mRNA_Ecto-sp13_S_contig13125.2545.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13125.2545.1
Unique NamemRNA_Ecto-sp13_S_contig13125.2545.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13125.2545.1 vs. uniprot
Match: D7FQU1_ECTSI (Intraflagellar transport particle protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQU1_ECTSI)

HSP 1 Score: 270 bits (689), Expect = 5.510e-83
Identity = 142/172 (82.56%), Postives = 143/172 (83.14%), Query Frame = 1 
Query:  151 MGRMMTGAVPGTALRASGEARPMTSVSGAGYQSKKQGTFDPLNQGHGPAPALAEKSDNGPEYLAKEMERQVHAMMEESATACVSGDFSQALEKAKEADKKEKALCKQRERHGLVDQINLDLTYAVCFNLANCYHQNGMKKEALREYSAIVKNKQYPQAGRLRANMGNIYYEQ 666
            MGRMMTG VPGTALRASGEARPMTSVSGAGYQSKKQGTFDPLNQGHGPAPALAEKSDNGPEYLAKEMERQ                           DKKEKALCKQRER+GLVDQINLDLTYAVCFNLANCYHQNGMKKEALREY AIVKNKQYPQAGRLRANMGNIYYEQ
Sbjct:    1 MGRMMTGTVPGTALRASGEARPMTSVSGAGYQSKKQGTFDPLNQGHGPAPALAEKSDNGPEYLAKEMERQ---------------------------DKKEKALCKQRERYGLVDQINLDLTYAVCFNLANCYHQNGMKKEALREYGAIVKNKQYPQAGRLRANMGNIYYEQ 145
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13125.2545.1 vs. uniprot
Match: A0A7S1C9E8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C9E8_9STRA)

HSP 1 Score: 214 bits (545), Expect = 1.200e-61
Identity = 122/178 (68.54%), Postives = 135/178 (75.84%), Query Frame = 1 
Query:  154 GRMMTGAVPGTALRASGEA---RPMTSVSGAGYQSKKQG---TFDPLNQG-HGPAPALAEKSDNGPEYLAKEMERQVHAMMEESATACVSGDFSQALEKAKEADKKEKALCKQRERHGLVDQINLDLTYAVCFNLANCYHQNGMKKEALREYSAIVKNKQYPQAGRLRANMGNIYYEQ 666
            GRMMTG + G    ASG     RPMTSV GAGYQS       +FDPLNQ   GPAP LAEK+DN PE LAKEME+QV+A++E SA A VSGD  QALE+AKEA KKE+ L K RE +GLVDQINLDLTYAVCFNLAN YH NGM  EAL  YS IVKNKQYPQ+GRLR NMGNIYY++
Sbjct:   47 GRMMTGRMTGRVGTASGGGDGPRPMTSVKGAGYQSDPSSAKPSFDPLNQAARGPAPKLAEKADNSPEDLAKEMEKQVNALIEASADAAVSGDAVQALERAKEAGKKERQLQKHRESNGLVDQINLDLTYAVCFNLANAYHLNGMFAEALNTYSLIVKNKQYPQSGRLRVNMGNIYYQE 224
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13125.2545.1 vs. uniprot
Match: F0YAE8_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAE8_AURAN)

HSP 1 Score: 206 bits (525), Expect = 1.270e-59
Identity = 105/159 (66.04%), Postives = 123/159 (77.36%), Query Frame = 1 
Query:  202 GEARPMTSVSGAGYQSKKQGT----FDPLNQGHGPAPALAEKSDNGPEYLAKEMERQVHAMMEESATACVSGDFSQALEKAKEADKKEKALCKQRERHGLVDQINLDLTYAVCFNLANCYHQNGMKKEALREYSAIVKNKQYPQAGRLRANMGNIYYEQ 666
            GE RPMTS SGAG+ +K+ G     FDPL QG GPAP LAE++DN PE  A+E E+QVHA++E SA A + G+   ALEKAK+A K+E+ALCK RE HGLVDQIN+DLTYAVCFNLA+ YH   M  EAL  YS +VKNKQYPQ+GRLR NMGNIYYEQ
Sbjct:    3 GEVRPMTSTSGAGFSTKQGGAAARGFDPLGQGRGPAPPLAERADNSPEDQAREFEKQVHALVEASAAAALEGNHDAALEKAKDAGKRERALCKHREAHGLVDQINIDLTYAVCFNLAHAYHSARMHDEALHTYSLLVKNKQYPQSGRLRVNMGNIYYEQ 161
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13125.2545.1 vs. uniprot
Match: A0A7S2R9F0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R9F0_9STRA)

