mRNA_Ecto-sp13_S_contig13129.2546.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13129.2546.1
Unique NamemRNA_Ecto-sp13_S_contig13129.2546.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13129.2546.1 vs. uniprot
Match: A0A6H5KYW9_9PHAE (CULLIN_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYW9_9PHAE)

HSP 1 Score: 403 bits (1035), Expect = 1.420e-134
Identity = 195/197 (98.98%), Postives = 196/197 (99.49%), Query Frame = 1 
Query:    1 MAREAQKIISLEDGWCNNIKPNAINVLEDHLNRGFDKRTSQLFTPKDFMSTYTTCYDMCTQRSPYNWSEQLYDRHGETISQYLSGTVVNALREQHGEFLLKELVRRWSNHKIMNQWMQKFFQYLDRYYVKHHSLPSLKEAGLKHFKTLVYDVVKSTVVNAMLDVINKEREGTIIDRPLIGSCVELFESMGMGTLDSY 591
            MAREAQKII+LEDGW NNIKPNAINVLEDHLNRGFDKRTSQLFTPKDFMSTYTTCYDMCTQRSPYNWSEQLYDRHGETISQYLSGTVVNALREQHGEFLLKELVRRWSNHKIMNQWMQKFFQYLDRYYVKHHSLPSLKEAGLKHFKTLVYDVVKSTVVNAMLDVINKEREGTIIDRPLIGSCVELFESMGMGTLDSY
Sbjct:    1 MAREAQKIITLEDGWFNNIKPNAINVLEDHLNRGFDKRTSQLFTPKDFMSTYTTCYDMCTQRSPYNWSEQLYDRHGETISQYLSGTVVNALREQHGEFLLKELVRRWSNHKIMNQWMQKFFQYLDRYYVKHHSLPSLKEAGLKHFKTLVYDVVKSTVVNAMLDVINKEREGTIIDRPLIGSCVELFESMGMGTLDSY 197
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13129.2546.1 vs. uniprot
Match: A0A835YLK2_9STRA (Cullin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLK2_9STRA)

HSP 1 Score: 298 bits (762), Expect = 8.400e-94
Identity = 140/191 (73.30%), Postives = 161/191 (84.29%), Query Frame = 1 
Query:   19 KIISLEDGWCNNIKPNAINVLEDHLNRGFDKRTSQLFTPKDFMSTYTTCYDMCTQRSPYNWSEQLYDRHGETISQYLSGTVVNALREQHGEFLLKELVRRWSNHKIMNQWMQKFFQYLDRYYVKHHSLPSLKEAGLKHFKTLVYDVVKSTVVNAMLDVINKEREGTIIDRPLIGSCVELFESMGMGTLDSY 591
            ++I LEDGW   IK  AI+ LE  LN GF+K+T++LF P+ ++  YTTCY+MCTQRSPYNWSE LY RHGE IS YL+GTVV ALR +HGEFLLKELVRRWSNHKIMN WM KFF YLDRYYVKHH+LP+L EAGLKHFKTLVYDVVK   V AMLDVIN EREG +IDRPL+G+CV+LFESMGMGTL++Y
Sbjct:   10 RVIYLEDGW-GEIKGKAIDELEKLLNTGFEKKTTKLFGPRQYVDIYTTCYNMCTQRSPYNWSEHLYQRHGEVISAYLTGTVVPALRNKHGEFLLKELVRRWSNHKIMNDWMMKFFMYLDRYYVKHHNLPTLSEAGLKHFKTLVYDVVKGNAVRAMLDVINSEREGAVIDRPLLGACVDLFESMGMGTLEAY 199
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13129.2546.1 vs. uniprot
Match: F0XVV7_AURAN (CULLIN_2 domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XVV7_AURAN)

HSP 1 Score: 278 bits (710), Expect = 3.980e-86
Identity = 128/191 (67.02%), Postives = 159/191 (83.25%), Query Frame = 1 
