mRNA_Ecto-sp13_S_contig1311.2537.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1311.2537.1
Unique NamemRNA_Ecto-sp13_S_contig1311.2537.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1311.2537.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1311contigEcto-sp13_S_contig1311:14063..14975 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size651
Hectar predicted targeting categoryother localisation
Exons2
Cds size351
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462702.0742197-UTR-Ecto-sp13_S_contig1311:14062..140921681462702.0742197-UTR-Ecto-sp13_S_contig1311:14062..14092Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1311 14063..14092 +
1681462702.0843048-UTR-Ecto-sp13_S_contig1311:14354..144781681462702.0843048-UTR-Ecto-sp13_S_contig1311:14354..14478Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1311 14355..14478 +
1681462702.1031802-UTR-Ecto-sp13_S_contig1311:14829..149751681462702.1031802-UTR-Ecto-sp13_S_contig1311:14829..14975Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1311 14830..14975 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462702.0938962-CDS-Ecto-sp13_S_contig1311:14478..148291681462702.0938962-CDS-Ecto-sp13_S_contig1311:14478..14829Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1311 14479..14829 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1311.2537.1prot_Ecto-sp13_S_contig1311.2537.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1311 14479..14829 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1311.2537.1

>prot_Ecto-sp13_S_contig1311.2537.1 ID=prot_Ecto-sp13_S_contig1311.2537.1|Name=mRNA_Ecto-sp13_S_contig1311.2537.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=117bp
MNSACCGLPSREHKAVSMGRTSAAVLPCCVMCCLESQKPANTTRSLRSWH
LPATLADVGNGGKLPCLLFRLEKTTYEFLIPLLPKVPGCVYKMRQSAVLF
VLRVVYCNSSEPPATA*
back to top

mRNA from alignment at Ecto-sp13_S_contig1311:14063..14975+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1311.2537.1 ID=mRNA_Ecto-sp13_S_contig1311.2537.1|Name=mRNA_Ecto-sp13_S_contig1311.2537.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=913bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1311:14063..14975+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGAATGCCCTGCTCGCGCGGAGGCAGATGGTGAGAGATCGATTTTTCCT
AGGAGACGCGCGCTGGTGGGGATAGGCCGCTGTGCGGTGTGAGTGGTTGG
CTTTGGAGGACCAGCAATTGAGAGACAGGGGTTGCTTCCAGCCGGGGGCG
TCACGGTCCGTTGCTTAAACTCTAGCCCAGCGTTTGATCTCACCAAACAG
ACGGCTTCGCTGCCCGTTTATGGTAGAAAAGACGGTTTGCTTACACCTCG
GCCATGTATTTTCCCCCCAACGCAAATCCTGTCCAAAATAAGGCGCTTGG
CAGCGCAGCCGCAGCAGTGGAGCCAGACCCATGTGGGCCCCACCGCGGCA
TGGCAGTCCAACTCGGATGCTGACGTCTAGGGATGCTTGTCTGCTGTGGA
TGGGTCTTGCACGTCCATGAATTCCGCTTGTTGCGGGCTGCCCTCACGCG
AACACAAAGCTGTGTCCATGGGGCGTACATCTGCTGCTGTGTTGCCCTGC
TGTGTGATGTGTTGCCTGGAGTCTCAAAAACCAGCAAATACAACACGCTC
ACTGCGTTCATGGCACCTCCCAGCTACGCTTGCAGATGTGGGAAACGGCG
GTAAACTACCGTGTTTGCTTTTCCGACTGGAGAAGACTACGTACGAATTC
CTGATCCCTCTTCTACCGAAAGTGCCGGGATGTGTCTATAAAATGCGGCA
GAGCGCGGTGCTGTTTGTTCTACGCGTTGTGTACTGCAACTCGAGCGAGC
CACCAGCAACAGCTTGAGCGTTCGAAAGTTTAAGTTTTGCTTGATCCGAA
GGGCTGAGGGCGCGTGTATATTTGCGTTCCAGTCTACTCCAAATTACCAC
AGGTGATACCATTGTCTGTCGAAGGGCCCACCACGGCTCTGCCGCGCCAC
CTTCGTTATGGGT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1311:14063..14975+

>mRNA_Ecto-sp13_S_contig1311.2537.1 ID=mRNA_Ecto-sp13_S_contig1311.2537.1|Name=mRNA_Ecto-sp13_S_contig1311.2537.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=351bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1311:14063..14975+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAATTCCGCTTGTTGCGGGCTGCCCTCACGCGAACACAAAGCTGTGTC
CATGGGGCGTACATCTGCTGCTGTGTTGCCCTGCTGTGTGATGTGTTGCC
TGGAGTCTCAAAAACCAGCAAATACAACACGCTCACTGCGTTCATGGCAC
CTCCCAGCTACGCTTGCAGATGTGGGAAACGGCGGTAAACTACCGTGTTT
GCTTTTCCGACTGGAGAAGACTACGTACGAATTCCTGATCCCTCTTCTAC
CGAAAGTGCCGGGATGTGTCTATAAAATGCGGCAGAGCGCGGTGCTGTTT
GTTCTACGCGTTGTGTACTGCAACTCGAGCGAGCCACCAGCAACAGCTTG
A
back to top