mRNA_Ecto-sp13_S_contig13099.2530.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig13099.2530.1 vs. uniprot
Match: D7G474_ECTSI (Agmatine deiminase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G474_ECTSI) HSP 1 Score: 527 bits (1357), Expect = 3.310e-187 Identity = 252/261 (96.55%), Postives = 256/261 (98.08%), Query Frame = 1
Query: 4 RTWMLWPVRPDTWKESARPAQLAFAAVAKAIARFEPVTVGVPSSQLQSAQPLLDATGVGIAVIEQDDAWIRDTGPTFVVGGTRIESSERQRGMRNVRGVDWSFNAWGGEFGGCFSNWDKDDAIASTVLGLVGADRYKANMVLEGGSVHVDGEGTVITTEECLLNPNRNPTFTKDEIEKYLREYLGAKLVLWLGQGVTGDVDTDGHVDNLVAFVRPGEVVLHWTDDAEDPQHAVSLDALRRLEAFIDARGRQLKVHKCPLPG 786
RTWMLWPVRPDTWKESARPAQLAFAAVAKAIARFEPVTVGVPSSQLQSAQPLLDATG+GIAVIEQDDAWIRDTGPTFVVGGTR ESSERQRGMRNVRGVDWSFNAWGGEFGGCFSNWDKDDAIASTVLGLVGADRYKANMVLEGGSVHVDGEGTVITTEECLLNPNRNPTFTK EIEK+LR+YLG KLVLWLGQGVTGDVDTDGHVDNLVAFV PGEVVLHWTD+ EDPQHAVSLDALRRLEAFIDARGRQLKVHKCPLPG
Sbjct: 31 RTWMLWPVRPDTWKESARPAQLAFAAVAKAIARFEPVTVGVPSSQLQSAQPLLDATGIGIAVIEQDDAWIRDTGPTFVVGGTRSESSERQRGMRNVRGVDWSFNAWGGEFGGCFSNWDKDDAIASTVLGLVGADRYKANMVLEGGSVHVDGEGTVITTEECLLNPNRNPTFTKSEIEKHLRDYLGVKLVLWLGQGVTGDVDTDGHVDNLVAFVHPGEVVLHWTDNTEDPQHAVSLDALRRLEAFIDARGRQLKVHKCPLPG 291
BLAST of mRNA_Ecto-sp13_S_contig13099.2530.1 vs. uniprot
Match: A0A6H5JHS9_9PHAE (AIH protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHS9_9PHAE) HSP 1 Score: 307 bits (786), Expect = 2.000e-103 Identity = 161/215 (74.88%), Postives = 163/215 (75.81%), Query Frame = 1
Query: 13 MLWPVRPDTWKESARPAQLAFAAVAKAIARFEPVTVGVPSSQLQSAQPLLDATGVGIAVIEQDDAWIRDTGPTFVVGGTRIESSERQRGMRNVRGVDWSFNAWGGEFGGCFSNWDKDDAIASTVLGLVGADRYKANMVLEGGSVHVDGEGTVITTEECLLNPNRNPTFTKDEIEKYLREYLGAKLVLWLGQGVTGDVDTDGHVDNLVAFVRPGEV 657
MLWPVRPDTWKESARPAQLAFAAVAKAIARFEPVTVGVPSSQLQSAQPLLDATGV IAVIEQDDAWIRDTGPTFVVGGTRIESSERQRGMRNVRGVDWSFNAWGGEFGGCFS+WDKDDAIASTVLGL+GADRYKANMVLEG VTGDVDTDGHVDNLVAFVRPGEV
Sbjct: 1 MLWPVRPDTWKESARPAQLAFAAVAKAIARFEPVTVGVPSSQLQSAQPLLDATGVDIAVIEQDDAWIRDTGPTFVVGGTRIESSERQRGMRNVRGVDWSFNAWGGEFGGCFSSWDKDDAIASTVLGLIGADRYKANMVLEG---------------------------------------------------VTGDVDTDGHVDNLVAFVRPGEV 164
BLAST of mRNA_Ecto-sp13_S_contig13099.2530.1 vs. uniprot
Match: A0A2P6V231_9CHLO (Agmatine deiminase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V231_9CHLO) HSP 1 Score: 309 bits (791), Expect = 4.520e-101 Identity = 147/260 (56.54%), Postives = 190/260 (73.08%), Query Frame = 1
