mRNA_Ecto-sp13_S_contig13100.2533.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13100.2533.1
Unique NamemRNA_Ecto-sp13_S_contig13100.2533.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13100.2533.1 vs. uniprot
Match: D7FZK5_ECTSI (AP-3 complex subunit delta n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZK5_ECTSI)

HSP 1 Score: 622 bits (1604), Expect = 5.670e-212
Identity = 334/356 (93.82%), Postives = 338/356 (94.94%), Query Frame = 1 
Query:    1 GMVTKRNLEDLVLNLLQHVARAEGTYRDELIAKIILVCSRDKYAYLSNFRWYTGVLIDLSRVEGSKHGDALALQLTDVSLRVEEVREYALHKSVGLLLEPSLISGRSCTTMKQVLGAAAWIVGEYCRPHLETVARNHRRRQRVWFDIIQALLAPEASALPPRTQAVYVQNALKVLIAMCQACPDDGELGRTLDMVPGRLRALMKSPHMEVQERASTAYHLLVSYSIAKEVEDGGEAFQPGEGGTANGTGXXXXXXXPEGGSDGDEKLAQGMKGNGAANGQAA-PPVVLDLLGMDPSPSDGAAAGDGGGAEAVANGKEGTVAPGAMLTSMALVPSMVGPVGAARGAASEMAALCGEV 1065
            GMVTKRNLEDLVLNLLQHVARAEGTYRDELIAKIILVCSRDKYAYLSNFRWYTGVLIDLSRVEGSKHGDALALQLTDVSLRVEEVREYALHKSVGLLLEPSLISGRSC TMKQVLGAAAWIVGEYCRPHLETVARNHRRRQRVWFDI+QALLAPEASALPPRTQAVYVQNALKVLIAMCQACPDDGELGRTLDMVPGRLRALM+SPHMEVQERAST YHLLVSYSI KE ED GEAFQPGEGGTANGTGXXXXXXX        EKLA+ MKG GA NGQAA PPVVLDLLGMDPSPSDG AAGDGGGAEAVANGKEGTVAPGAMLTSMALVPSM+GPVGAARGAASEMAALCGEV
Sbjct:  358 GMVTKRNLEDLVLNLLQHVARAEGTYRDELIAKIILVCSRDKYAYLSNFRWYTGVLIDLSRVEGSKHGDALALQLTDVSLRVEEVREYALHKSVGLLLEPSLISGRSCCTMKQVLGAAAWIVGEYCRPHLETVARNHRRRQRVWFDIMQALLAPEASALPPRTQAVYVQNALKVLIAMCQACPDDGELGRTLDMVPGRLRALMQSPHMEVQERASTVYHLLVSYSITKEAEDSGEAFQPGEGGTANGTGXXXXXXXXXXXXXXXEKLAKEMKGKGAVNGQAAAPPVVLDLLGMDPSPSDGGAAGDGGGAEAVANGKEGTVAPGAMLTSMALVPSMMGPVGAARGAASEMAALCGEV 713
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BLAST of mRNA_Ecto-sp13_S_contig13100.2533.1 vs. uniprot
Match: A0A6S9KYZ5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9KYZ5_HETAK)

HSP 1 Score: 208 bits (529), Expect = 6.020e-58
Identity = 112/229 (48.91%), Postives = 150/229 (65.50%), Query Frame = 1 
Query:    1 GMVTKRNLEDLVLNLLQHVARAEGTYRDELIAKIILVCSRDKYAYLSNFRWYTGVLIDLSRVEGS-KHGDALALQLTDVSLRVEEVREYALHKSVGLLLEPSLISGRSCTTMKQVLGAAAWIVGEYCRPH--LETVARNHRRRQRVWFDIIQALLAPEASALPPRTQAVYVQNALKVLIAMCQACPDDGELGRTLDMVPGRLRALMKSPHMEVQERASTAYHLLVSYSI 678
            GMVTKRNLE+LV   LQHVA AEGTYRD L+ KI+ +C+RDKYAYL +F WY  VL+DL+ ++GS KHG  LA Q+ DV++RVE VR Y +   + L+L+P++I  RS   +  VL AAAW+VGEYC  +  LE  +      Q ++  +  AL  P  + L P  QA+Y+QNA KV ++ C  C  D +L + L M+  RLR LM+S H EVQERA+   HLL +  +
Sbjct:  358 GMVTKRNLEELVHKFLQHVATAEGTYRDTLVEKILFMCARDKYAYLEDFAWYMSVLVDLAHLQGSDKHGAQLAAQIRDVAMRVESVRAYTVEAMLKLVLDPTVILRRSA--LAGVLAAAAWVVGEYCEEYDELEDPSALAPEGQNLYLAVADALTHPNLTNLAPGVQALYLQNAFKVFVSACGEC-GDRDLDKLLGMLSIRLRILMQSVHAEVQERAAVFRHLLTALGV 583
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BLAST of mRNA_Ecto-sp13_S_contig13100.2533.1 vs. uniprot
Match: A0A7S4DBC7_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBC7_HETAK)

HSP 1 Score: 208 bits (529), Expect = 2.400e-56
Identity = 112/229 (48.91%), Postives = 150/229 (65.50%), Query Frame = 1 
Query:    1 GMVTKRNLEDLVLNLLQHVARAEGTYRDELIAKIILVCSRDKYAYLSNFRWYTGVLIDLSRVEGS-KHGDALALQLTDVSLRVEEVREYALHKSVGLLLEPSLISGRSCTTMKQVLGAAAWIVGEYCRPH--LETVARNHRRRQRVWFDIIQALLAPEASALPPRTQAVYVQNALKVLIAMCQACPDDGELGRTLDMVPGRLRALMKSPHMEVQERASTAYHLLVSYSI 678
