mRNA_Ecto-sp13_S_contig13111.2538.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13111.2538.1
Unique NamemRNA_Ecto-sp13_S_contig13111.2538.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig13111.2538.1 vs. uniprot
Match: A0A6H5KKY7_9PHAE (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKY7_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 2.150e-45
Identity = 103/237 (43.46%), Postives = 105/237 (44.30%), Query Frame = 1
Query:    4 YFMGISVAYHLCVAPDHDTLESSIVNSIEAKREGERQRA-----------------------------------------------------------------------------------------------------------------------------------EGYGDDWGEVQVRHSGNFSNGNPFMTQVMGGINYQIEHHLFPSMSHMLYAEIAPIVKDACKEFNIPY 321
            YFMGISVAYHLCVAPDHDTLESSIVNSIEAKREGERQRA                                                                                                                                   +GYGDDWGEVQVRHSGNFSNGNPF+TQ MGGINYQIEHHLFPSMSHMLYAEIAPIVKDACKEFNIPY
Sbjct:  431 YFMGISVAYHLCVAPDHDTLESSIVNSIEAKREGERQRAVEAAXXXXXXXXXXXXXXXXXXXXXVQNQEKTVAATGEGGDFRRRRCIGKGGQRRETIGGATFETTTVAVAVPEPPATEAASVACLCESCNIPGGDGGVVGGAGREARGLGPAGGARGGGSSSATGDTEEEDGYGDDWGEVQVRHSGNFSNGNPFVTQAMGGINYQIEHHLFPSMSHMLYAEIAPIVKDACKEFNIPY 667          
BLAST of mRNA_Ecto-sp13_S_contig13111.2538.1 vs. uniprot
Match: A0A0G4FKE0_9ALVE (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FKE0_9ALVE)

HSP 1 Score: 113 bits (283), Expect = 3.560e-27
Identity = 50/108 (46.30%), Postives = 75/108 (69.44%), Query Frame = 1
Query:    1 SYFMGISVAYHLCVAPDHDTLESSIVNSIEAKREGERQRAEGYGDDWGEVQVRHSGNFSNGNPFMTQVMGGINYQIEHHLFPSMSHMLYAEIAPIVKDACKEFNIPYK 324
            +Y+  +++ Y +C+APDHDT ES  +N  +A+  G+++       DWGE+QVR S NF+   P +  + GGINYQIEHHLFP +SH+ Y ++APIV+  C+EF +PY+
Sbjct:  407 AYWGSLNILYWMCIAPDHDTWESLSLNKKKAEEGGDKEEKM----DWGEMQVRESSNFAVDYPVVCTLFGGINYQIEHHLFPGVSHVHYRDLAPIVRSTCQEFGVPYQ 510          
BLAST of mRNA_Ecto-sp13_S_contig13111.2538.1 vs. uniprot
Match: A0A5K0U7T4_9VIRU (Cytochrome b5-like heme/steroid binding domain n=1 Tax=Yasminevirus sp. GU-2018 TaxID=2420051 RepID=A0A5K0U7T4_9VIRU)

HSP 1 Score: 102 bits (255), Expect = 1.780e-23
Identity = 51/107 (47.66%), Postives = 69/107 (64.49%), Query Frame = 1
Query:    1 SYFMGISVAYHLCVAPDHDTLESSIVNSIEAKREGERQRAEGYGDDWGEVQVRHSGNFSNGNPFMTQVMGGINYQIEHHLFPSMSHMLYAEIAPIVKDACKEFNIPY 321
            +Y + +++ Y + + PDHDT + +  N I++    +     G   DWGE+QVR+SGNF+  N   T  MGGINYQIEHHLFPS+ H+ Y  I+ IVK  C EFNIPY
Sbjct:  319 AYIVPLNILYFVGIFPDHDT-QKTADNKIKSTDSTDN----GLDIDWGEMQVRNSGNFATSNKVFTYFMGGINYQIEHHLFPSVCHVHYPAISSIVKKTCAEFNIPY 420          
BLAST of mRNA_Ecto-sp13_S_contig13111.2538.1 vs. uniprot
Match: A0A5E8CJX7_9ZZZZ (Fatty acid desaturase n=1 Tax=seawater metagenome TaxID=1561972 RepID=A0A5E8CJX7_9ZZZZ)