Query:   19 KIISLEDGWCNNIKPNAINVLEDHLNRGFDKRTSQLFTPKDFMSTYTTCYDMCTQRSPYNWSEQLYDRHGETISQYLSGTVVNALREQHGEFLLKELVRRWSNHKIMNQWMQKFFQYLDRYYVKHHSLPSLKEAGLKHFKTLVYDVVKSTVVNAMLDVINKEREGTIIDRPLIGSCVELFESMGMGTLDSY 591
            KII+LE+GW N IK  AI+VLE+ LN GFD+++ +LF PK+++ TYTTCY+MCTQRSPYNWSEQLY RHGETI  YL+ TV+ ALR QH +FLL EL +RW+NHKIMN+WM+ FF YLDRYYVKHHSLP+L  AGLKHFKTLVY+ VK  VVNAM+ +I+ ER+  +IDR L+ +CVEL E+MGMG+LD+Y
Sbjct:    5 KIIALEEGWNNEIKAKAIDVLEEMLNNGFDQKSQRLFAPKEYVQTYTTCYNMCTQRSPYNWSEQLYQRHGETICDYLTKTVLPALRHQHNDFLLTELTKRWANHKIMNKWMRLFFMYLDRYYVKHHSLPTLDVAGLKHFKTLVYNEVKKDVVNAMIGLIDAERDEKLIDRGLVKNCVELLEAMGMGSLDAY 195
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13129.2546.1 vs. uniprot
Match: A0A7S2WAA5_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WAA5_9STRA)

HSP 1 Score: 275 bits (704), Expect = 2.870e-85
Identity = 126/193 (65.28%), Postives = 159/193 (82.38%), Query Frame = 1 
Query:   13 AQKIISLEDGWCNNIKPNAINVLEDHLNRGFDKRTSQLFTPKDFMSTYTTCYDMCTQRSPYNWSEQLYDRHGETISQYLSGTVVNALREQHGEFLLKELVRRWSNHKIMNQWMQKFFQYLDRYYVKHHSLPSLKEAGLKHFKTLVYDVVKSTVVNAMLDVINKEREGTIIDRPLIGSCVELFESMGMGTLDSY 591
            +Q II+L+DGW N IK  AI+ LE  LN G DK+ SQLF+P +++ TYTTCY+MCTQ+SPYNWS+QLY RHGETI  YLSGTV+ ALR++H  FLLKEL  RW NH+IMN+WMQ+FF YLDRYYVKHHSLPSL +AGL HFK L++D V+  V NAM+D+IN+ER+G +I+R L+ SCV LFE+MGMG+L++Y
Sbjct:    2 SQGIINLDDGWNNEIKVKAIDRLEAILNSGLDKQQSQLFSPTEYVQTYTTCYNMCTQKSPYNWSQQLYQRHGETIRNYLSGTVLPALRDKHDIFLLKELTARWGNHEIMNKWMQRFFMYLDRYYVKHHSLPSLMDAGLGHFKALIFDEVRRDVANAMIDLINQERDGAVIERGLVKSCVRLFEAMGMGSLEAY 194
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13129.2546.1 vs. uniprot
Match: A0A7S3JSF7_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JSF7_9STRA)

HSP 1 Score: 275 bits (704), Expect = 4.080e-85
Identity = 127/191 (66.49%), Postives = 154/191 (80.63%), Query Frame = 1 
Query:   19 KIISLEDGWCNNIKPNAINVLEDHLNRGFDKRTSQLFTPKDFMSTYTTCYDMCTQRSPYNWSEQLYDRHGETISQYLSGTVVNALREQHGEFLLKELVRRWSNHKIMNQWMQKFFQYLDRYYVKHHSLPSLKEAGLKHFKTLVYDVVKSTVVNAMLDVINKEREGTIIDRPLIGSCVELFESMGMGTLDSY 591
            KII  E+GW N IK  AI++LE+ LN GFD+R+ QLF PK+++ TYTTCY+MCTQRSPYNWSEQLY RHGETI  YL+ TV+ AL+ +  E+LLKEL  RW+NHKIMN+WMQKFF YLDRYYVKHHSLP+L  AGLKHFK LVY  VK   V A+L +I+ ER+G +IDR L+ +CVEL E+MGMG+LDSY