            GMVTKRNLE+LV   LQHVA AEGTYRD L+ KI+ +C+RDKYAYL +F WY  VL+DL+ ++GS KHG  LA Q+ DV++RVE VR Y +   + L+L+P++I  RS   +  VL AAAW+VGEYC  +  LE  +      Q ++  +  AL  P  + L P  QA+Y+QNA KV ++ C  C  D +L + L M+  RLR LM+S H EVQERA+   HLL +  +
Sbjct:  358 GMVTKRNLEELVHKFLQHVATAEGTYRDTLVEKILFMCARDKYAYLEDFAWYMSVLVDLAHLQGSDKHGAQLAAQIRDVAMRVESVRAYTVEAMLKLVLDPTVILRRSA--LAGVLAAAAWVVGEYCEEYDELEDPSALAPEGQNLYLAVADALTHPNLTNLAPGVQALYLQNAFKVFVSACGEC-GDRDLDKLLGMLSIRLRILMQSVHAEVQERAAVFRHLLTALGV 583
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BLAST of mRNA_Ecto-sp13_S_contig13100.2533.1 vs. uniprot
Match: A0A7S2MSV1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MSV1_9STRA)

HSP 1 Score: 199 bits (505), Expect = 2.740e-53
Identity = 112/242 (46.28%), Postives = 153/242 (63.22%), Query Frame = 1 
Query:    1 GMVTKRNLEDLVLNLLQHVARAEGTYRDELIAKIILVCSRDKYAYLSNFRWYTGVLIDLSRVEGSKHGDALALQLTDVSLRVEEVREYALHKSVGLLLEPSLISGRSCTTMKQVLGAAAWIVGEYCRPHL------ETVARNHRR---RQRVWFDIIQALLAPEASALPPRTQAVYVQNALKVLIAMCQACPDDGELGRTLDMVPGRLRALMKSPHMEVQERASTAYHLLVSYSIAKEVEDG 699
            GMVTKRN+E+LV  LL+ V  +EGTYRDELI+KII +CSR+KY +L++F WY  VL+DL+ V+GS HG  +A QL DV++RVE VR +A+   +GLL    L+ G+  +T+ +VL A+AWI+GEY   HL        VA    R   R   +  ++  L  P A+ LPP  Q VY+QNALKV  A  +   +DGE+   LD++  R+   M+S H+EVQERAS   HLL    +  +  DG
Sbjct:  357 GMVTKRNMEELVHKLLRFVLLSEGTYRDELISKIIFMCSRNKYEFLTDFAWYLSVLVDLATVQGSFHGKNVADQLIDVTVRVEPVRVFAVESMIGLLTNVKLMLGQGQSTIAEVLFASAWIIGEYA--HLIKALSKREVAEGETRVVPRHEPFRKVVDLLTHPRATNLPPHVQIVYMQNALKVFTAALRVS-EDGEVAAMLDLLRLRMHVFMQSIHVEVQERASAFKHLLTVLGMITDWSDG 595
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BLAST of mRNA_Ecto-sp13_S_contig13100.2533.1 vs. uniprot
Match: F0YKL7_AURAN (Adaptin_N domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YKL7_AURAN)

HSP 1 Score: 192 bits (488), Expect = 3.530e-52
Identity = 108/244 (44.26%), Postives = 143/244 (58.61%), Query Frame = 1 
Query:    1 GMVTKRNLEDLVLNLLQHVARAEGTYRDELIAKIILVCSRDKYAYLSNFRWYTGVLIDLSRVEGSKHGDALALQLTDVSLRVEEVREYALHKSVGLLLEPSLISGRSCTTMKQVLGAAAWIVGEYCRPHLETVARNHRR------------RQRVWFDIIQALLAPEASALPPRTQAVYVQNALKVLIAMCQACP-DDGELGRTLDMVPGRLRALMKSPHMEVQERASTAYHLLVSYSIAKEVE 693
            GMVT++NLE+LV+ LL HV RAEG YRDELI++I+ +CSRDKY+YLS+F WY  VL+ L+ + GS HG  LA QL D+++RV  VR YA    V LLL+  L  G+   ++  VL AAAWI GEY     +                    ++R  + ++  L  P  + LP R Q VY+QNALKVL   C     DDGEL   L +   RL   ++S H+EVQERA+    LLV++   K  E
Sbjct:  349 GMVTRKNLEELVVKLLAHVNRAEGAYRDELISRIVHMCSRDKYSYLSDFVWYLSVLVRLAHLRGSAHGALLAEQLVDITMRVRPVRRYAARDMVCLLLDDKLAVGQGLESIADVLSAAAWIAGEYAAELFDDDXXXXXXXXXXXGDLPKFPKERPRYRVVDILTHPRVTNLPARVQNVYLQNALKVLALFCDDDDGDDGELEDCLTLAARRLDVFLQSVHVEVQERATAFRGLLVAFGALKPTE 592
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BLAST of mRNA_Ecto-sp13_S_contig13100.2533.1 vs. uniprot
Match: A0A7S3ZNU4_9STRA (AP-3 complex subunit delta n=4 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZNU4_9STRA)

HSP 1 Score: 181 bits (459), Expect = 5.860e-47
