mRNA_Ecto-sp13_S_contig13113.2540.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13113.2540.1
Unique NamemRNA_Ecto-sp13_S_contig13113.2540.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13113.2540.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13113contigEcto-sp13_S_contig13113:1999..4552 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size705
Hectar predicted targeting categoryother localisation
Exons4
Cds size519
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13113.2540.1prot_Ecto-sp13_S_contig13113.2540.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13113 2117..4484 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462702.584193-UTR-Ecto-sp13_S_contig13113:1998..21161681462702.584193-UTR-Ecto-sp13_S_contig13113:1998..2116Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13113 1999..2116 -
1681462702.628747-UTR-Ecto-sp13_S_contig13113:4484..45521681462702.628747-UTR-Ecto-sp13_S_contig13113:4484..4552Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13113 4485..4552 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462702.593237-CDS-Ecto-sp13_S_contig13113:2116..22981681462702.593237-CDS-Ecto-sp13_S_contig13113:2116..2298Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13113 2117..2298 -
1681462702.601226-CDS-Ecto-sp13_S_contig13113:3123..32761681462702.601226-CDS-Ecto-sp13_S_contig13113:3123..3276Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13113 3124..3276 -
1681462702.6097026-CDS-Ecto-sp13_S_contig13113:3785..38481681462702.6097026-CDS-Ecto-sp13_S_contig13113:3785..3848Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13113 3786..3848 -
1681462702.6190972-CDS-Ecto-sp13_S_contig13113:4363..44841681462702.6190972-CDS-Ecto-sp13_S_contig13113:4363..4484Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13113 4364..4484 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13113.2540.1

>prot_Ecto-sp13_S_contig13113.2540.1 ID=prot_Ecto-sp13_S_contig13113.2540.1|Name=mRNA_Ecto-sp13_S_contig13113.2540.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=173bp
MGRLGRYGVHNSYSGDVLDRRQAQAHVGRSSRHWWNMLGFDVRVHHAGGR
SHPGDQDCPPEGTTGLACESKGTSPTTGGHPRGGRLPLQRSCGGTRADGR
RPEHPYHSPHGFRVAWNSGCSLGGSLHQVSWGEGSPISTTISGTDIRRGL
PSCFISRVDDQFVSVSEGDQDI*
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mRNA from alignment at Ecto-sp13_S_contig13113:1999..4552-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13113.2540.1 ID=mRNA_Ecto-sp13_S_contig13113.2540.1|Name=mRNA_Ecto-sp13_S_contig13113.2540.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2554bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13113:1999..4552- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCTGGTCGTGGCGGGTAGTGCGATGGCTAAGTTGAAGACGTGTGCACT
GGAACGGAATCTGCTCGCATGGGGCGGCTGGGCCGGTATGGGGTCCACAA
TTCTTACAGCGGGGATGTCCTTGATCGTCGACAAGCGCAAGCTCATGTCG
GCCGTTCATCTCGCCACTGGTGGAATATGCTTGGGTTCGGTAAGATGCTT
CAAGCAGATGGTGGGAGCGTGCTGATATCGTATCTCGCTCCTGCATGTTC
GGATATTTGCTAGAAGACGTAAGTATTGATTCAAAACTGCTTTCTCTTCC
ACAAACGAATTAACACAGGGAAATTGCGCGACAACTTTCAGGAGCCACGC
AACATCTTAGGCATCGCACCATCGTTCTGACGGGGTCTCCAGAACCCGAC
ATACGTTTGAGTAGAACGACCCCAAACCATCCCAATAGTTGTTTCCGAAA