HSP 1 Score: 203 bits (516), Expect = 4.480e-57
Identity = 122/218 (55.96%), Postives = 143/218 (65.60%), Query Frame = 1 
Query:   34 HNTYPGTSALGTAGAMRSSXXXXXXXXXXXXXGRPPPSQMGRMMTGAV------PGTALRASGEARPMTSVSGAGYQSKKQGTFDPLNQ-GHGPAPALAEKSDNGPEYLAKEMERQVHAMMEESATACVSGDFSQALEKAKEADKKEKALCKQRERHGLVDQINLDLTYAVCFNLANCYHQNGMKKEALREYSAIVKNKQYPQAGRLRANMGNIYYEQ 666
            H+  PGTS     G M +S                     GRMMTG +      PGTA+     +RPMTSVSG GY SK+   FDPLNQ   GPAPALAEK+DN PE LA+EME+QVH+++EESA A    D + ALE A+EA KKE+ALCK RE  GLVDQ+NLDLTY+V FNLA+ YH+N M  EAL  YS +VKNKQY  +GRLR NMGNIYYEQ
Sbjct:   57 HSKPPGTSLAAAGGRMGTSMMG------------------GRMMTGQMMSRMGAPGTAMGGQ-SSRPMTSVSGTGY-SKQPKQFDPLNQQSRGPAPALAEKADNSPEDLAREMEKQVHSLIEESAAAASKKDLNLALEHAREAGKKERALCKHREAKGLVDQMNLDLTYSVVFNLASAYHKNRMYDEALNSYSLLVKNKQYANSGRLRVNMGNIYYEQ 254
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13125.2545.1 vs. uniprot
Match: A0A7S3XYV1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XYV1_HETAK)

HSP 1 Score: 191 bits (484), Expect = 1.360e-53
Identity = 97/134 (72.39%), Postives = 109/134 (81.34%), Query Frame = 1 
Query:  265 FDPLNQGHGPAPALAEKSDNGPEYLAKEMERQVHAMMEESATACVSGDFSQALEKAKEADKKEKALCKQRERHGLVDQINLDLTYAVCFNLANCYHQNGMKKEALREYSAIVKNKQYPQAGRLRANMGNIYYEQ 666
            FDPL Q  GPAP LAEK+DN PE  AK+ME+QV+ ++EESA A    DF+ ALE+AKEA K+E+ALCK RE +GLVDQINLDLTYAVCFNLAN YHQNGM  EAL  YS IVKNK YPQ+GRLR NMGNIYYEQ
Sbjct:   14 FDPLGQNRGPAPPLAEKADNSPEDKAKDMEKQVNRLIEESAAAGARRDFAAALERAKEAGKRERALCKHREANGLVDQINLDLTYAVCFNLANAYHQNGMYDEALHTYSLIVKNKTYPQSGRLRVNMGNIYYEQ 147
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13125.2545.1 vs. uniprot
Match: A0A8J2S308_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S308_9STRA)

HSP 1 Score: 192 bits (488), Expect = 2.200e-53
Identity = 102/167 (61.08%), Postives = 123/167 (73.65%), Query Frame = 1 
Query:  190 LRASG--EARPMTSVSGAGYQSK------KQGTFDPLNQGHGPAPALAEKSDNGPEYLAKEMERQVHAMMEESATACVSGDFSQALEKAKEADKKEKALCKQRERHGLVDQINLDLTYAVCFNLANCYHQNGMKKEALREYSAIVKNKQYPQAGRLRANMGNIYYEQ 666
            LR +G  E RPMTS +G+G+ SK      +   FDPLNQG GPAP LA++ DN  E  A+E E+QVHA++E SA   + GD   ALEKAK+A K+E+ALCK RE +GLVDQIN+DLTYAVCFNLA+ YH   M  EAL  YS +VKNKQYPQ+GRLR NMGNIY+EQ
Sbjct:   45 LRTAGGTEVRPMTSTTGSGFSSKPGSSLGRPANFDPLNQGRGPAPPLAKREDNSAEDKAREYEKQVHALVEASADLALKGDADGALEKAKDAGKRERALCKHREANGLVDQINIDLTYAVCFNLAHAYHGARMHDEALHTYSLLVKNKQYPQSGRLRVNMGNIYFEQ 211
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13125.2545.1 vs. uniprot
Match: A0A7S2SE40_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SE40_9STRA)