Identity = 102/236 (43.22%), Postives = 140/236 (59.32%), Query Frame = 1 
Query:    1 GMVTKRNLEDLVLNLLQHVARAEGTYRDELIAKIILVCSRDKYAYLSNFRWYTGVLIDLSRVEGS-KHGDALALQLTDVSLRVEEVREYALHKSVGLLLEPSLISGRSCTTMKQVLGAAAWIVGEYCRPHLETVARNHRRR------------QRVWFDIIQALLAPEASALPPRTQAVYVQNALKVLIAMCQACPDDGELGRTLDMVPGRLRALMKSPHMEVQERASTAYHLLVS 669
            GMVT++ LEDLVL LL HV +A+G YRDEL+++IILVCSRDKYAYLS+F WY  VL+ L+R+ G+ KHG  LA QL D+++RV  VR +A   ++ LLL+  L  G+    +  VL AAAWI GE+    LE                     ++    ++  L  P  + LP R QAVY+QN LKV+  +  +  D  EL   L ++  RL   ++S H+EVQERA+    LL +
Sbjct:  358 GMVTRKTLEDLVLKLLAHVRQADGAYRDELVSRIILVCSRDKYAYLSDFVWYLNVLVQLARLRGAQKHGALLASQLVDITMRVRPVRAFAARDALRLLLDDKLEVGQGLAAVGDVLAAAAWIAGEFASHLLEEEDEXXXXXXXXXDALPAFPSEQPRVTLVDVLTRPGTTRLPARVQAVYLQNTLKVITVL--SSEDSDELSPALQLLSERLDVFLRSGHVEVQERATALKSLLTT 591
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BLAST of mRNA_Ecto-sp13_S_contig13100.2533.1 vs. uniprot
Match: A0A4D9D9W4_9STRA (Adaptin_N domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D9W4_9STRA)

HSP 1 Score: 179 bits (455), Expect = 2.250e-46
Identity = 111/255 (43.53%), Postives = 146/255 (57.25%), Query Frame = 1 
Query:    1 GMVTKRNLEDLVLNLLQHVARAEGTYRDELIAKIILVCSRDKYAYLSNFRWYTGVLIDLSRVEGSKHGDALALQLTDVSLRVEEVREYALHKSVGLLLEPS-LISGRSCTTMKQVLGAAAWIVGEYCR---------------------------PHL-ETVARNHRRRQRVWFDIIQALLAPEASALPPRTQAVYVQNALKVLIAMCQACPDDGELGRTLDMVPGRLRALMKSPHMEVQERASTAYHLLVSYSI 678
            GMVT+RNL +LV  L+QHV  AEG YRDE++ KI+ +CSRD+YAYLS+  WY  VL+DL+ V+G  HG  +A QL DVS+R E VR YA+   +GLL + S L  G+S  TM  VL AA WI+GEY                             P L ET A+       V+  ++ A L P  + LP   Q VY+Q+ALKV+ A  +  PDD  L   L ++  RL   ++S H+EVQERA+T  +LL S  I
Sbjct:  360 GMVTRRNLTELVHKLMQHVLLAEGPYRDEIVRKILFMCSRDRYAYLSDVSWYLSVLVDLAYVQGPVHGPLVAAQLIDVSVRAEVVRGYAVRCMLGLLRDSSDLFLGQSQATMAHVLYAAGWIIGEYADQLPGQGREEGGEEXXXXXXXXXKQAAGPGLMETSAQPSAAP--VFAQVLAAYLDPRVTNLPEDVQVVYMQSALKVVAAAPRHVPDDAGLEGLLLILRARLSVFLQSIHIEVQERAATMRNLLASLGI 612
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BLAST of mRNA_Ecto-sp13_S_contig13100.2533.1 vs. uniprot
Match: W7TQ06_9STRA (Ap-3 complex subunit delta-1 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQ06_9STRA)

HSP 1 Score: 178 bits (452), Expect = 4.740e-46
Identity = 110/255 (43.14%), Postives = 146/255 (57.25%), Query Frame = 1 
Query:    1 GMVTKRNLEDLVLNLLQHVARAEGTYRDELIAKIILVCSRDKYAYLSNFRWYTGVLIDLSRVEGSKHGDALALQLTDVSLRVEEVREYALHKSVGLLLEPS-LISGRSCTTMKQVLGAAAWIVGEYCR---------------------------PHL-ETVARNHRRRQRVWFDIIQALLAPEASALPPRTQAVYVQNALKVLIAMCQACPDDGELGRTLDMVPGRLRALMKSPHMEVQERASTAYHLLVSYSI 678
            GMVT+RNL +LV  L+QHV  AEG YRDE++ KI+ +CSRD+YAYLS+  WY  VL+DL+ V+G  HG  +A QL DVS+R E VR YA+   +GLL + S L  G+S  TM  VL AA WI+GEY                             P L ET A+       V+  ++ A L P  + LP   Q VY+Q+ALKV+ A  +  P+D  L   L ++  RL   ++S H+EVQERA+T  +LL S  I
Sbjct:  360 GMVTRRNLTELVHKLMQHVLLAEGPYRDEIVRKILFMCSRDRYAYLSDVSWYLSVLVDLAYVQGPVHGPLVAAQLIDVSVRAEVVRGYAVRCMLGLLRDSSDLFLGQSQATMAHVLYAAGWIIGEYADQLPGQGREEGGEEXXXXXXXXXKQAAGPGLMETSAQPSAAP--VFAQVLAAYLDPRVTNLPEDVQVVYMQSALKVVAAAPRHVPEDAGLEGLLLILRARLSVFLQSVHIEVQERAATMRNLLASLGI 612