HSP 1 Score: 101 bits (252), Expect = 3.770e-23
Identity = 53/109 (48.62%), Postives = 65/109 (59.63%), Query Frame = 1
Query:    1 SYFMGISVAYHLCVAPDHDTLESSIVNSIEAKREGERQRAEGYGDDWGEVQVRHSGNFSNGN--PFMTQVMGGINYQIEHHLFPSMSHMLYAEIAPIVKDACKEFNIPY 321
            SY +  +++Y  C+ PDHDT +S I    +AK            +DWGE QV HS NF       +   + GGINYQIEHHLFPSM H+ Y EIAPIVK  C+EFNI Y
Sbjct:  303 SYLIAANISYGCCILPDHDTYQSMI---NQAKT-----------NDWGEAQVVHSANFETKRFCDYFCYIFGGINYQIEHHLFPSMCHVHYPEIAPIVKKTCQEFNIEY 397          
BLAST of mRNA_Ecto-sp13_S_contig13111.2538.1 vs. uniprot
Match: A0A0V0QTF1_PSEPJ (Cytochrome b5-like heme/steroid binding domain n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0QTF1_PSEPJ)

HSP 1 Score: 100 bits (249), Expect = 1.070e-22
Identity = 51/108 (47.22%), Postives = 67/108 (62.04%), Query Frame = 1
Query:    4 YFMGISVAYHLCVAPDHDTLESSIVNSIEAKREGERQRAEGYGDDWGEVQVRHSGNFSNGNPF--MTQVMGGINYQIEHHLFPSMSHMLYAEIAPIVKDACKEFNIPY 321
            YF+G ++AY L + PDHDT ++              Q  +    DWGE QVR+SGNF N   F     + GGINYQIEHHLFPSM ++   +I+PIV++ CKEFN+PY
Sbjct:  320 YFIGYNMAYSLAIVPDHDTNQT-------------HQNFDPSRKDWGETQVRNSGNFGNKVFFDLYNHIFGGINYQIEHHLFPSMCNVHLNQISPIVQETCKEFNVPY 414          
BLAST of mRNA_Ecto-sp13_S_contig13111.2538.1 vs. uniprot
Match: A0A6C0KGR0_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0KGR0_9ZZZZ)

HSP 1 Score: 98.6 bits (244), Expect = 5.260e-22
Identity = 48/112 (42.86%), Postives = 68/112 (60.71%), Query Frame = 1
Query:    4 YFMGISVAYHLCVAPDHDTLESSIVNSIEAKREGERQRAEGYGD------DWGEVQVRHSGNFSNGNPFMTQVMGGINYQIEHHLFPSMSHMLYAEIAPIVKDACKEFNIPY 321
            + +G+++ Y +  APDHD       N ++ +   + Q             DWGE+QV+HSGNF +  P  T+  GGINYQIEHHLFP++++    EI+ IVK+ CKEFNIPY
Sbjct:  295 HLVGMNIGYFIGSAPDHDMYP----NHLQIEEHNKEQSXXXXXXXQYIIKDWGEIQVKHSGNFMSNYPLFTRFYGGINYQIEHHLFPTLNNHKLVEISSIVKECCKEFNIPY 402          
BLAST of mRNA_Ecto-sp13_S_contig13111.2538.1 vs. uniprot
Match: A0A6C0EHR9_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0EHR9_9ZZZZ)

HSP 1 Score: 97.4 bits (241), Expect = 1.200e-21
Identity = 52/110 (47.27%), Postives = 68/110 (61.82%), Query Frame = 1
Query:    4 YFMGISVAYHLCVAPDHDTLESSIVNSIEAKREGERQRAEGYGDDWGEVQVRHSGNFSNGNPF----MTQVMGGINYQIEHHLFPSMSHMLYAEIAPIVKDACKEFNIPY 321
            + +G ++ Y +  +PDHD  ++    S          +  G   DWGE+QVRHSGNF N +       T++MGGINYQIEHHLFP++S    AEIAPIVK+ C EFNIPY
Sbjct:  291 HIVGANIGYFIGSSPDHDMYDTHKQVS----------KNNGILMDWGELQVRHSGNFFNTDTIPHILFTKLMGGINYQIEHHLFPTLSSHRLAEIAPIVKEVCIEFNIPY 390          
BLAST of mRNA_Ecto-sp13_S_contig13111.2538.1 vs. uniprot
Match: A0A7S4IBV6_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4IBV6_9EUKA)

