLEWVVSNINDVI 293
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13134.2550.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FY81_ECTSI9.830e-14886.59Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W7TAG0_9STRA6.470e-2337.57Uncharacterized protein n=3 Tax=Monodopsidaceae Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13134contigEcto-sp13_S_contig13134:1946..4813 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score426.4
Seed ortholog evalue9.6e-117
Seed eggNOG ortholog2880.D7FY81
Model size786
Hectar predicted targeting categoryother localisation
Exons5
EggNOG OGs2C319@1,2SY82@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-24_003470.1
Cds size786
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462703.3701313-CDS-Ecto-sp13_S_contig13134:1945..20961681462703.3701313-CDS-Ecto-sp13_S_contig13134:1945..2096Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13134 1946..2096 -
1681462703.3793302-CDS-Ecto-sp13_S_contig13134:2465..26291681462703.3793302-CDS-Ecto-sp13_S_contig13134:2465..2629Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13134 2466..2629 -
1681462703.387808-CDS-Ecto-sp13_S_contig13134:3052..31071681462703.387808-CDS-Ecto-sp13_S_contig13134:3052..3107Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13134 3053..3107 -
1681462703.3958495-CDS-Ecto-sp13_S_contig13134:3769..39001681462703.3958495-CDS-Ecto-sp13_S_contig13134:3769..3900Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13134 3770..3900 -
1681462703.4040134-CDS-Ecto-sp13_S_contig13134:4528..48131681462703.4040134-CDS-Ecto-sp13_S_contig13134:4528..4813Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13134 4529..4813 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13134.2550.1prot_Ecto-sp13_S_contig13134.2550.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13134 1946..4813 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13134.2550.1

>prot_Ecto-sp13_S_contig13134.2550.1 ID=prot_Ecto-sp13_S_contig13134.2550.1|Name=mRNA_Ecto-sp13_S_contig13134.2550.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=262bp
GAELAYRCAAGLFAPPPHKRKDPLPLEEATTAAPAFGQAGSRGECGGRGS
AAGSAAESGGGGGSANLGPDMPPLRAEGGRTTPTDFFDFDVASPEMSMFL
NDVLESYRVQGLAPRLSVASVKAKLCKVGVRLGGISKNTNFGMMSADEAR
YHLTMGMLGPEGVVMNELEGRAPQRVIADVELTCEEEFMVEDGEGKVVHK
LESQGPKARENIVFFFIPPPQVHYITLQSNIGKDAELEWQITNINDVIKP
TFNYYFSRFGH*
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mRNA from alignment at Ecto-sp13_S_contig13134:1946..4813-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13134.2550.1 ID=mRNA_Ecto-sp13_S_contig13134.2550.1|Name=mRNA_Ecto-sp13_S_contig13134.2550.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2868bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13134:1946..4813- (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGCCGAGCTTGCCTACCGATGCGCTGCCGGACTCTTCGCCCCCCCTCC
GCACAAGCGGAAGGACCCACTGCCATTGGAGGAGGCAACAACCGCAGCCC
CAGCTTTCGGTCAAGCCGGTAGCCGGGGGGAATGCGGTGGCCGGGGTTCC
GCGGCTGGGTCAGCGGCGGAGTCGGGGGGAGGAGGGGGTTCGGCAAACCT
AGGACCGGATATGCCACCGCTGAGAGCTGAGGGGGGAAGAACAACGCCGA
CGGACTTCTTTGACTTCGACGTGGCATCGCCTGAAGTGAGCTTGAAGTGT
GTTGAAGAGAAATTTACCATGTACACGAAGTCATCGGGCGAACCGGCTGC
TGCCACGATGGTAATATGGTGTGCTGCCTCGCTTTCAGCTTTTGATCACA
TGAGCCAATGCAAGCTGTCTACGTCGGGCGCGTACGAAAAAAAATCGTGC
TGGGCATCACACTGGAACGACACCCGCGATGTCATGACCTCTTGACAAAT
GAACGGCATAGTATATTACCGAAGTGACGCACGGCAAACCCCCTCTGAAA
GTTCACGAATTGGCCATCTTGTCTTGTCTTCTTCTGAGTTTTTCTGGTGC
ATCGTCTCTCTGCGACAACCTTCTTCTTTCCCCTGTTGCTCGAGACATAC
TGCTCGAGACCTACTGCTGGCGTGTGTCACGGTCATATTTCCAACAGCAT