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BLAST of mRNA_Ecto-sp13_S_contig13100.2533.1 vs. uniprot
Match: A0A6U5KFT7_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5KFT7_9STRA)

HSP 1 Score: 177 bits (450), Expect = 9.900e-46
Identity = 98/238 (41.18%), Postives = 148/238 (62.18%), Query Frame = 1 
Query:    1 GMVTKRNLEDLVLNLLQHVARAEGTYRDELIAKIILVCSRDKYAYLSNFRWYTGVLIDLSRVEGSKHGDALALQLTDVSLRVEEVREYALHKSVGLLLEPSLISGRSCTTMKQVLGAAAWIVGEYCRPHLETVARNHRRRQR---------VWFDIIQALLAPEASALPPRTQAVYVQNALKVLIAMCQACPD---DGELGRTLDMVPGRLRALMKSPHMEVQERASTAYHLLVSYSI 678
            GM TKRNL +LV  L+QH+  AEG YRDELI+K+IL+CSRDKY  LS+F WY  +L+ L+ V G+ HG  +A Q+TDV+LRV  VRE++++K +G+++    +  +   TM ++L AAAW++GEY     + VA+ ++ +           ++   I A+++  +  L  RT A+YVQ+ALK+  A C  C +   D EL   LD++   L    +S  +EVQER++T YH L S  +
Sbjct:  288 GMATKRNLIELVTQLMQHIQLAEGPYRDELISKVILMCSRDKYGMLSDFAWYISILVTLASVRGTVHGHLVARQMTDVTLRVLPVREFSVYKMLGIIIGFEKVLSKGHDTMYEILPAAAWVLGEYSASIHDLVAQRNQGQLSGLNCAGYAGLYHATISAMMSSFSLTLRGRTPAIYVQSALKIFAAAC--CSNSISDSELVACLDVLRESLPIWAESVDVEVQERSTTFYHCLDSLGL 523
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BLAST of mRNA_Ecto-sp13_S_contig13100.2533.1 vs. uniprot
Match: UPI0013040D85 (AP-3 complex subunit delta-1 isoform X2 n=2 Tax=Nomia melanderi TaxID=2448451 RepID=UPI0013040D85)

HSP 1 Score: 168 bits (425), Expect = 2.020e-42
Identity = 98/239 (41.00%), Postives = 154/239 (64.44%), Query Frame = 1 
Query:    1 GMVTKRNLEDLVLNLLQHVARAEGT-YRDELIAKIILVCSRDKYAYLSNFRWYTGVLIDLSRVEGSKHGDALALQLTDVSLRVEEVREYALHKSVGLLLEPSLISGRSCTTMKQVLGAAAWIVGEYCRPHLETVARNHRRRQRVWFDIIQALLAPEASALPPRTQAVYVQNALKVLIA-MCQACPD-DGELGRTLDMVPGRLRALMKSPHMEVQERASTAYHLLV----SYSIAKEVED 696
            GMV+K+NL ++V  L+ H+ +AEGT YRDEL++KII +CS++ Y +++ F WY  VL++L+R+EG+KHG  +A+QL DV++RV+ +R+YA+H+   LL +  L++G+   TM +VL AAAWI GE+     + +A             +Q++L  +AS+LP   QAVYV N LK+  A +C+A  D D E    +  +  ++ A + S  +EVQER+S+A  LL     S  +A+E+ D
Sbjct:  366 GMVSKKNLMEIVRKLMVHMDKAEGTAYRDELLSKIIQICSQNNYQFVTYFEWYISVLVELTRMEGTKHGPLVAIQLLDVAIRVQAIRKYAVHQCALLLEDSYLLTGQPRATMSEVLYAAAWICGEFSSELEDPLAT------------LQSMLRSQASSLPGHIQAVYVHNILKLATATLCKAEKDGDTETMTQIYELKDKIAAFVCSGDLEVQERSSSAMVLLECLKESPGLAQELMD 592
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13100.2533.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZK5_ECTSI5.670e-21293.82AP-3 complex subunit delta n=2 Tax=Ectocarpus TaxI... [more]
A0A6S9KYZ5_HETAK6.020e-5848.91Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4DBC7_HETAK2.400e-5648.91Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S2MSV1_9STRA2.740e-5346.28Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
F0YKL7_AURAN3.530e-5244.26Adaptin_N domain-containing protein (Fragment) n=1... [more]
A0A7S3ZNU4_9STRA5.860e-4743.22AP-3 complex subunit delta n=4 Tax=Pelagomonas cal... [more]
A0A4D9D9W4_9STRA2.250e-4643.53Adaptin_N domain-containing protein n=1 Tax=Nannoc... [more]
W7TQ06_9STRA4.740e-4643.14Ap-3 complex subunit delta-1 n=2 Tax=Nannochlorops... [more]
