mRNA_Ecto-sp13_S_contig1313.2547.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1313.2547.1
Unique NamemRNA_Ecto-sp13_S_contig1313.2547.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1313.2547.1 vs. uniprot
Match: A0A6H5JK44_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK44_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 6.610e-41
Identity = 98/133 (73.68%), Postives = 102/133 (76.69%), Query Frame = 1 
Query:    4 AVQCIVMASINTLARVASMSVGRAPGASRRIATASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSFLQRLAAFLTGAGVGCGVGYYHLATEIKGSTAALEAAISKNHSNLSDRLDKLEGK 402
            AVQ IVMASINTLARVA+MSVGRAPG+SR IATAS              XXXXX      XXXXXXXXX       SSFLQR AAFLTGAGVGCG+GYYHLATEIKGSTAALEAAI+KNH NLSDRLDKLEGK
Sbjct:    8 AVQSIVMASINTLARVATMSVGRAPGSSRGIATASAAPARRFLSTTTSEXXXXXKHTPPSXXXXXXXXXAKTSSGGSSFLQRFAAFLTGAGVGCGLGYYHLATEIKGSTAALEAAIAKNHRNLSDRLDKLEGK 140
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BLAST of mRNA_Ecto-sp13_S_contig1313.2547.1 vs. uniprot
Match: D7FI30_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI30_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 1.330e-35
Identity = 102/128 (79.69%), Postives = 107/128 (83.59%), Query Frame = 1 
Query:   22 MASINTLARVASMSVGRAPGASRRIATASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-SSFLQRLAAFLTGAGVGCGVGYYHLATEIKGSTAALEAAISKNHSNLSDRLDKLEGK 402
            MASINTLARVA++SV RAP  SRRIATAS           XXXXXXXXXXXXXXXXXXXXXXXXX      SSFLQR+AAFLTGAGVGCGVGYYHL+TEIKGSTAALEAAI+KNHSN SDRLDKLEGK
Sbjct:    1 MASINTLARVATVSVARAPATSRRIATASAAPARRFLSTTXXXXXXXXXXXXXXXXXXXXXXXXXETSSGGSSFLQRVAAFLTGAGVGCGVGYYHLSTEIKGSTAALEAAIAKNHSNFSDRLDKLEGK 128
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BLAST of mRNA_Ecto-sp13_S_contig1313.2547.1 vs. uniprot
Match: D7FL85_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL85_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 1.630e-14
Identity = 74/98 (75.51%), Postives = 78/98 (79.59%), Query Frame = 1 
Query:   22 MASINTLARVASMSVGRAPGASRRIATASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-SSFLQRLAAFLTGAGVGCGVGYYHLAT 312
            MASINTLARVA++SV RAP  SRRIATAS           XXXXXXXXXXXXXXXXXXXXXXXXX      SSFLQR+AAFLTGAGVGCGVGYYHL+T
Sbjct:    1 MASINTLARVATVSVARAPATSRRIATASAAPARRFLSTTXXXXXXXXXXXXXXXXXXXXXXXXXETSSGGSSFLQRVAAFLTGAGVGCGVGYYHLST 98
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BLAST of mRNA_Ecto-sp13_S_contig1313.2547.1 vs. uniprot
Match: A0A835YZA6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZA6_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 4.660e-8
Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:  232 SSFLQRLAAFLTGAGVGCGVGYYHLATEIKGSTAALEAAISKNHSNLSDRLDKLEGK 402
            SS  +RLA+FL GAGVG G+GYYHL +E++ STAAL  AI +    L  RL+K E K
Sbjct:   67 SSLRERLASFLVGAGVGLGLGYYHLNSEVEESTAALLTAIDR----LQTRLEKAERK 119