Sbjct:    5 KIIPFEEGWNNEIKAKAIDILEEMLNNGFDRRSQQLFAPKEYVQTYTTCYNMCTQRSPYNWSEQLYQRHGETICNYLNETVLPALKNKRSEYLLKELTERWNNHKIMNKWMQKFFMYLDRYYVKHHSLPTLDVAGLKHFKNLVYGEVKKEAVGAILTMIDTERDGAMIDRDLVKNCVELIEAMGMGSLDSY 195
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13129.2546.1 vs. uniprot
Match: A0A7S3ZYF8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZYF8_9STRA)

HSP 1 Score: 266 bits (679), Expect = 3.880e-84
Identity = 127/191 (66.49%), Postives = 153/191 (80.10%), Query Frame = 1 
Query:   19 KIISLEDGWCNNIKPNAINVLEDHLNRGFDKRTSQLFTPKDFMSTYTTCYDMCTQRSPYNWSEQLYDRHGETISQYLSGTVVNALREQHGEFLLKELVRRWSNHKIMNQWMQKFFQYLDRYYVKHHSLPSLKEAGLKHFKTLVYDVVKSTVVNAMLDVINKEREGTIIDRPLIGSCVELFESMGMGTLDSY 591
            KII+LE+GW N IK  AI+VLED LN G DK   +LF PK+++ TYTTCY+MCTQRSPYNWSEQLY RHGETI  YLS TV+ AL+++ G  LL EL  RWSNHKIMN+WM+ FF YLDRYYVKHHSLP+L  AGLKHFKTLVY+ VK  VVNAM+ +I+ ER+  +IDR L+ + VEL E+MGMG+LD+Y
Sbjct:    5 KIIALEEGWNNEIKAKAIDVLEDMLNTGLDKNKPRLFDPKEYVQTYTTCYNMCTQRSPYNWSEQLYQRHGETICDYLSKTVLPALKQKSGNALLTELTVRWSNHKIMNKWMRLFFMYLDRYYVKHHSLPTLDVAGLKHFKTLVYNEVKKDVVNAMIALIDAERDQALIDRALVKNTVELLEAMGMGSLDAY 195
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13129.2546.1 vs. uniprot
Match: A0A8J2SP16_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SP16_9STRA)

HSP 1 Score: 266 bits (679), Expect = 1.540e-81
Identity = 127/191 (66.49%), Postives = 153/191 (80.10%), Query Frame = 1 
Query:   19 KIISLEDGWCNNIKPNAINVLEDHLNRGFDKRTSQLFTPKDFMSTYTTCYDMCTQRSPYNWSEQLYDRHGETISQYLSGTVVNALREQHGEFLLKELVRRWSNHKIMNQWMQKFFQYLDRYYVKHHSLPSLKEAGLKHFKTLVYDVVKSTVVNAMLDVINKEREGTIIDRPLIGSCVELFESMGMGTLDSY 591
            KII+LE+GW N IK  AI+VLED LN G DK   +LF PK+++ TYTTCY+MCTQRSPYNWSEQLY RHGETI  YLS TV+ AL+++ G  LL EL  RWSNHKIMN+WM+ FF YLDRYYVKHHSLP+L  AGLKHFKTLVY+ VK  VVNAM+ +I+ ER+  +IDR L+ + VEL E+MGMG+LD+Y
Sbjct:    5 KIIALEEGWNNEIKAKAIDVLEDMLNTGLDKNKPRLFDPKEYVQTYTTCYNMCTQRSPYNWSEQLYQRHGETICDYLSKTVLPALKQKSGNALLTELTVRWSNHKIMNKWMRLFFMYLDRYYVKHHSLPTLDVAGLKHFKTLVYNEVKKDVVNAMIALIDAERDQALIDRALVKNTVELLEAMGMGSLDAY 195
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13129.2546.1 vs. uniprot
Match: A0A7S4ILC2_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4ILC2_9STRA)

HSP 1 Score: 251 bits (641), Expect = 5.140e-76
Identity = 119/194 (61.34%), Postives = 151/194 (77.84%), Query Frame = 1 
