prot_Ecto-sp13_S_contig13133.2549.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig13133.2549.1
Unique Nameprot_Ecto-sp13_S_contig13133.2549.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length223
Homology
BLAST of mRNA_Ecto-sp13_S_contig13133.2549.1 vs. uniprot
Match: D7FU23_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU23_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 3.660e-15
Identity = 69/236 (29.24%), Postives = 116/236 (49.15%), Query Frame = 0
Query:    1 KPSSVVPEHRKRAICVWSSILLAVFLYTIWQVIVLINQQEHPSTAFNVSNDRFAFPYVSVCLEDGFGCYHPDGSTED-CVQSAIQYS------------DAEYEGETIEAIADEQYPNCVGFDLSQFEVPEGEREGPQQSVLLVMYW----TASEDPTAETE------YSESVEVVLGGPDDNEEITTVPYSRNLESSTEEIYAISAMTIGKTHRTFLDKDPVTSYPALTVSTTKY 213
            KP+ V+P+H++RA+ ++ ++++A+  Y+   V   + + ++PST+F +SN+ + +P   VCL + FGC   D + E+ C  S                 D E E  T   + DE+   CV F+ S  ++ +GER+ P+  +LL MYW    TA+   T  +E      +SESV + L   D       +  + +  +S    +  + M IG T    L +D   SY AL  S+  Y
Sbjct:    3 KPAEVLPQHKRRAVTLFITLIVAILAYSGLLVYNAVKKSKNPSTSFVLSNNVYRYPDTYVCLYNFFGC--DDMALEEFCASSVFDTEGGSSTAVFNPGGDLEQEIATTAYLTDER-GWCVSFETSAVDIVDGERD-PEDYILLNMYWYPGGTANASTTCISEEGEWESHSESVFMFLRDSDTGILSAGIQVAYSCMTSESSSHVFTYMGIGLTKEDKLYEDDTASYKALETSSAIY 234          
BLAST of mRNA_Ecto-sp13_S_contig13133.2549.1 vs. uniprot
Match: D8LT44_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT44_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 6.260e-9
Identity = 44/151 (29.14%), Postives = 76/151 (50.33%), Query Frame = 0
Query:    1 KPSSVVPEHRKRAICVWSSILLAVFLYTIWQVIVLINQQEHPSTAFNVSNDRFAFPYVSVCLEDGFGCYHPDGSTEDCVQS----------AIQYSDAEYE----GETIEAIADEQYPNCVGFDLSQ---FEVPEGEREGPQQSVLLVMYW 134
            KP  VVP H++RA+ +W+++++ +  Y+ + +   + ++E P T F +SN+ + +P + VCL   +GC   +   E+CV S          A+ Y   EYE    GE I  ++ ++   CV ++ S    F   E E       +LL M W
Sbjct:    3 KPEEVVPRHKRRAVLLWTTLIVGIISYSTYTLYRGLKRREDPGTTFKLSNNIYQYPDLWVCLYVNYGCDEME-LQEECVNSSNATEGGETLAVFYPGGEYEQVIPGEQI--LSKDKGFFCVEYETSTITTFLGQEPETGEYLDHILLDMSW 150          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13133.2549.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FU23_ECTSI3.660e-1529.24Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LT44_ECTSI6.260e-929.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 34..223
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..33
NoneNo IPR availableTMHMMTMhelixcoord: 13..35

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13133contigEcto-sp13_S_contig13133:21..3262 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13133.2549.1mRNA_Ecto-sp13_S_contig13133.2549.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig13133 21..3262 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig13133.2549.1 ID=prot_Ecto-sp13_S_contig13133.2549.1|Name=mRNA_Ecto-sp13_S_contig13133.2549.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=223bp
KPSSVVPEHRKRAICVWSSILLAVFLYTIWQVIVLINQQEHPSTAFNVSN
DRFAFPYVSVCLEDGFGCYHPDGSTEDCVQSAIQYSDAEYEGETIEAIAD
EQYPNCVGFDLSQFEVPEGEREGPQQSVLLVMYWTASEDPTAETEYSESV
EVVLGGPDDNEEITTVPYSRNLESSTEEIYAISAMTIGKTHRTFLDKDPV
TSYPALTVSTTKYVVPEVSSLSE
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