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1313.2547.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JK44_9PHAE6.610e-4173.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI30_ECTSI1.330e-3579.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FL85_ECTSI1.630e-1475.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YZA6_9STRA4.660e-856.14Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1313contigEcto-sp13_S_contig1313:7676..10054 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size461
Hectar predicted targeting categorymitochondrion
Exons3
Cds size384
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462703.0863442-UTR-Ecto-sp13_S_contig1313:7675..77311681462703.0863442-UTR-Ecto-sp13_S_contig1313:7675..7731Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1313 7676..7731 -
1681462703.1337893-UTR-Ecto-sp13_S_contig1313:10033..100541681462703.1337893-UTR-Ecto-sp13_S_contig1313:10033..10054Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1313 10034..10054 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462703.0954382-CDS-Ecto-sp13_S_contig1313:7731..78241681462703.0954382-CDS-Ecto-sp13_S_contig1313:7731..7824Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1313 7732..7824 -
1681462703.1133363-CDS-Ecto-sp13_S_contig1313:8688..89291681462703.1133363-CDS-Ecto-sp13_S_contig1313:8688..8929Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1313 8689..8929 -
1681462703.1237013-CDS-Ecto-sp13_S_contig1313:9983..100331681462703.1237013-CDS-Ecto-sp13_S_contig1313:9983..10033Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1313 9984..10033 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1313.2547.1prot_Ecto-sp13_S_contig1313.2547.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1313 7732..10033 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1313.2547.1

>prot_Ecto-sp13_S_contig1313.2547.1 ID=prot_Ecto-sp13_S_contig1313.2547.1|Name=mRNA_Ecto-sp13_S_contig1313.2547.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=128bp
MASINTLARVASMSVGRAPGASRRIATASAAAARRFLSTTTSEAAAAEKP
TPPSPQPTPPPAAAKTSSGGSSFLQRLAAFLTGAGVGCGVGYYHLATEIK
GSTAALEAAISKNHSNLSDRLDKLEGK*
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mRNA from alignment at Ecto-sp13_S_contig1313:7676..10054-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1313.2547.1 ID=mRNA_Ecto-sp13_S_contig1313.2547.1|Name=mRNA_Ecto-sp13_S_contig1313.2547.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2379bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1313:7676..10054- (Ectocarpus species13 EcNAP12_S_4_19m)
TGTGCAGTGCAGTGCATCGTGATGGCTTCTATCAACACGCTCGCGAGAGT
AGCATCGATGTCGGTGGGGAGGTGAGGAAAAACTTGGCCCCCTCGTGAGA
TCTCGTTTATGCCTTCCAATCCGCACAAAGGTCCATTGCATTTTCCGCCG
CTCTCCAGCAGGATGCAGCGTATATGGAGTACTGCTGCTGCCTTTGTGTG
TTCCATAGGTTCCAAGAGGTCTCACACCTCCAACTGATATCCTGGAGGGC
AGGTGAATTATTCACGTTGTTTTCATGTACAGAGCATCAAGTTGCCGCTT
TTTTTTGCTTAGCGATGAAAGGATTGCTCAACGTGCAAGGTGTGTGATGG