Query:   19 KIISLEDGWCNNIKPNAINVLEDHLNRGFDKRTSQLFTPKDFMSTYTTCYDMCTQRSPYNWSEQLYDRHGETISQYLSGTVVNALRE---QHGEFLLKELVRRWSNHKIMNQWMQKFFQYLDRYYVKHHSLPSLKEAGLKHFKTLVYDVVKSTVVNAMLDVINKEREGTIIDRPLIGSCVELFESMGMGTLDSY 591
            +II LE+GW + IK  AI++LED L+ G     S +F P+++++ YTTCYDMCTQRSPYNWS+ LY RHGETI +YL+ TV+ ALRE   Q G  LL EL  RWSNH+IMN+W++KFF YLDRYYVKHHSLP+L +AGLKHFKT VYD +K     A+L +I++EREG IID+ L+ S +EL+ESMGMGTLD+Y
Sbjct:    8 RIIRLEEGWNDEIKKKAIDILEDMLDNGIKSGRSSMFGPREYVAIYTTCYDMCTQRSPYNWSKDLYQRHGETIERYLTSTVLPALREKTGQGGTILLTELQHRWSNHQIMNKWLKKFFTYLDRYYVKHHSLPTLSQAGLKHFKTHVYDEMKRDTTAAILTLIDEEREGEIIDKTLVKSIIELYESMGMGTLDAY 201
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13129.2546.1 vs. uniprot
Match: A0A7S2UHW6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UHW6_9STRA)

HSP 1 Score: 250 bits (638), Expect = 1.440e-75
Identity = 119/195 (61.03%), Postives = 151/195 (77.44%), Query Frame = 1 
Query:   16 QKIISLEDGWCNNIKPNAINVLEDHLNRGFDKRTSQLFTPKDFMSTYTTCYDMCTQRSPYNWSEQLYDRHGETISQYLSGTVVNALRE---QHGEFLLKELVRRWSNHKIMNQWMQKFFQYLDRYYVKHHSLPSLKEAGLKHFKTLVYDVVKSTVVNAMLDVINKEREGTIIDRPLIGSCVELFESMGMGTLDSY 591
            Q+II L+ GW   IK  AI+VLED LN G     + +F PK++++ YT CYDMCTQRSPYNWS +LY+RHGETI QYL+ TV+ ALRE   Q G  LL EL  RW+NH+IMN+W++KFF YLDRYYVKHHSLP+L +AGLKHF+T +YD +KS    A+L +I++ER+G IID+ LI S VEL+ESMGMG+LD+Y
Sbjct:   10 QRIIQLQQGWDEEIKVKAIDVLEDMLNGGLKSGKANMFAPKEYVNIYTVCYDMCTQRSPYNWSRELYNRHGETIEQYLTSTVLPALREKTGQGGTILLTELQARWTNHQIMNKWLKKFFTYLDRYYVKHHSLPTLSQAGLKHFRTHIYDEMKSDTTAAILALIDEERDGEIIDKTLIKSSVELYESMGMGSLDAY 204
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13129.2546.1 vs. uniprot
Match: A0A7R9ZBG0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZBG0_9STRA)

HSP 1 Score: 245 bits (625), Expect = 4.330e-75
Identity = 119/194 (61.34%), Postives = 150/194 (77.32%), Query Frame = 1 
Query:   19 KIISLEDGWCNNIKPNAINVLEDHLNRGFDKRTSQLFTPKDFMSTYTTCYDMCTQRSPYNWSEQLYDRHGETISQYLSGTVVNALRE---QHGEFLLKELVRRWSNHKIMNQWMQKFFQYLDRYYVKHHSLPSLKEAGLKHFKTLVYDVVKSTVVNAMLDVINKEREGTIIDRPLIGSCVELFESMGMGTLDSY 591
            +II LE+GW + IK  AI+VLE+ L+ G     S +F P+++++ YTTCYDMCTQRSPYNWS  LY RHGETI +YL+ TV+ ALRE   Q G  LL EL  RWSNH+IMN+W++KFF YLDRYYVKHHSLP+L +AGL+HFKT VYD +K     A+L +I++EREG IID+ L+ S VEL+ESMGMGTLD+Y