HSP 1 Score: 93.2 bits (230), Expect = 1.750e-21
Identity = 45/107 (42.06%), Postives = 63/107 (58.88%), Query Frame = 1
Query:    1 SYFMGISVAYHLCVAPDHDTLESSIVNSIEAKREGERQRAEGYGDDWGEVQVRHSGNFSNGNPFMTQVMGGINYQIEHHLFPSMSHMLYAEIAPIVKDACKEFNIPY 321
            +YF+G ++ Y   +AP+HD  E ++   +         R      DWGE QVR S NFS   P +  ++GGINYQIEHHLFP +SH  Y E+  IV+D C++  +PY
Sbjct:   61 AYFLGFNLLYFCSIAPNHDVAEVAVAAQM---------RGAVGTVDWGEAQVRASANFSTNVPLIGLLLGGINYQIEHHLFPGVSHAHYPELQQIVRDECEKRGLPY 158          
BLAST of mRNA_Ecto-sp13_S_contig13111.2538.1 vs. uniprot
Match: D7G102_ECTSI (Fatty acid desaturase, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G102_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 4.300e-20
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 1
Query:  205 MGGINYQIEHHLFPSMSHMLYAEIAPIVKDACKEFNIPY 321
            MGGINYQIEHHLFPSMSHMLYAEIAPIVKDAC+EFNIPY
Sbjct:    1 MGGINYQIEHHLFPSMSHMLYAEIAPIVKDACEEFNIPY 39          
BLAST of mRNA_Ecto-sp13_S_contig13111.2538.1 vs. uniprot
Match: A0A7S1KUI1_9EUKA (Hypothetical protein n=1 Tax=Percolomonas cosmopolitus TaxID=63605 RepID=A0A7S1KUI1_9EUKA)

HSP 1 Score: 91.7 bits (226), Expect = 2.110e-19
Identity = 45/106 (42.45%), Postives = 65/106 (61.32%), Query Frame = 1
Query:    4 YFMGISVAYHLCVAPDHDTLESSIVNSIEAKREGERQRAEGYGDDWGEVQVRHSGNFSNGNPFMTQVMGGINYQIEHHLFPSMSHMLYAEIAPIVKDACKEFNIPY 321
            ++ G+ + Y++ VAP HDT      N +  K++           DWG+ Q+ HS NFS+ N  +T ++GG+NYQIEHHLFPS+S +    IA IVK+ C E N+PY
Sbjct:  360 FWAGVGITYYIIVAPGHDT------NVVSFKQK----------QDWGDQQIMHSSNFSHSNKVLTFLVGGMNYQIEHHLFPSVSWIHLPRIAKIVKEVCAERNMPY 449          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13111.2538.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKY7_9PHAE2.150e-4543.46Cytochrome b5 heme-binding domain-containing prote... [more]
A0A0G4FKE0_9ALVE3.560e-2746.30Cytochrome b5 heme-binding domain-containing prote... [more]
A0A5K0U7T4_9VIRU1.780e-2347.66Cytochrome b5-like heme/steroid binding domain n=1... [more]
A0A5E8CJX7_9ZZZZ3.770e-2348.62Fatty acid desaturase n=1 Tax=seawater metagenome ... [more]
A0A0V0QTF1_PSEPJ1.070e-2247.22Cytochrome b5-like heme/steroid binding domain n=1... [more]
A0A6C0KGR0_9ZZZZ5.260e-2242.86Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A6C0EHR9_9ZZZZ1.200e-2147.27Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A7S4IBV6_9EUKA1.750e-2142.06Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
D7G102_ECTSI4.300e-2097.44Fatty acid desaturase, partial n=1 Tax=Ectocarpus ... [more]
A0A7S1KUI1_9EUKA2.110e-1942.45Hypothetical protein n=1 Tax=Percolomonas cosmopol... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13111contigEcto-sp13_S_contig13111:3531..4707 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop1
Start1
Seed ortholog score87.4
Seed ortholog evalue4.3e-15
Seed eggNOG ortholog1313421.JHBV01000008_gene4464
Preferred namedesD
Model size327
KEGG rclassRC00917
KEGG koko:K00508
KEGG ReactionR07063
KEGG Pathwayko00591,ko01100,map00591,map01100
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.fatty acid desaturase
EggNOG OGs1IQ00@117747,4NERD@976,COG3239@1,COG3239@2
Ec32 ortholog descriptionFatty acid desaturase, partial
Ec32 orthologEc-22_001490.1
EC1.14.19.3
Cds size318
COG Functional cat.I
BiGG ReactioniJN678.desD_des6_
Best tax levelSphingobacteriia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01004
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462702.386811-CDS-Ecto-sp13_S_contig13111:3530..37041681462702.386811-CDS-Ecto-sp13_S_contig13111:3530..3704Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13111 3531..3704 -
1681462702.4001076-CDS-Ecto-sp13_S_contig13111:4173..42061681462702.4001076-CDS-Ecto-sp13_S_contig13111:4173..4206Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13111 4174..4206 -
1681462702.4214163-CDS-Ecto-sp13_S_contig13111:4587..46981681462702.4214163-CDS-Ecto-sp13_S_contig13111:4587..4698Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13111 4588..4698 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462702.435431-UTR-Ecto-sp13_S_contig13111:4698..47071681462702.435431-UTR-Ecto-sp13_S_contig13111:4698..4707Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13111 4699..4707 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13111.2538.1prot_Ecto-sp13_S_contig13111.2538.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13111 3531..4698 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13111.2538.1