ACATACAGCCGTTCTACATGCATAGCAGGTCGTAGTTGCCCTGGTTCTCC
TTAGACCGCTGCTGCTGTGCACTCCCTCCCTCGAGAGCCAGCAGAGAAGG
GTGATGCTGGTCAGCTCCCACCTGGAATAGCGCTTGTCGCAATCTCCGCG
AAAAGGTAGTTGCAGGTGTTAAGCACATCCGTTGACAACGGAGAGAGAAA
TCGAAGAGCAAATCGTTCTCAACCCATCACGAGTCTGTAGTCCATTTCGA
TTAGAGCTACCACATGTCCGTGTTGCGAACGAGGAGAGCGGTCTCGTACT
GCTGTTACCACGTAATAGTTGTAGCACCGGTGTGCAAGCCTGCCGCGAGT
TCAGCTACTCTTGTTTGATGAGAGTAGGTTTACTATGTCGACAGAAGGAG
CAAGCACGTACACGGATCGCCAACACAAAATAGAAGTTCACGCTCAAGCA
TGTCGGCCGTGGAACTTTCAGCCGACTCAACAACAACGCCGCTTACCTTG
TGCGACTATCGACACCGTCTACCGCACAAGATAACAAGTCACAAAAGTAC
GCACGACGTCGCGGTAATATATTTGTAACCCATCATGATATCCCGGGATT
AAGCATCACTCGAAACTAGTTGAAGATAACACCCACCCAGGTGCCGCTGA
GTGATGAGTTTTTTCAAGCGCAAGATAACAGTGTCACCGGCGGGGTGTGC
TATCCTGCGTGGTATTCGGCGGCTCTGGAATAATCCCTGCCGTCGGCCGT
TGCCTTCCCACCGTGTTCATCGCAGGGCGCCGGGGGCGTCCCGAAGGATC
GCTACTGCCTCCGCGGCGGCGGCACGGCGCTTCCTGTCAACAACAACAAG
CGAGGCCGCCGCCGCCGAGAAGCCTACCCCGCCGTCGCCACAGCCCACGC
CCCCACCGGCGGCGGCGAAGACCAGCAGCGGGGGTTCGTCTTTCCTGCAG
CGACTTGCGGCATTTTTGACCGGGGCTGGGGTGGGTTGCGGGGTCGGTTA
CTACCACCTGGCAACGGTGAGAAGGACCCATATACCGTTAGCGCCCGCAC
TGCTAGCTTTTGACCGGCCCATGTACCGTTAACGCCCGCGTTGCTAGTTG
TGGCAGGCCCATATACCGTTTGCGCCCGCGCTGCGAGTTTCGAGTCTGGA
CTTCCTAGTGCCTGGGGCTATGCCGCAAAATGGTCGCTAGGAGCTCTCAA
CCGAGATCGCAAACGATGCTCAAGTTCTCAGATCTTTTTTGTGTTTTGAT
GCTCAATTTCTTGACCTTGACTGGAAAGTTCGTATGCGCCACGGTAAACC
GCATGTGTGTACGACCTGTTGAAAGAATCCCTCGCCGGGATTCGAGCCGC
CTCCCTCCCCCACTGATATTCCTTGTTGTTCTCCTGTGGTTCCCGACCTG
CTCGTTGTAACGCTCGCGAAAACTAGGCGTATTGTGTTGTGTTTGCGTTC
GGCACCGTCTACAGGTCAGATGCTGCTCCCGCTCCGTGCAGCCGTACGTG
CTTGACCGTTTATGTCACGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCNNNNTTTCCGCCCCTTTACAGGTCATTTG
CTTTCTCCTCTCCTTTTTTTTTTTGTTTTTTTTCCGTTTATTTCCCCCCC
CCCCCCCCCCCTCCCGCCGTACGCCATGCCCGCTGGAGCGGCTTGCTTTT
TGTGCATTTTCTCGGTTCCCAATTTCTGTTGTTGCGGCCACCCGGTGTTC
CCTCGCTGAAAAACGTTTCGACGTCCGATCTCTTTCGTCCAATACATCGT
GGCGCGCACACAGTGAACGTCGCGTACGTTAATTTTTCCCTCTTCGTTTT
TCTCTCGTTTTTTTTTGTTTTCGTTTGCAGGAGATCAAGGGTTCCACGGC
GGCATTGGAAGCGGCAATTTCCAAAAACCACAGCAATCTCAGCGATAGAC
TCGACAAGCTCGAGGGGAAGTAAGAATAGCACCTAGGAGGTAGCGGCTTC
GCGGAGGAGGCAGACCCGGTGGGTCGAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1313:7676..10054-

>mRNA_Ecto-sp13_S_contig1313.2547.1 ID=mRNA_Ecto-sp13_S_contig1313.2547.1|Name=mRNA_Ecto-sp13_S_contig1313.2547.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=384bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1313:7676..10054- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTTCTATCAACACGCTCGCGAGAGTAGCATCGATGTCGGTGGGGAG
GGCGCCGGGGGCGTCCCGAAGGATCGCTACTGCCTCCGCGGCGGCGGCAC
GGCGCTTCCTGTCAACAACAACAAGCGAGGCCGCCGCCGCCGAGAAGCCT
ACCCCGCCGTCGCCACAGCCCACGCCCCCACCGGCGGCGGCGAAGACCAG
CAGCGGGGGTTCGTCTTTCCTGCAGCGACTTGCGGCATTTTTGACCGGGG
CTGGGGTGGGTTGCGGGGTCGGTTACTACCACCTGGCAACGGAGATCAAG
GGTTCCACGGCGGCATTGGAAGCGGCAATTTCCAAAAACCACAGCAATCT
CAGCGATAGACTCGACAAGCTCGAGGGGAAGTAA
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