HSP 1 Score: 187 bits (475), Expect = 2.580e-51
Identity = 106/181 (58.56%), Postives = 136/181 (75.14%), Query Frame = 1 
Query:  148 QMG-RMMTGAVPGTALRASGEARPMTSVSGAGYQS------KKQGTFDPLNQGH-GPAPALAEKSDNGPEYLAKEMERQVHAMMEESATACVSGDFSQALEKAKEADKKEKALCKQRERHGLVDQINLDLTYAVCFNLANCYHQNGMKKEALREYSAIVKNKQYPQAGRLRANMGNIYYEQ 666
            QMG R+MTG       + + EARPMTSV+GAGY S       +QG FDPLNQ + GPAPALA+KS+N PE  AKE+E+QV+ ++E+SA A V+  +  ALEKAKE  +KE+ LCKQRE+HGL +QIN++LTY+V FNLAN +  NGM  +A+ + S IVKNKQYPQ+GRLR NMGNIY++Q
Sbjct:   59 QMGTRLMTGQ------QNNSEARPMTSVNGAGYTSDLSAGGSRQG-FDPLNQANRGPAPALAQKSENSPEERAKEIEKQVNTLLEQSAEAAVAKQYMGALEKAKECARKERQLCKQREQHGLAEQINMELTYSVSFNLANAFALNGMYSDAINQLSMIVKNKQYPQSGRLRVNMGNIYFKQ 232
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13125.2545.1 vs. uniprot
Match: A0A7S3GJC5_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3GJC5_9EUKA)

HSP 1 Score: 182 bits (463), Expect = 4.400e-51
Identity = 101/183 (55.19%), Postives = 130/183 (71.04%), Query Frame = 1 
Query:  130 GRPPPSQMGRMM--TGAVPGTALRASGEARPMTSVSGAGYQSKKQGT-FDPLNQGH-GPAPALAEKSDNGPEYLAKEMERQVHAMMEESATACVSGDFSQALEKAKEADKKEKALCKQRERHGLVDQINLDLTYAVCFNLANCYHQNGMKKEALREYSAIVKNKQYPQAGRLRANMGNIYYEQ 666
            G PPPS+ G     TGAVP       G  RPMTS+  AG+ S+  G  FDPL QG+ GPAPAL +KS++ PE   +E E++++ +++ESA     G  + AL+KAKEA +KE+ LCKQRE+H LVD IN+DLTY+VCFNLAN YH N M +EAL  Y+ IVKNKQY Q+GRLR NMGN+++EQ
Sbjct:   64 GAPPPSRFGAXXPATGAVP----EDEGPVRPMTSIKAAGFSSRDDGRGFDPLKQGNKGPAPALQKKSESSPEEEMREFEKKINHLIDESAILQQKGQLAAALDKAKEAMRKERQLCKQREQHNLVDMINIDLTYSVCFNLANQYHANKMYQEALSTYNLIVKNKQYAQSGRLRVNMGNVFFEQ 242
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13125.2545.1 vs. uniprot
Match: A0A835Z9Y6_9STRA (Intraflagellar transport particle protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9Y6_9STRA)