ACTTAAGGGTAGGGCGATCACGCGTTGAGTTCATCGTTTCTGCCTGCTCT
CGTCCTATCGGCGACCACAGCTCATTTTTTATGGAGGATGGCCTATTTAC
CACCCAATCTGCTTGGTGCAACGTCATCTCGTCATTTTGATTATTCTGTT
CGCGCTAGATGGCGCTATTCGTGGACAGAGACGTTCAAAGCGACTTCACC
TATTATGTGCCTGAAACGTAGCACTCGAAGCCTCCCGACTTGTATCTTTT
GCAGATGTTCGGGTTCATCACGCTGGCGGGCGTTCTCACCCGGGAGATCA
AGATTGCCCACCTGAAGGTGATGTTCACAGTCTGATTTGGTGTCGTGCGG
CATGCGATACATGGTGAGAGCTAACATCGATTATCCTTTCCTCCTTCATT
TGAAAGAAGGATCAGACTGCCCCAAGGCGAGTACTCTGTGGCCATACCTT
TCGTTCAACAGTATCCCGTTTACGTTGTAGTCCAGGCACCTTTAATCCCT
ATTTTACCCCATTGCAGTATCGGGTTGGGATATGTTAGCTCGTGAGACGG
CAGCAATCAGGAGGAGGATAGGTACAACAGGCCTCCCAATTGAAGACAGA
AGGCATTTAGCCATGGATTGTTTTGTACGTCCTGCGTCGGGAATTAGGTG
GTGGCACAAGGCGGCATGGTCTAAGGGACGGATTGCATGATTGTCGGCGG
CATGTCCAACATCGTATACAAAGCACTGGGTTGTCCAATGTTTCCTGATG
AACCCGTCAACTGCAGCGAGAATTTTTTTTGTCGGTAGTATCATTTCCGC
TGGCTGTCTCTCCGGTATCTCAACAGGCACCACAGGCCTGGCATGCGAAA
GCAAGGGTACGAGTCCGACGACAGGCGGGCATCCTCGTGGCGGCAGGCTG
CCTCTGCAGCGCAGCTGTGGTGGTACTAGAGCTGACGGACGCAGGCCGGA
GCACCCCTATCATTCCCCACACGGTTTTCGTAAGTTGGCAACGTCAAGAT
CAACGCTCACGTTTGCGTTCACCATGATTATCGCGAGCGATGCGCCCTCT
GGACAGCGCCATTCGGACTGCACTTTCGACAAGTTTGATCGCGAAGACCA
CCAGAAAATACTTTCAGCAGGTATTCAAACACTCGTCGGAAAACATCCTT
TCATCACCAAACAAGACAGGCGCTTCCCACCGACTAACGTCTGGGGAAAT
GTATTTGCGAGGCAAGGTCACTGCCAAGTTTGCTCATGTTCCTGCGACAC
ATCCCGCTAAAGTCAGCTGACGAATCCTCCCGCGTTGAATGAACTATGAG
GCCATCAGCATCATCAGTAAAAACGCCGTCCTCTACCAACAACAACAACT
GAGTCCATACAACTTCGCATGGTTCCCAAGAACGTTGCCGAACACCACCC
GGCAAGGTCGTAGGATGATTCGATGTGGGGCGTTCCTACTTCGACGTTAT
TCAATAACGATTCCTACCTCTTCGGAACTTTCGAACATTTTGAACCCTGC
CAGCCTTTGTCGTTACGGTACCGTCCATGACGCTGCGCGGTATCATTTTC
CTTTCTAGGGGCAAATATTAGCTATTTTCGAGTAAGAATGTTGCCGCGGG
TGGCAGTCAGGGATTCATCGAAACACACACGTTTTTGACCCATTGATGCG
TAATGGTCCTGTTTCATGGTGAAGGCGATGTCAGCGAAGAAATCAAAACA
AACTTCCACCATGGTTGGACCGATCCATTGCTGTATGGGTTTGCAAGATT
AACCCGCGTTTCCCCTCTGAAGTTTGCACGAACAACGACGCACACGTTAT
ACAGGTGTTGCTTGGAATAGTGGGTGTAGTCTCGGTGGTTCACTTCACCA
AGTCAGCTGGGGCGAGGGGAGTCCCATCTCTACGACGATTTCTGGGACAG
ACATCCGCCGTGGGCTACCCAGTTGTTTCATCTCGAGGGTCGATGATCAA
TTCGTTTCTGTCTCCGAGGGTGACCAAGACATTTGAAGCGAAATGTGAAG
AAGAAAGGCAGTGGGTGAAAAAGGAGGATAGCCCTTTTGCCGTCGGATCA
AAAAGGGGAGCTCTGACCACGAAGGTGATCCCGATGGTGATAGAGCTACA
AGAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13113:1999..4552-

>mRNA_Ecto-sp13_S_contig13113.2540.1 ID=mRNA_Ecto-sp13_S_contig13113.2540.1|Name=mRNA_Ecto-sp13_S_contig13113.2540.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=519bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13113:1999..4552- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGCGGCTGGGCCGGTATGGGGTCCACAATTCTTACAGCGGGGATGT
CCTTGATCGTCGACAAGCGCAAGCTCATGTCGGCCGTTCATCTCGCCACT
GGTGGAATATGCTTGGGTTCGATGTTCGGGTTCATCACGCTGGCGGGCGT
TCTCACCCGGGAGATCAAGATTGCCCACCTGAAGGCACCACAGGCCTGGC
ATGCGAAAGCAAGGGTACGAGTCCGACGACAGGCGGGCATCCTCGTGGCG
GCAGGCTGCCTCTGCAGCGCAGCTGTGGTGGTACTAGAGCTGACGGACGC
AGGCCGGAGCACCCCTATCATTCCCCACACGGTTTTCGTGTTGCTTGGAA
TAGTGGGTGTAGTCTCGGTGGTTCACTTCACCAAGTCAGCTGGGGCGAGG
GGAGTCCCATCTCTACGACGATTTCTGGGACAGACATCCGCCGTGGGCTA
CCCAGTTGTTTCATCTCGAGGGTCGATGATCAATTCGTTTCTGTCTCCGA
GGGTGACCAAGACATTTGA
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