Sbjct:   42 RIIRLEEGWNDEIKKKAIDVLEEMLDGGIKSGKSNMFGPREYVAIYTTCYDMCTQRSPYNWSRDLYLRHGETIERYLTITVLPALREKTGQGGTILLTELQHRWSNHQIMNKWLKKFFTYLDRYYVKHHSLPTLSQAGLRHFKTHVYDEMKRDTTAAILTLIDEEREGEIIDKTLVKSIVELYESMGMGTLDAY 235
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13129.2546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KYW9_9PHAE1.420e-13498.98CULLIN_2 domain-containing protein n=2 Tax=Ectocar... [more]
A0A835YLK2_9STRA8.400e-9473.30Cullin n=1 Tax=Tribonema minus TaxID=303371 RepID=... [more]
F0XVV7_AURAN3.980e-8667.02CULLIN_2 domain-containing protein n=1 Tax=Aureoco... [more]
A0A7S2WAA5_9STRA2.870e-8565.28Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A7S3JSF7_9STRA4.080e-8566.49Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S3ZYF8_9STRA3.880e-8466.49Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A8J2SP16_9STRA1.540e-8166.49Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S4ILC2_9STRA5.140e-7661.34Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S2UHW6_9STRA1.440e-7561.03Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7R9ZBG0_9STRA4.330e-7561.34Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13129contigEcto-sp13_S_contig13129:809..4818 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score409.8
Seed ortholog evalue7e-112
Seed eggNOG ortholog2880.D7FY17
Model size591
KEGG koko:K03347
KEGG Pathwayko04110,ko04111,ko04114,ko04120,ko04141,ko04310,ko04340,ko04341,ko04350,ko04710,ko05168,ko05200,map04110,map04111,map04114,map04120,map04141,map04310,map04340,map04341,map04350,map04710,map05168,map05200
KEGG ModuleM00379,M00380,M00381,M00382,M00387,M00407,M00411
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.ubiquitin protein ligase binding
EggNOG OGsCOG5647@1,KOG2166@2759
Ec32 ortholog descriptionCullin repeat-like-containing domain
Ec32 orthologEc-09_000430.1
Cds size591
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13129.2546.1prot_Ecto-sp13_S_contig13129.2546.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13129 809..4818 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462703.0141995-CDS-Ecto-sp13_S_contig13129:808..9071681462703.0141995-CDS-Ecto-sp13_S_contig13129:808..907Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13129 809..907 +