HSP 1 Score: 185 bits (469), Expect = 6.570e-51
Identity = 108/178 (60.67%), Postives = 124/178 (69.66%), Query Frame = 1 
Query:  169 GAVPGTALRASG--------EARPMTSVSGAGYQSKKQG--TFDPLNQGHGPAPALAEKSDNGPEYLAKEMERQVHAMMEESATACVSGDFSQALEKAKEADKKEKALCKQRERHGLVDQ--INLDLTYAVCFNLANCYHQNGMKKEALREYSAIVKNKQYPQAGRLRANMGNIYYEQ 666
            G  PGT++R  G        EARPMTSV+GAGYQSKK G   FDPLNQG GPAPALAEK++N PE +AKEMERQ                         EADK+E+ALCK RER+G  DQ  +NLDLTYAV FNLA  YH  G++KEALREYSAIV+N+QYPQAGRLRANMGNI++EQ
Sbjct:    2 GGAPGTSMRGGGTANGAGGGEARPMTSVAGAGYQSKKGGGAAFDPLNQGRGPAPALAEKANNSPEDMAKEMERQ-------------------------EADKRERALCKFRERNGKGDQAIVNLDLTYAVAFNLAARYHGAGLRKEALREYSAIVRNRQYPQAGRLRANMGNIFFEQ 154
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13125.2545.1 vs. uniprot
Match: A0A7S3HMA5_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HMA5_9STRA)