A0A6U5KFT7_9STRA9.900e-4641.18Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
UPI0013040D852.020e-4241.00AP-3 complex subunit delta-1 isoform X2 n=2 Tax=No... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13100contigEcto-sp13_S_contig13100:408..4739 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score622.5
Seed ortholog evalue1.3e-175
Seed eggNOG ortholog2880.D7FZK5
Preferred nameAP3D1
Model size1083
KEGG koko:K12396
KEGG Pathwayko04142,map04142
Hectar predicted targeting categoryother localisation
GOsGO:0000041,GO:0002376,GO:0002475,GO:0002682,GO:0002684,GO:0002694,GO:0002696,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005770,GO:0005783,GO:0005794,GO:0005795,GO:0005798,GO:0005802,GO:0006725,GO:0006726,GO:0006727,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006829,GO:0006886,GO:0006887,GO:0006892,GO:0006895,GO:0006897,GO:0006900,GO:0006903,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007032,GO:0007033,GO:0007034,GO:0007040,GO:0007041,GO:0007220,GO:0007275,GO:0007568,GO:0008055,GO:0008057,GO:0008088,GO:0008089,GO:0008104,GO:0008150,GO:0008152,GO:0008333,GO:0008340,GO:0008565,GO:0009058,GO:0009605,GO:0009893,GO:0009987,GO:0010008,GO:0010256,GO:0010259,GO:0010468,GO:0010604,GO:0010628,GO:0010970,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016182,GO:0016192,GO:0016197,GO:0016482,GO:0018130,GO:0019222,GO:0019438,GO:0019538,GO:0019748,GO:0019882,GO:0019884,GO:0021700,GO:0022407,GO:0022409,GO:0030001,GO:0030117,GO:0030119,GO:0030123,GO:0030154,GO:0030155,GO:0030424,GO:0030705,GO:0031090,GO:0031410,GO:0031503,GO:0031982,GO:0031984,GO:0032438,GO:0032501,GO:0032502,GO:0032594,GO:0032879,GO:0032940,GO:0032991,GO:0033036,GO:0033059,GO:0033060,GO:0033267,GO:0033365,GO:0034613,GO:0035646,GO:0036465,GO:0036466,GO:0042440,GO:0042441,GO:0042592,GO:0042886,GO:0042995,GO:0043005,GO:0043170,GO:0043195,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043324,GO:0043473,GO:0043474,GO:0043476,GO:0043482,GO:0043485,GO:0043679,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044306,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044456,GO:0044463,GO:0044464,GO:0044550,GO:0045184,GO:0045202,GO:0045580,GO:0045582,GO:0045595,GO:0045597,GO:0045619,GO:0045621,GO:0045785,GO:0046148,GO:0046152,GO:0046158,GO:0046483,GO:0046634,GO:0046635,GO:0046637,GO:0046638,GO:0046903,GO:0046907,GO:0047496,GO:0048003,GO:0048007,GO:0048066,GO:0048069,GO:0048072,GO:0048193,GO:0048475,GO:0048489,GO:0048490,GO:0048499,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048753,GO:0048757,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050793,GO:0050794,GO:0050801,GO:0050863,GO:0050865,GO:0050867,GO:0050870,GO:0050896,GO:0050931,GO:0051094,GO:0051136,GO:0051138,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051249,GO:0051251,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051668,GO:0051716,GO:0060255,GO:0060966,GO:0060967,GO:0060968,GO:0060969,GO:0061024,GO:0061088,GO:0061462,GO:0065007,GO:0065008,GO:0070142,GO:0070727,GO:0070838,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