1681462703.0243664-CDS-Ecto-sp13_S_contig13129:2009..21531681462703.0243664-CDS-Ecto-sp13_S_contig13129:2009..2153Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13129 2010..2153 +
1681462703.0328379-CDS-Ecto-sp13_S_contig13129:2849..29831681462703.0328379-CDS-Ecto-sp13_S_contig13129:2849..2983Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13129 2850..2983 +
1681462703.0403426-CDS-Ecto-sp13_S_contig13129:3431..35191681462703.0403426-CDS-Ecto-sp13_S_contig13129:3431..3519Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13129 3432..3519 +
1681462703.0479755-CDS-Ecto-sp13_S_contig13129:4399..44731681462703.0479755-CDS-Ecto-sp13_S_contig13129:4399..4473Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13129 4400..4473 +
1681462703.0573292-CDS-Ecto-sp13_S_contig13129:4766..48181681462703.0573292-CDS-Ecto-sp13_S_contig13129:4766..4818Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13129 4767..4818 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13129.2546.1

>prot_Ecto-sp13_S_contig13129.2546.1 ID=prot_Ecto-sp13_S_contig13129.2546.1|Name=mRNA_Ecto-sp13_S_contig13129.2546.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=197bp
MAREAQKIISLEDGWCNNIKPNAINVLEDHLNRGFDKRTSQLFTPKDFMS
TYTTCYDMCTQRSPYNWSEQLYDRHGETISQYLSGTVVNALREQHGEFLL
KELVRRWSNHKIMNQWMQKFFQYLDRYYVKHHSLPSLKEAGLKHFKTLVY
DVVKSTVVNAMLDVINKEREGTIIDRPLIGSCVELFESMGMGTLDSY
back to top

mRNA from alignment at Ecto-sp13_S_contig13129:809..4818+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13129.2546.1 ID=mRNA_Ecto-sp13_S_contig13129.2546.1|Name=mRNA_Ecto-sp13_S_contig13129.2546.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4010bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13129:809..4818+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTCGAGAAGCGCAAAAGATTATCTCCCTCGAGGACGGGTGGTGCAA
CAACATTAAGCCCAATGCCATCAACGTGCTGGAGGACCACCTAAATAGGG
TAAGTAAAGATCCTTTGGGAAAAGGTCATACAGCCTATAGGTTAACGCAA
CCATATTTTTCTGCGCGAAATAACATTTGAGCACACGTAGGGCGGACGCA
AGTAACGGGTTTCGGCTGTATGACAACAGAGAACCGCTCTGTGGAACAAT
GAGAGAGAGATGAGATGTGGCAGGGCAAGCAGGGTATCGGACAGCCACCG
TGTGGCAGGGTATGACGAAATACGCCTCGGTTTTGTTTTGCTCTCGAGGC
ACTGCTGTTGTTGGTGGTTGGGACGTGATGACGACGCCGGTCGGGGTGCG
ACAGCCAGCCCCGGCGCGTTCGCGCCTTGTTGATATCCAGGCGAAAACCT
TGCACACACCTGTATGGATGCGAAGATTCGGAGAAGGGGTGAAGGCTTTA