TATATTTCGAGTCGTCTTACACAAGCTTAGACGTCAAACCGTTCCCGGTC
CCGAGCTGTTTGCAAGTACTTTCCCACGAGAGCAAACCACGCCTGTCCTA
CGCATGAGTCGGTGCCGTCCTTCGAGTACCTTTTCATGTCTGCCCTGTTC
AGTGTTTCCCGACTCTTGTGCACTATGCTCCCCCTTCTTCCCTGCCTGTC
GATCTGAGCACAGATGAGCATGTTTCTGAACGATGTCTTGGAGTCATATC
GGGTGCAGGGGTTAGCGCCGCGGCTTTCGGTAGCCAGCGTGAAGGCAAAG
CTGTGCAAGGTCGGGGTTCGGCTCGGCGGGATTTCCAAGAACACGTACGT
CCGAAAAGTTACAACGTTTGTACCTGGACACACAACCGAACAGCCTTTCT
TCTTTTCTCAAACATGCTGTCTCATCATGGGGTGCTGATGTAGTTTGGGC
TATTTCTCTGTACGTGAATTTTCCCTACGGCCTGCCTTCAGTTTCTCTTC
TGATTTGCGTCTAATGGAGTTTTACAGAGACGATGCTGCCAATGGAGCTC
GATCTGTGGAATGAAAGCTCTTTGAAAGTTCATTAGCGGCCATCGCGTTG
TATTCTCTTTTGGTCTTGAGATACCTCCTGAGAGCTAAGATCCGGCGATA
CATCAAACTGAGTGCAGAGGTTCCCGCTGAATAGTGCAGAGGTTCAGCGT
TTTCGGTGGAAGGGTGCGGCGCTCTCTTTTTCCTCGAACCCGATGTTCGC
GCTAGGTAGGCACGCTGTAGGTTGCATCCTGCCCTGCTCCCCGGGAAGGA
TAATTATGCTGCTAAGCTTTGCTTCCTTCGACTCTGTTTTGGACTATCTA
CTGTCGTGCTTTCCTCACTAGAACCGAGCCGATGATCACGCCACAAGACG
CGACAGGGATATTTTTACGATGAGGGTAGCCTGTGTCAATTTCCCTCTGT
TTGAATTGGTTTCCTCACTTCGTTGCTTGTGTCTCTCCCCGTATTTTAAT
GTTCAGAAATTTCGGGATGATGAGCGCCGACGAGGCGAGGTACCACCTTA
CCATGGGAATGGTGAGTTTGACAGTCCCGCCCGATATCTGTTTTTTTCCG
GTTAAATTCGGCTCTCGTTTTCCCTACTTACGTGAAGCTGTTGTTGCTGT
TGTTTAAGTGTCAGGCAGCACGCTATTCCTCTTGATTACAGCATCGAAAC
AAAACGTGAGAGTCCGACCGGATCGAAATGGGAGCCATGATGCTGTTGTT
GCTACTGGCTGTTTTTGGTTCTCCTGCGTACCTCTGTTTCGTTGTTCCTT
GGAAGTCACGACAAACGAGCTGGCGAACAAGTAAGATTTTACTTGATCAT
CATCTGTTGCCGTAGGCGTGTCCATCATGTACCCGTCTTGCTCCGCCTGT
AGACGTCAACGAGTTGGAGGTTTTTGCTCCTTCCACTAAGCTTCGCAACA
AACTTGTTTTGGTTACATTCTTTTGACAATCCAGCTGGGACCCGAAGGGG
TGGTGATGAACGAGCTGGAGGGAAGAGCGCCACAGAGGGTCATCGCGGAC
GTAGAGCTGACCTGCGAAGAGGAATTCATGGTGGAAGACGGCGAGGGGAA
GGTGGTTCACAAGCTCGAATCGCAGGGGCCAAAGGCAAGGGAAAACATGT
TGTCGTTCATGCTGAGTTTATTTCGCTGATGCTGACTAAACCCTTGTTGT
TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTGTTGT
TATTGTGGTTGTCAACGATAGCTCAGGACGACACCGGGTTCGACGTTGCC
AGTAGATTTTCGAATCTGCCGGAGGTTGAACACACGCATTTTCTACGACG
TTTCCCGTTCGCGAAGCACGCCTTTGTGCTCTGTGTTCATCACTGCTTGG
CGGTGCACACATGCTTGCTTTTCAAGTGCGCTATCGTTCTTCCCGCTTCA
GAGCCACAAATAGGGGGGAAGGTCCTGATATTCGTCGCGTTGCACTGTTC
TCTTGAATTTTGAAGAGAGTTTTTTTTTTTATCCCGCCCCCTCAGGTGCA
CTACATTACGCTTCAGAGCAACATCGGGAAAGACGCCGAGCTGGAGTGGC
AGATCACTAACATCAATGATGTCATCAAGCCAACGTTCAACTACTACTTC
TCTCGCTTTGGGCACTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13134:1946..4813-

>mRNA_Ecto-sp13_S_contig13134.2550.1 ID=mRNA_Ecto-sp13_S_contig13134.2550.1|Name=mRNA_Ecto-sp13_S_contig13134.2550.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=786bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13134:1946..4813- (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGCCGAGCTTGCCTACCGATGCGCTGCCGGACTCTTCGCCCCCCCTCC
GCACAAGCGGAAGGACCCACTGCCATTGGAGGAGGCAACAACCGCAGCCC
CAGCTTTCGGTCAAGCCGGTAGCCGGGGGGAATGCGGTGGCCGGGGTTCC
GCGGCTGGGTCAGCGGCGGAGTCGGGGGGAGGAGGGGGTTCGGCAAACCT
AGGACCGGATATGCCACCGCTGAGAGCTGAGGGGGGAAGAACAACGCCGA
CGGACTTCTTTGACTTCGACGTGGCATCGCCTGAAATGAGCATGTTTCTG
AACGATGTCTTGGAGTCATATCGGGTGCAGGGGTTAGCGCCGCGGCTTTC
GGTAGCCAGCGTGAAGGCAAAGCTGTGCAAGGTCGGGGTTCGGCTCGGCG
GGATTTCCAAGAACACAAATTTCGGGATGATGAGCGCCGACGAGGCGAGG
TACCACCTTACCATGGGAATGCTGGGACCCGAAGGGGTGGTGATGAACGA
GCTGGAGGGAAGAGCGCCACAGAGGGTCATCGCGGACGTAGAGCTGACCT
GCGAAGAGGAATTCATGGTGGAAGACGGCGAGGGGAAGGTGGTTCACAAG
CTCGAATCGCAGGGGCCAAAGGCAAGGGAAAACATAGTTTTTTTTTTTAT
CCCGCCCCCTCAGGTGCACTACATTACGCTTCAGAGCAACATCGGGAAAG
ACGCCGAGCTGGAGTGGCAGATCACTAACATCAATGATGTCATCAAGCCA
ACGTTCAACTACTACTTCTCTCGCTTTGGGCACTGA
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