072384,GO:0072511,GO:0072594,GO:0072657,GO:0072665,GO:0072666,GO:0080171,GO:0097458,GO:0097479,GO:0097480,GO:0097708,GO:0098588,GO:0098657,GO:0098791,GO:0098793,GO:0098796,GO:0098805,GO:0098830,GO:0098930,GO:0098943,GO:0099003,GO:0099111,GO:0099504,GO:0099514,GO:0099517,GO:0099518,GO:0099532,GO:0099632,GO:0099637,GO:0120025,GO:0120038,GO:0150034,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1902105,GO:1902107,GO:1903037,GO:1903039,GO:1903706,GO:1903708,GO:1990019,GO:2000026
Exons6
EggNOG free text desc.intracellular protein transport
EggNOG OGsCOG4354@1,KOG1059@2759
Ec32 ortholog descriptionCoatomer protein complex,delta sub-unit
Ec32 orthologEc-01_010090.1
Cds size1080
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13100.2533.1prot_Ecto-sp13_S_contig13100.2533.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13100 411..4739 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462701.8143628-UTR-Ecto-sp13_S_contig13100:407..4101681462701.8143628-UTR-Ecto-sp13_S_contig13100:407..410Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13100 408..410 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462701.8415782-CDS-Ecto-sp13_S_contig13100:410..5171681462701.8415782-CDS-Ecto-sp13_S_contig13100:410..517Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13100 411..517 +
1681462701.853313-CDS-Ecto-sp13_S_contig13100:1924..21261681462701.853313-CDS-Ecto-sp13_S_contig13100:1924..2126Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13100 1925..2126 +
1681462701.8668277-CDS-Ecto-sp13_S_contig13100:2640..27751681462701.8668277-CDS-Ecto-sp13_S_contig13100:2640..2775Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13100 2641..2775 +
1681462701.8773532-CDS-Ecto-sp13_S_contig13100:3213..33931681462701.8773532-CDS-Ecto-sp13_S_contig13100:3213..3393Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13100 3214..3393 +
1681462701.8865447-CDS-Ecto-sp13_S_contig13100:3988..42021681462701.8865447-CDS-Ecto-sp13_S_contig13100:3988..4202Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13100 3989..4202 +
1681462701.8955479-CDS-Ecto-sp13_S_contig13100:4497..47391681462701.8955479-CDS-Ecto-sp13_S_contig13100:4497..4739Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13100 4498..4739 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13100.2533.1

>prot_Ecto-sp13_S_contig13100.2533.1 ID=prot_Ecto-sp13_S_contig13100.2533.1|Name=mRNA_Ecto-sp13_S_contig13100.2533.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=360bp
MVTKRNLEDLVLNLLQHVARAEGTYRDELIAKIILVCSRDKYAYLSNFRW
YTGVLIDLSRVEGSKHGDALALQLTDVSLRVEEVREYALHKSVGLLLEPS
LISGRSCTTMKQVLGAAAWIVGEYCRPHLETVARNHRRRQRVWFDIIQAL
LAPEASALPPRTQAVYVQNALKVLIAMCQACPDDGELGRTLDMVPGRLRA
LMKSPHMEVQERASTAYHLLVSYSIAKEVEDGGEAFQPGEGGTANGTGGG
GGSSSPEGGSDGDEKLAQGMKGNGAANGQAAPPVVLDLLGMDPSPSDGAA
AGDGGGAEAVANGKEGTVAPGAMLTSMALVPSMVGPVGAARGAASEMAAL
CGEVGVFSS*