GCTTGACTGCGCCACAACCAGGGGGGGACGAAATGGACGAAAAAGGGGGT
GGCGGTTGTTTTGAGAAGATTTCGTCGAGAGCTCTCATACGAGACAGGGC
ACTGCTTGGGCACTTTTTGTGCTAACGAACTTTTTGATCCTCACGGGGAA
TTCTGCGTTTTTTGTGCACAGGACAGACTCCTGTCCCGCGGTAGTCCTGC
GTGTAGAGCATCCAACACCGCCCGGGAAGCTTTTTGTTGTGTGCTGCACA
GCCCTCTGTCGCCCGACAAACACAAATTGATCGTTGGGGTTTTCACCTGG
GAGGCATGCATGCCACGTTGTTCTTGTGGCCTCTGCCGTCGCCACCATCC
ATCACCACCCTGTTTTCTCTGTCGTTTCACGACGGTCGACGACAATCGTT
TTCGTAAAAACAACGAAACAATGGAAAAAAGGTCCTGCGTGACGTTCCTC
TTGTGTGGCCCCGGCTGATGCGTCAGGTATACACGCCGAAAGGCCCGTAA
ACAGGCGCCGGAATAGATGAAACGAACACACACACGCACAAACACACACA
CACTGCAGCTCGTTGTGCTTGATAAGTGTGTGTTGGCCTACGTGATGGTA
GGTAAGATATGCTGTGGGCGCTAATTTTCGTGACTTTTTTTTTGACCGTC
GACGACTTGAAATAGGTGTACTAATATGACATGTATTTTTTTTGTGACCA
GGGTTTCGACAAGAGGACCTCGCAGCTGTTCACGCCGAAGGACTTCATGA
GCACCTACACAACGTGTTACGACATGTGCACCCAGCGATCTCCCTACAAC
TGGTCGGAGCAGCTCTACGACAGACACGGGGAGACCATCTCGCAGGTTTG
TCGGTTGCGGTGGCGAGACAGTACCGACGTGACACAAGATACCACACCCC
CGTCACCGATTGGGACCGATTTTTAGTTCTCGATTACTCAATCCAAGGCA
GAGACGGCGGCGGTGCCGAAGAAGGACGGCTTTGGAACCACCTCGTCGAG
ATGTTTCCGAAAGCTTGTCACATGATTGTTTGGCATCCTCTTCTTTGTGG
AGGATTCGAGGGTTGAAAATCGGCCAAGGGGGGGATGTTGTATCTTGAGT
CATGCCACCTACGGTAGTCGGCAGGTGTCGTTCATCCGCTGCTACTGTGT
GTTGCAAAACTACGCCTGGCGTGGTCGGTTCTTTGATGACGTGTTCTCGG
AAGGATGGTGGTCTCGCGTTCTCGCCAGCCAAACAGAGTGCAGAAAACCA
TTTTGCATTTTTGAATCGAGACGTTGATGTGTTGTGGATGTACGACGGTG
TAGATGCGAAAACAAAGTATATATGTTTGACTTTTTTCCCACGAGTTACT
GTCGCATGTGCTCATTTTTCATGTGCACAGTACAGAGGTCGAAAAACTAC
GCCCGTTAAGTGGACGTGCACGACTCAGCTACTGTGAAGCAGAACGGCTC
AAGATACACGTGTTCGATCCTTCTCGTATGTTGTTTTTGCGATCGATCTG
ATCTGTCTGCTCGATTTCATGGCGATGACGTCACGACGCAGTACCTGTCG
GGGACGGTGGTGAACGCACTGAGGGAGCAGCACGGAGAGTTCCTTCTCAA
GGAGCTCGTGCGAAGGTGGTCCAACCACAAGATCATGAACCAGTGGATGC
AGAAATTCTTTCAGTACCTGGACAGGTGAGCCGGTTGTTCGTTTTTCCTG
GTATGGTAGGTATGTAGGTAGGAAATAAATAGGGCCGCCTTTGAGCGCGA
GAAGTTAAGTTCGTGAAAAAATGGAACAGGGAGGGGGGTACGCAGAACCC
TTATTTACAACCAGAACCCAACTCCCCCGATTGCATGCTTTATCCAAAAT
GTTCACTTGAACAAAAAACCCTGCGGAATGCTACGTACAGTATCTGCCGC
CATCGCGGCTCGCGAACGCCATGGTTTGTCGCTCTCATGATTTTGTTTGG
ATATTGTTTTTGACAACATACATACAATCTCGAAAGACTGTAGTACCCGT
TCGAGATCTTACCACAGGTTAGTCGAAGGGAATGTGTTGAAATCATAAAT
TTTTCTTGCGTGCGTACCACAAACTTGCATTTTTTTTTTTCGTTCCGTGT
GATTTACCTCGAATGCGATGCAGGTACTACGTGAAGCATCACTCGTTACC
ATCGTTGAAGGAGGCGGGGCTGAAGCACTTCAAGACGCTCGTCTACGATG
TCGTCAAGTCGGTGCGTACTCGTCATGCCGCCATGCTGTTGTTGATTTTG