HSP 1 Score: 184 bits (468), Expect = 1.940e-50
Identity = 99/149 (66.44%), Postives = 114/149 (76.51%), Query Frame = 1 
Query:  202 GEARPMTSVSGAGYQS--KKQGTFDPLNQGHGPAPALAEKSDNGPEYLAKEMERQVHAMMEESATACVSGDFSQALEKAKEADKKEKALCKQRERHGLVDQINLDLTYAVCFNLANCYHQNGMKKEALREYSAIVKNKQYPQAGRLRAN 642
            GEARPMTSVSGAGY+   K   +FDPLN G GPAP LAEK+DN  E  AKEME++VH ++E SA A V+ D  +ALEKAKEA K E+ALCK RE H L +QINLDLTYA+CFNLAN Y+ N M +EAL  Y  IVKNKQYPQ+GRLR N
Sbjct:   78 GEARPMTSVSGAGYKGNLKDNKSFDPLNIGKGPAPPLAEKADNSSEDKAKEMEKKVHRLIEASADAVVAKDMLRALEKAKEAGKAERALCKFRESHNLAEQINLDLTYAICFNLANAYYHNKMYEEALNTYQLIVKNKQYPQSGRLRVN 226
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13125.2545.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQU1_ECTSI5.510e-8382.56Intraflagellar transport particle protein n=2 Tax=... [more]
A0A7S1C9E8_9STRA1.200e-6168.54Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
F0YAE8_AURAN1.270e-5966.04Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A7S2R9F0_9STRA4.480e-5755.96Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3XYV1_HETAK1.360e-5372.39Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A8J2S308_9STRA2.200e-5361.08Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2SE40_9STRA2.580e-5158.56Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A7S3GJC5_9EUKA4.400e-5155.19Hypothetical protein n=1 Tax=Palpitomonas bilix Ta... [more]
A0A835Z9Y6_9STRA6.570e-5160.67Intraflagellar transport particle protein n=1 Tax=... [more]
A0A7S3HMA5_9STRA1.940e-5066.44Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13125contigEcto-sp13_S_contig13125:1906..3870 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score275.0
Seed ortholog evalue3e-71
Seed eggNOG ortholog2880.D7FQU1
Preferred nameIFT88
Model size669
KEGG koko:K16474
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000226,GO:0000902,GO:0000904,GO:0001578,GO:0001654,GO:0001655,GO:0001669,GO:0001822,GO:0001885,GO:0001886,GO:0001889,GO:0001944,GO:0002064,GO:0002080,GO:0002081,GO:0002119,GO:0002164,GO:0003002,GO:0003006,GO:0003007,GO:0003008,GO:0003158,GO:0003205,GO:0003206,GO:0003279,GO:0003382,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0005813,GO:0005814,GO:0005815,GO:0005856,GO:0005929,GO:0005930,GO:0006810,GO:0006928,GO:0006950,GO:0006970,GO:0006996,GO:0006997,GO:0007010,GO:0007017,GO:0007018,GO:0007154,GO:0007165,GO:0007166,GO:0007219,GO:0007224,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007288,GO:0007289,GO:0007290,GO:0007368,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0007423,GO:0007507,GO:0007600,GO:0007605,GO:0007610,GO:0007626,GO:0008092,GO:0008104,GO:0008150,GO:0008283,GO:0008285,GO:0008544,GO:0008589,GO:0009628,GO:0009653,GO:0009790,GO:0009791,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009894,GO:0009952,GO:0009953,GO:0009966,GO:0009967,GO:0009987,GO:0010468,GO:0010506,GO:0010646,GO:0010647,GO:0010970,GO:0012505,GO:0012506,GO:0014706,GO:0015630,GO:0016020,GO:0016043,GO:0016241,GO:0019222,GO:0019894,GO:0019953,GO:0021510,GO:0021511,GO:0021513,GO:0021537,GO:0022008,GO:0022412,GO:0022414,GO:0022603,GO:0022607,GO:0022611,GO:0023051,GO:0023052,GO:0023056,GO:0030030,GO:0030031,GO:0030141,GO:0030154,GO:0030162,GO:0030182,GO:0030317,GO:0030323,GO:0030324,GO:0030326,GO:0030659,GO:0030667,GO:0030705,GO:0030855,GO:0030900,GO:0030990,GO:0030992,GO:0031016,GO:0031090,GO:0031122,GO:0031175,GO:0031323,GO:0031329,GO:0031344,