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mRNA from alignment at Ecto-sp13_S_contig13100:408..4739+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13100.2533.1 ID=mRNA_Ecto-sp13_S_contig13100.2533.1|Name=mRNA_Ecto-sp13_S_contig13100.2533.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4332bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13100:408..4739+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCATGGTCACGAAGCGGAACTTGGAGGACCTCGTGCTCAACCTTCTTCA
GCACGTGGCGAGGGCGGAGGGCACCTACCGCGACGAGCTCATCGCGAAGA
TTATCCTTGTGTGAGTCCTCTTGATCTATTGATGCCGTTCGTCAGAGATG
GTCCTTGTGGGAGTCCTCTTGCGGCGTTCTTGAGGATCCTGCAAGTCACG
CGTAACACCGGCCGTACGAATACGTGGTACGACCTGCGTGTGGGTTTGGG
GTCAGCGCATCATGTCGGGAAGGCTGTGGGAGAGTCGGCCACGAGGCAGG
TCATCCAAGATACCACATCTCGCCTGGCGATCACCTCACCAATCCGCTGA
CGCCGAGCCAAGGGATGGCGACCGCAGGGACTGTGTTGGCCATGTTCTCT
GACGTCCTTCCCAACGCGCACGGGGTACCAATAGAGTTGTTTGTTGCGGA
TATGGCGAGATTCAAAAAGACGGTCTACACCGTTTTCGCCCGGCAGCATC
GGAGGTACATCGCGGAATTGTTTCGTACTCCATGATTGCGTGGGGGTCTC
AGCACAAGGGATGAGTTGTTGTTGCGTCCCCAGTCGTGTCCGTTTCTCTT
CACGGAACATGCTGACCTGGCCCCTTTTACGGCTTCGACCGTGGCACCAA
GTCAACCGGCCCCCCGTGCTGCTTCTCCGTCAGCCAAAAGAAGCACCGTG
GAACAGCGCCGTCGATCTCATCTGCGACGTTTGCAACAACTTGGCGCACA
TGATCACAAGGCCTTGACGCACTTTTTTTCATCTCCGACTGCGAACCTGT
GCGAACCTGTGCGAACCTGCATCGATGTTTCGTTTGCTCTTGACGTGTTT
GTATGTCAATCTACTGCTTACCACACTTCCTCTGATCCTCGATCTCTGCA
CACTTCACCACTTCTCAATGTTGTGGTCAACAAAACTTCAGCCTTCCATA
TTTTAGCTACGGATGTATATTACGCGAAGACCACCCCCCCGCGGAGCACC
CCTCGCAGTTTCCATGATCCTTGCGGAAGTCCTCTGCATCCTTGCTTCTT
AACTACTTGTCATGCAATTGATATTATTGGTGCCGAGATCTGGTGGACTG
CTTCCTGGGACTGGTGTCAAGACTCGCCTCTTTGTCTTGCGCTTTCGTTT
CGAGCACCTCGTCCTCCGTGGTCTCGACAAGGCCGTTTGGCTTGAGTTTC
TGCCCACGGGCAGATGCTGGTCGTGAGTCCCTTCTGTATTCAAGCAAGGA
TCGTTCTTGTGTGCATTGTTAAAACTTATGTATCCATATTTTATACCGAT
CTTTTCCGGCCGTCTTCCTCTCCTCTGGCACTCTCTATGGCTTTCTCTCG
TGTGTCTGTCTCTGTCTCCATCTCCTTCCGTACTACCCTCCTTTGGTTGC
ATAGCAATCACGTGTAGTGTATCAATCCTTCTCAATATCTACGGTACAAC
ATAATAGCGGATGTGTGAGAATATGTGCCCACCCCCCACCCCCCCCCCAA
CCTTGCCTCTTGAACAGGTGTTCCCGTGACAAGTACGCGTACCTGTCGAA
CTTCCGATGGTACACGGGGGTGCTGATAGACCTGAGTCGAGTCGAGGGCT
CCAAGCACGGGGACGCGCTCGCGCTGCAGCTGACAGACGTGTCTCTCAGA
GTGGAGGAGGTCCGAGAGTACGCCCTGCACAAGTCGGTCGGCCTTCTGCT
CGAGCCCTCGCTCATTTCGGTAAGAAAGATGTAATATCCATTGATGTTGT
TGTTGCTGCTGTTGTTGTTGTTGCTGCTGCTGCTGTTGTTGCCAATATTG
TTGTCGTTGTTTATGCCTTAAATGGACGAAGTTGATCGCTTAAAATGGAC
GGAAAGGTTGCGGAATTGCGAGCAGCATGTACCCCCCCGGGATAATGGTG
TTCTCTTGTCTCCTACCAAACTTGCGACACCTCCCTTTGCCTATCCAAGA
TACACGCGCCGCTGGTTTGCCACTCTGTTCCCGTGTAATTGCAGCCTGTA
TTCTGTTGTACACGAGAACGAATGAAAAACTAATAACTATCAGGGTAGTT
TTACATTTTGTTCCTCTTGTCTCCGGGTACCAATGCCACTTATTCACAAC
CCCGTGCCCCCCCCCCCGCTCTCCTTCTCCCTCGTGAAACGCATGCACAC
GTACTGATTTGTTTTGTGTACTGTTTTACGTTGGGAACACCCGCATGACG
AATACTGCTGTCCCCGACATCGGACAACGACAGGGTCGGTCGTGTACCAC
GATGAAGCAAGTGTTGGGGGCGGCGGCGTGGATAGTGGGGGAGTACTGCC
GGCCGCACCTCGAGACCGTGGCAAGGAATCACAGGAGAAGACAGCGGGTG
TGGTTTGACATTATACAGGTTAGTGCTTCGTTTTTTGAAATTATGTTCTT
CCCCGTTGTTTTTCGTTTCTTAAACGGTGCTTTTTCTTTTTCATGGGTAG
AAACGTCCTTGTCTATTACGGAAAACGAAGAACAAACAAATGATATTCTG
CGTTTTGATACCTCCGGCCAGAATGCCCCGAGCTTGCGCCCCGAATCGCA
CAGCAGTCGGCCTCTTTGTTTATACTCCTCTTCTTCGCGTTTATGGCTGG
CTCGTGATCCCTGAGCAGGCTATTCCGTCTTTCCTTTCATCTGTGTGATT
CGCTTCCAGTATGTAGTTTCGGGTAGCGCCATGGGTGCCCCCCGTTGACC
CTTGTTTTAGTGGAGTTTTTTCTTCTGATCTGTGTGGTTCGCTTCTTGCA
TGCATATGTGCCCCCTCCCCCCGTTCTTATTTTGCGCTCTTTTTTTTTTT