>prot_Ecto-sp13_S_contig13111.2538.1 ID=prot_Ecto-sp13_S_contig13111.2538.1|Name=mRNA_Ecto-sp13_S_contig13111.2538.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=106bp
MGISVAYHLCVAPDHDTLESSIVNSIEAKREGERQRAEGYGDDWGEVQVR
HSGNFSNGNPFMTQVMGGINYQIEHHLFPSMSHMLYAEIAPIVKDACKEF
NIPYK*
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mRNA from alignment at Ecto-sp13_S_contig13111:3531..4707-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13111.2538.1 ID=mRNA_Ecto-sp13_S_contig13111.2538.1|Name=mRNA_Ecto-sp13_S_contig13111.2538.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1177bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13111:3531..4707- (Ectocarpus species13 EcNAP12_S_4_19m)
AGTTATTTCATGGGCATAAGTGTGGCCTACCACCTGTGTGTCGCACCGGA CCACGACACGCTCGAGTCGTCGATCGTCAACAGCATTGAGGCCAAGAGGG AAGGGGAGCGACAGAGAGCAGTGGCAGCGGCAACGATGACAAGCAGCGCC AATGCTAGCAGCAGCAGCAGCAGTGGCGACTGCGTCAAGAATCAAGAAAA AACGGTGGAGGCCACGGGAGAAGGCGGCGACTTCGAGGGGCGACGCCGTA TCGGGAAAGGGGGGCAAAGAGAAAAGGCGACAGGGGGCGCGACCTTTGAG GCCGCGACGGTGCCGGTGGCGGTGCCAGAACCACCAGCAACTGAGGCGGC ACCCGTACCCGGCGTGTGCGAGAGTTGCAACAGTGCCGGCGGAGTTGGGG GTGTCGTGGGTGGGGCGGGACGGGAGGCGAGAGGAATGGGCTCCGCAGGC GGAGCGGGAGGGGGGAGGTCCTCCTCTGTAAAGGGGGATACTGAGGAGGA GGAAGGGTACGGCGATGATTGGGGAGAGGTGCAGGTGTGTACTTTATTTT CGTTTGTTTGCATCGGCGGCGCTAACCGGCTGATCGATGCAAGGTTACGA TATCGTTAGGGAGTACCAAATCGACCTCTCCGAAAGGTGTGTGTTATGCT GTTCTTGAGCATCAAAGCAGTGACCAAAGAATGGTCGTGATAGAAGGCGC GCCACGCCCTGATTGGCGTTCAGGAACAAAGGCGTACGCGTCGCGAATCT CTGCAAACAAGGAGCGTGAGGTCCATGTCTGATCGTCCCCCCAAGAATAC GTATCCACCCAGCCGTTCACACTCACACACCCGTCCTCCTATGAATTTTC GTGACACACACCCTCGGGCGTTTGGTATACGTTGCGGCTGCTTCCGCGGT CAAATGCCTTGAAGGCCGAGGCAAGTGTCAACTGACAAGGACCCCCTCAT ATTAACTGACCACGACCTCACCCTACGTGCACGGCACCCCCTCCACGCGC CAGGTGCGACACAGCGGGAATTTCAGCAACGGTAACCCCTTCATGACGCA GGTGATGGGCGGGATAAACTACCAAATCGAGCACCACCTTTTCCCCTCCA TGTCTCACATGCTGTACGCAGAGATCGCCCCGATCGTCAAGGACGCCTGC AAGGAATTCAACATCCCGTACAAGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13111:3531..4707-

>mRNA_Ecto-sp13_S_contig13111.2538.1 ID=mRNA_Ecto-sp13_S_contig13111.2538.1|Name=mRNA_Ecto-sp13_S_contig13111.2538.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=318bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13111:3531..4707- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCATAAGTGTGGCCTACCACCTGTGTGTCGCACCGGACCACGACAC
GCTCGAGTCGTCGATCGTCAACAGCATTGAGGCCAAGAGGGAAGGGGAGC
GACAGAGAGCAGAAGGGTACGGCGATGATTGGGGAGAGGTGCAGGTGCGA
CACAGCGGGAATTTCAGCAACGGTAACCCCTTCATGACGCAGGTGATGGG
CGGGATAAACTACCAAATCGAGCACCACCTTTTCCCCTCCATGTCTCACA
TGCTGTACGCAGAGATCGCCCCGATCGTCAAGGACGCCTGCAAGGAATTC
AACATCCCGTACAAGTGA
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