GO:0031410,GO:0031503,GO:0031514,GO:0031982,GO:0031984,GO:0032101,GO:0032103,GO:0032391,GO:0032421,GO:0032501,GO:0032502,GO:0032504,GO:0032838,GO:0032989,GO:0032991,GO:0033036,GO:0033043,GO:0034405,GO:0035051,GO:0035082,GO:0035107,GO:0035108,GO:0035113,GO:0035295,GO:0035640,GO:0035641,GO:0035735,GO:0035869,GO:0036064,GO:0036334,GO:0040011,GO:0040012,GO:0040017,GO:0040024,GO:0042073,GO:0042127,GO:0042481,GO:0042487,GO:0042490,GO:0042592,GO:0042692,GO:0042733,GO:0042995,GO:0043005,GO:0043053,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043567,GO:0043568,GO:0043583,GO:0044085,GO:0044087,GO:0044088,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044431,GO:0044433,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044450,GO:0044463,GO:0044464,GO:0044703,GO:0044782,GO:0045446,GO:0045595,GO:0045598,GO:0046907,GO:0048232,GO:0048468,GO:0048513,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048598,GO:0048609,GO:0048645,GO:0048646,GO:0048666,GO:0048699,GO:0048731,GO:0048732,GO:0048736,GO:0048738,GO:0048839,GO:0048853,GO:0048854,GO:0048856,GO:0048869,GO:0048870,GO:0048872,GO:0050678,GO:0050680,GO:0050789,GO:0050793,GO:0050794,GO:0050795,GO:0050877,GO:0050896,GO:0050920,GO:0050921,GO:0050954,GO:0051128,GO:0051146,GO:0051171,GO:0051179,GO:0051234,GO:0051239,GO:0051246,GO:0051641,GO:0051649,GO:0051674,GO:0051704,GO:0051716,GO:0055007,GO:0055115,GO:0060021,GO:0060091,GO:0060113,GO:0060119,GO:0060122,GO:0060173,GO:0060255,GO:0060259,GO:0060271,GO:0060322,GO:0060411,GO:0060426,GO:0060429,GO:0060491,GO:0060537,GO:0060541,GO:0060914,GO:0061008,GO:0061061,GO:0061351,GO:0065007,GO:0065008,GO:0070613,GO:0070925,GO:0071840,GO:0072001,GO:0072358,GO:0072359,GO:0080090,GO:0090102,GO:0097014,GO:0097223,GO:0097435,GO:0097458,GO:0097541,GO:0097542,GO:0097546,GO:0097708,GO:0097722,GO:0097730,GO:0097731,GO:0097732,GO:0097733,GO:0098588,GO:0098589,GO:0098791,GO:0098805,GO:0098862,GO:0099111,GO:0099503,GO:0099568,GO:0120025,GO:0120031,GO:0120032,GO:0120035,GO:0120036,GO:0120038,GO:1902017,GO:1902115,GO:1903317,GO:1903929,GO:1905515,GO:2000026,GO:2000027,GO:2000785
Exons5
EggNOG free text desc.non-motile cilium assembly
EggNOG OGsCOG0457@1,KOG2003@2759
Cds size666
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462702.9274828-CDS-Ecto-sp13_S_contig13125:1907..20001681462702.9274828-CDS-Ecto-sp13_S_contig13125:1907..2000Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13125 1908..2000 -
1681462702.9417062-CDS-Ecto-sp13_S_contig13125:2139..22711681462702.9417062-CDS-Ecto-sp13_S_contig13125:2139..2271Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13125 2140..2271 -
1681462702.9529052-CDS-Ecto-sp13_S_contig13125:2614..26951681462702.9529052-CDS-Ecto-sp13_S_contig13125:2614..2695Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13125 2615..2695 -
1681462702.9630394-CDS-Ecto-sp13_S_contig13125:2910..30991681462702.9630394-CDS-Ecto-sp13_S_contig13125:2910..3099Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13125 2911..3099 -
1681462702.9733558-CDS-Ecto-sp13_S_contig13125:3699..38701681462702.9733558-CDS-Ecto-sp13_S_contig13125:3699..3870Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13125 3700..3870 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13125.2545.1prot_Ecto-sp13_S_contig13125.2545.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13125 1908..3870 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13125.2545.1