CGGCAGGCGCTACTCGCGCCAGAGGCCAGCGCGCTCCCGCCCCGCACGCA
GGCGGTGTACGTGCAGAACGCCCTCAAGGTGCTGATCGCCATGTGCCAGG
CGTGCCCGGACGATGGGGAGCTTGGGCGAACGCTGGACATGGTGCCCGGT
CGTCTTCGAGCCCTCATGAAGTCCCCGCATATGGAGGTGTATTGTTGACC
GCTGCGGCGGTGTTTTTGTTTTAGTCGCGTTTGAACCTCAGCGAGCGGTG
CATGTCCAAACTGATGTTTTTTCCGGTGTCTTGTACGCGTGAAAGTATCT
GTGTTTGGGAGTCGTGGTTGCGAAGAGTCTGTAAGGAGGTCGGTGTTAGA
CGGCATTAGTGTCAGGTCAGGTGCGCGTTAAGCCTTTTACAAGGGAGGCG
TGCAGTGGCGTGGGTGCGTGTGGACGGCAAAAAGATTGTCAGTTATTGCG
TTCATCGAATCGAAGAGGATGATGGCAGCTCGGGTTCGATTGTTGGGTTC
TGGACACGGCCCGGAAAGTAGGTGCCATCTGTGTGTTGGTCGTCTCATCT
TTTCTTAGCGCCAGTGCACACACCTTTCGGTGAGTGCACTCGGCGTACGG
TGTCAACATCGAGGAGTTCTTATTTTCGCTTGTCGTTCAAGTGCCCCACC
TTTCCTCCTGAGATGCTTGCCTTCGTTGGTTACCGCAACCAGGGTTCAGC
TGTTCCCGTGCCTTCGTCGTGAATCTCGCGTATTTGTCTCGCATCCACCC
GCTGACTTCCCTGCGCCCCTGCCGCCCCCAGGTGCAAGAACGAGCCTCGA
CGGCGTACCACTTGCTAGTGTCGTACAGTATCGCCAAGGAGGTGGAGGAC
GGCGGGGAGGCGTTCCAGCCCGGGGAAGGGGGAACGGCGAATGGTACCGG
TGGTGGTGGGGGGTCATCGTCGCCGGAGGGCGGTAGCGATGGCGACGAGA
AGCTTGCACAGGGGATGAAGGGCAATGGCGCCGCTAACGGCCAGGGTGAG
AGGTTGTAGTACATGTAGAGGAGGAGACGCGGGGCCATTACAAAGTCAGA
GGAATGAAGACTTGTGTGGGGTCGGGGTTTGGGGCACTGCAGTGTCTTGT
GCGTTGAGGGCCGTGAGTGTTTTTTCTTTTAGGCCGTGGACCTCGATTCT
CTATTATTTGCCGCGAGCGTTGATTGCGTCGGAAAAATTCGTTCTATAAT
TGCCACCCCCTTTGTCCCTTACCTATGGGTCGACTCCTCTGCTACCGCTT
TGCTCTATACCCGCGCGCTCGTTTTTTTGTTCGGCGCCAGCAGCTCCTCC
GGTCGTGCTAGACCTCTTGGGGATGGACCCAAGCCCATCGGATGGCGCTG
CTGCTGGAGACGGCGGTGGCGCCGAAGCTGTTGCGAACGGCAAGGAAGGG
ACGGTGGCACCTGGTGCGATGCTGACCTCAATGGCGCTCGTTCCGTCTAT
GGTGGGGCCCGTAGGGGCGGCGAGAGGGGCAGCCTCTGAGATGGCCGCCT
TGTGCGGAGAGGTGGGTGTCTTTTCTTCCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13100:408..4739+

>mRNA_Ecto-sp13_S_contig13100.2533.1 ID=mRNA_Ecto-sp13_S_contig13100.2533.1|Name=mRNA_Ecto-sp13_S_contig13100.2533.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1080bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13100:408..4739+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCACGAAGCGGAACTTGGAGGACCTCGTGCTCAACCTTCTTCAGCA
CGTGGCGAGGGCGGAGGGCACCTACCGCGACGAGCTCATCGCGAAGATTA
TCCTTGTGTGTTCCCGTGACAAGTACGCGTACCTGTCGAACTTCCGATGG
TACACGGGGGTGCTGATAGACCTGAGTCGAGTCGAGGGCTCCAAGCACGG
GGACGCGCTCGCGCTGCAGCTGACAGACGTGTCTCTCAGAGTGGAGGAGG
TCCGAGAGTACGCCCTGCACAAGTCGGTCGGCCTTCTGCTCGAGCCCTCG
CTCATTTCGGGTCGGTCGTGTACCACGATGAAGCAAGTGTTGGGGGCGGC
GGCGTGGATAGTGGGGGAGTACTGCCGGCCGCACCTCGAGACCGTGGCAA
GGAATCACAGGAGAAGACAGCGGGTGTGGTTTGACATTATACAGGCGCTA
CTCGCGCCAGAGGCCAGCGCGCTCCCGCCCCGCACGCAGGCGGTGTACGT
GCAGAACGCCCTCAAGGTGCTGATCGCCATGTGCCAGGCGTGCCCGGACG
ATGGGGAGCTTGGGCGAACGCTGGACATGGTGCCCGGTCGTCTTCGAGCC
CTCATGAAGTCCCCGCATATGGAGGTGCAAGAACGAGCCTCGACGGCGTA
CCACTTGCTAGTGTCGTACAGTATCGCCAAGGAGGTGGAGGACGGCGGGG
AGGCGTTCCAGCCCGGGGAAGGGGGAACGGCGAATGGTACCGGTGGTGGT
GGGGGGTCATCGTCGCCGGAGGGCGGTAGCGATGGCGACGAGAAGCTTGC
ACAGGGGATGAAGGGCAATGGCGCCGCTAACGGCCAGGCAGCTCCTCCGG
TCGTGCTAGACCTCTTGGGGATGGACCCAAGCCCATCGGATGGCGCTGCT
GCTGGAGACGGCGGTGGCGCCGAAGCTGTTGCGAACGGCAAGGAAGGGAC
GGTGGCACCTGGTGCGATGCTGACCTCAATGGCGCTCGTTCCGTCTATGG
TGGGGCCCGTAGGGGCGGCGAGAGGGGCAGCCTCTGAGATGGCCGCCTTG
TGCGGAGAGGTGGGTGTCTTTTCTTCCTGA
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