GTGTCCAGGGTTGTTTTTTGGTAATACTTTTTGTTCAAGCGTGCTGTGCC
TTTCCTGTCGTGCCTTTGGCTTTCCCAAAACACAACGCTAAAACATGCTA
TGGTTTGCGACTTCTGAAGATACAATCGCACACACCATCTCAGTGGAGTC
TGGACATGAGAGAGGGTGGCGAGCACGGGGGTGTGCTTGTTGGTTGTCTT
GTGCTGGGCACGGTCGATTTGTTGCGGGGAGGGCGCCGGAGGGTCCGAGG
GGTTGAAAATCTGTGATGTTAATAACTTGGTGTGCATGTATCTGGATTGG
CTGAGAAGCGCTTCCAGATAACCCCGGTCTGCAACAAGCATCGATGCGGT
GCGCGCTTTTCCCGCTTCAACACGCGTACGTTTAGGGGAAACCTCGGGGA
CACTGTTCAACTGTCCCCGCACCTTACCTGCAGCAACCGGGGGGGACTGC
GTGGTGGGGTACTCGACAACACATCTCTCTTTAGTTGGTTTTCTCACTCG
CAGCAGCAGCCAAGGCTTTTTTTGTGGATTGCTATTTAGTACCATGGTAT
ATACTTGGCCTTACATGTCGAATTCATTTCCTGTCTCTTTTCGGGCTGCG
GTGTTTTCCCGCGGTTCTCCTGACTGGACTGCGGTTTTTTCCACCTTCGT
CGCCGTTGTTGCTGCTGTCCCTCGCGTTCTGTCAGCGGTATTTTTCCACG
GTTCTCTCGACCTGACTGCGGTTATTCCCACCTTCGTCGTTGTTGTTGTT
GTTGCTGCTGCTGCCTGCCCCTCGTGCTTTCGGGCTCGGTCGTGTGCTGT
GTGCTGTACCATGGTTACGTGCTTGTTCTTCTTTCTCGTAGACGGTGGTG
AACGCGATGCTGGACGTCATCAACAAGGAGAGGGAAGGGACGATCATCGA
CCGACCGCTCATTGGGTGAGGAGAGGAGAGAGGGACACGGGAGAGAAGAT
GGGCAACAATTTTGTTGCTACAGTGAACGAGACATGGTTTGCGATCATGG
CAAAGACACACACAATCACAGAGAAAGAGAAAGAGAGAGAGAGAGAGGGA
GAGAGAGAGAGAGAGCGGGAGGGGGGGGGGGGAGAGATAGATATACATGG
AGAGAGATGCAGAATATGCAACCTTATTTTTTTCGTTTTTCGTATATTTA
TATCTTTATTTTTTCTTCGTTCTTCGTATATTTACATCATTATTTCATGT
TTTGTCAGGTCGTGCGTGGAGCTGTTTGAGTCGATGGGAATGGGTACGCT
GGACTCGTAC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13129:809..4818+

>mRNA_Ecto-sp13_S_contig13129.2546.1 ID=mRNA_Ecto-sp13_S_contig13129.2546.1|Name=mRNA_Ecto-sp13_S_contig13129.2546.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=591bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13129:809..4818+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTCGAGAAGCGCAAAAGATTATCTCCCTCGAGGACGGGTGGTGCAA
CAACATTAAGCCCAATGCCATCAACGTGCTGGAGGACCACCTAAATAGGG
GTTTCGACAAGAGGACCTCGCAGCTGTTCACGCCGAAGGACTTCATGAGC
ACCTACACAACGTGTTACGACATGTGCACCCAGCGATCTCCCTACAACTG
GTCGGAGCAGCTCTACGACAGACACGGGGAGACCATCTCGCAGTACCTGT
CGGGGACGGTGGTGAACGCACTGAGGGAGCAGCACGGAGAGTTCCTTCTC
AAGGAGCTCGTGCGAAGGTGGTCCAACCACAAGATCATGAACCAGTGGAT
GCAGAAATTCTTTCAGTACCTGGACAGGTACTACGTGAAGCATCACTCGT
TACCATCGTTGAAGGAGGCGGGGCTGAAGCACTTCAAGACGCTCGTCTAC
GATGTCGTCAAGTCGACGGTGGTGAACGCGATGCTGGACGTCATCAACAA
GGAGAGGGAAGGGACGATCATCGACCGACCGCTCATTGGGTCGTGCGTGG
AGCTGTTTGAGTCGATGGGAATGGGTACGCTGGACTCGTAC
back to top