>prot_Ecto-sp13_S_contig13125.2545.1 ID=prot_Ecto-sp13_S_contig13125.2545.1|Name=mRNA_Ecto-sp13_S_contig13125.2545.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=222bp
SIPSQLPGSVLHNTYPGTSALGTAGAMRSSGPSTAMRAPGTSTGRPPPSQ
MGRMMTGAVPGTALRASGEARPMTSVSGAGYQSKKQGTFDPLNQGHGPAP
ALAEKSDNGPEYLAKEMERQVHAMMEESATACVSGDFSQALEKAKEADKK
EKALCKQRERHGLVDQINLDLTYAVCFNLANCYHQNGMKKEALREYSAIV
KNKQYPQAGRLRANMGNIYYEQ
back to top

mRNA from alignment at Ecto-sp13_S_contig13125:1906..3870-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13125.2545.1 ID=mRNA_Ecto-sp13_S_contig13125.2545.1|Name=mRNA_Ecto-sp13_S_contig13125.2545.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1965bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13125:1906..3870- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCATTCCAAGTCAGCTGCCGGGATCTGTGTTGCACAACACCTACCCGGG
GACTAGTGCGTTGGGCACGGCAGGGGCAATGCGAAGTTCTGGGCCGTCGA
CTGCAATGCGAGCCCCAGGAACTAGTACTGGCAGGCCTCCGCCATCACAA
ATGGGCAGGATGATGACAGGGGTGAGTTCAGCTGGTGTAAAATATGAACG
CTGACACGCTACATCACTCATACATGTGGAAATAATTGGATGCGGAACGA
GTGGTCTGAGCGATGTGTGTAGACGAATAGTGCCCGAAGTGGGTCACTGG
TTGTCTTTGGTGCTCGATGTCGTATGGTAAGCACCATGAATCTGGAGGCT
GGGCATTCTTACCAGGCTCCCCCGCATGATGCGGGGAGCAACAGAGCCAA
TACGATTTTAAGTGTGAGTTCTTATTTTTGGTCATTTTGAAACCTCTTCT
GACTCAAGTCCTTGAGCGGCACTTTCTGTACATCGGATTTTGCCGTGGAG
AGGGGCCCCTGATGTTATCCCCCGATGACACCTGTGAGAGATTTGGAGAC
GGTATGACGTCGGTTGATTTTGAGGAGGTTCAAGGGGGATAGGGGGGTAT
GTACATTGTAGCGTACTCTGATCACTTAATTGTGTCATGACATGTTCGGG
CAAGGTTGAAGCTATGCCCGTTTGGTGGTAGCACCACCGTTGCAGGTTGT
TCGTGGCATGGCACCGGATGTCAACTCCACCTCACGTAAAAAATCTTCTG
GTATGACGCCCGTTGCACTAGGCCGTGCCGGGAACAGCCCTGAGGGCGAG
TGGGGAAGCGCGACCGATGACTTCGGTGTCCGGCGCCGGCTACCAGTCGA
AGAAACAAGGAACATTCGACCCGTTGAACCAAGGACATGGCCCCGCCCCT
GCGCTGGCAGAGAAGTCTGACAACGGTCCAGAATATCTCGCAAAGGAGAT
GGAACGGCAGGTACCTCCAACCTTGTCCTCGTGTCTTGTGTAGATTGAAC
TTGCACGAAAGGGTCCTCCGTTAGCTAATCGCGTTGCAATCATGTTGGGG
TACTTGTGAAAGGTTCAGGTGCTCCAAACATGTTACGCCGGAATTTTCCA
ATGTTGTTGCTTCCACCTAAACATTGTGCTGCTTGACTTCCGCGTGCTCT
CACTACCCCCCACATTGCCGGATAGGTACACGCGATGATGGAGGAAAGTG
CCACCGCGTGTGTTTCGGGAGACTTTTCCCAAGCCCTAGAGAAGGCCAAA
GAAGCTGTAAGTCAGGAACAGCTTTCGGTTTAGTTGTTTCACTTCTTTCC
ATGGTATTCCAGGTTTAGGGACGCCGGGGAAGGTGGTGAACTTTCACTGC
GGAAGAACCGGCAACAATGAGTACGTGGCCTCTCGAAGCCAGGGAAGTGC
CCCCTTTCTTCGAACAGACTGTTCTCTGCGTAGCTAGCAGTAAATAGATG
CTAATATTCGGGGGCATTTTCTTCCGATAACCCATCGTATTGTACACTAT
ACATGCATGACTACAAGCACGTTCAGACCAGGTCGGCGCGGCTCGTTCGT
CTGGCATGTGATCGGTGTGCCACTCCTTGCACTTGCTCTGCTAATTCAGG
ACAAGAAAGAGAAGGCCCTGTGCAAGCAGAGGGAAAGGCACGGCCTGGTC
GACCAAATCAACCTCGACCTCACCTATGCGGTTTGCTTTAACCTGGCCAA
CTGCTACCACCAGAATGGCATGAAGAAAGAGGTGATGCCTATCATGTACC
AGACAACAGCGTTTCTCCCTTCTAGTCCGATGTTGTGTCGATCTGTGGTT
CCTCCTGAGGTTGTTACTCTACGAAGCTCCTATGGGCTGAATCACAACGT
GCGTGCGTTACTACCCGCAGGCCCTACGAGAGTACAGCGCTATCGTGAAG
AACAAACAGTACCCACAAGCTGGACGACTTCGGGCGAACATGGGTAATAT
CTACTACGAGCAGGT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13125:1906..3870-

>mRNA_Ecto-sp13_S_contig13125.2545.1 ID=mRNA_Ecto-sp13_S_contig13125.2545.1|Name=mRNA_Ecto-sp13_S_contig13125.2545.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=666bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13125:1906..3870- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCATTCCAAGTCAGCTGCCGGGATCTGTGTTGCACAACACCTACCCGGG
GACTAGTGCGTTGGGCACGGCAGGGGCAATGCGAAGTTCTGGGCCGTCGA
CTGCAATGCGAGCCCCAGGAACTAGTACTGGCAGGCCTCCGCCATCACAA
ATGGGCAGGATGATGACAGGGGCCGTGCCGGGAACAGCCCTGAGGGCGAG
TGGGGAAGCGCGACCGATGACTTCGGTGTCCGGCGCCGGCTACCAGTCGA
AGAAACAAGGAACATTCGACCCGTTGAACCAAGGACATGGCCCCGCCCCT
GCGCTGGCAGAGAAGTCTGACAACGGTCCAGAATATCTCGCAAAGGAGAT
GGAACGGCAGGTACACGCGATGATGGAGGAAAGTGCCACCGCGTGTGTTT
CGGGAGACTTTTCCCAAGCCCTAGAGAAGGCCAAAGAAGCTGACAAGAAA
GAGAAGGCCCTGTGCAAGCAGAGGGAAAGGCACGGCCTGGTCGACCAAAT
CAACCTCGACCTCACCTATGCGGTTTGCTTTAACCTGGCCAACTGCTACC
ACCAGAATGGCATGAAGAAAGAGGCCCTACGAGAGTACAGCGCTATCGTG
AAGAACAAACAGTACCCACAAGCTGGACGACTTCGGGCGAACATGGGTAA
TATCTACTACGAGCAG
back to top