Query: 4 RTWMLWPVRPDTWKESARPAQLAFAAVAKAIARFEPVTVGVPSSQLQSAQPLLDATGVGIAVIEQDDAWIRDTGPTFVVGGTRIESSERQRGMRNVRGVDWSFNAWGGEFGGCFSNWDKDDAIASTVLGLVGADRYKANMVLEGGSVHVDGEGTVITTEECLLNPNRNPTFTKDEIEKYLREYLGAKLVLWLGQGVTGDVDTDGHVDNLVAFVRPGEVVLHWTDDAEDPQHAVSLDALRRLEAFIDARGRQLKVHKCPLP 783
RTWM WP RPD W++ PAQ AFAAVA AIA+FEPVTV +Q+ +A+ +L A+ V + I QDDAW+RDTGPTFV+ R E+S G R++ G+DW FNAWGG GG ++ W++D A+A+TVL A R+ +V+EGGS+H DGEGT++TTEECLLNPNRNP+ ++DEIE +LR LG + V+WL +G+ GD DT+GH+DN F RPG V+L WTDDA DPQH +S++ALR L DA+GRQLKV K P P
Sbjct: 39 RTWMGWPERPDNWRQGGAPAQRAFAAVAAAIAQFEPVTVAANEAQVANARAMLPAS-VEVVCIPQDDAWLRDTGPTFVL---REEAS----GQRSLGGIDWVFNAWGGGEGGMYATWERDQAVAATVLQAASARRFACPIVMEGGSLHADGEGTLLTTEECLLNPNRNPSLSRDEIEGWLRRMLGVQKVIWLPRGLCGDDDTNGHIDNFACFARPGTVLLAWTDDASDPQHEISVEALRVLSQATDAKGRQLKVVKVPCP 290
BLAST of mRNA_Ecto-sp13_S_contig13099.2530.1 vs. uniprot
Match: A0A078MFJ6_9PSED (Agmatine deiminase n=2 Tax=Pseudomonadaceae TaxID=135621 RepID=A0A078MFJ6_9PSED) HSP 1 Score: 304 bits (778), Expect = 1.480e-99 Identity = 147/262 (56.11%), Postives = 179/262 (68.32%), Query Frame = 1
Query: 4 RTWMLWPVRPDTWKESARPAQLAFAAVAKAIARFEPVTVGVPSSQLQSAQPLLDATGVGIAVIEQDDAWIRDTGPTFVVGGTRIESSERQRGMRNVRGVDWSFNAWGGEFGGCFSNWDKDDAIASTVLGLVGADRYKAN-MVLEGGSVHVDGEGTVITTEECLLNPNRNPTFTKDEIEKYLREYLGAKLVLWLGQGVTGDVDTDGHVDNLVAFVRPGEVVLHWTDDAEDPQHAVSLDALRRLEAFIDARGRQLKVHKCPLPG 786
+TWM+WP RPD W+ + PAQ AFA VAKAIA FEPVTVGV ++Q A LLD + + + DDAW+RDTGPTFV G +RGVDW+FNAWGG GG +S WD+DD +A +LGL RY+ VLEGG++HVDGEGT+ITTEECLLN NRNP + EIE+ LREYLG ++WL +G+ D +TDGHVDN FVRPGEV+L WTDD DP HA ALR LE DA+GR+L VH+ P+PG
Sbjct: 24 QTWMIWPERPDNWRLAGEPAQAAFAEVAKAIASFEPVTVGVSAAQYARANQLLDHPAIRVVELSSDDAWVRDTGPTFVTNG-----------QGGLRGVDWTFNAWGGLDGGLYSPWDRDDQVADKILGLERCPRYRTEGFVLEGGAIHVDGEGTLITTEECLLNSNRNPHLQRHEIEQMLREYLGVDSIIWLPEGLYND-ETDGHVDNFCCFVRPGEVLLAWTDDDSDPNHARCQAALRVLETTRDAQGRELVVHRMPIPG 273
BLAST of mRNA_Ecto-sp13_S_contig13099.2530.1 vs. uniprot
Match: A0A534D6J5_9GAMM (Putative agmatine deiminase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A534D6J5_9GAMM) HSP 1 Score: 303 bits (775), Expect = 6.160e-99 Identity = 150/259 (57.92%), Postives = 182/259 (70.27%), Query Frame = 1
Query: 10 WMLWPVRPDTWKESARPAQLAFAAVAKAIARFEPVTVGVPSSQLQSAQPLLDATGVGIAVIEQDDAWIRDTGPTFVVGGTRIESSERQRGMRNVRGVDWSFNAWGGEFGGCFSNWDKDDAIASTVLGLVGADRYKANMVLEGGSVHVDGEGTVITTEECLLNPNRNPTFTKDEIEKYLREYLGAKLVLWLGQGVTGDVDTDGHVDNLVAFVRPGEVVLHWTDDAEDPQHAVSLDALRRLEAFIDARGRQLKVHKCPLPG 786
WMLWP RPD W+E+ARPAQLAFA VA AIARFEPVTVGV + +A+ LL A V + + DDAW+RD GPT VV G RG VRGVDW FNAWGG GG + WD+DD +A VL + DRY+A +V EGG++HVDG+GT + TEECLLN NRNP +++IE+ LR+YLG ++WLG+GV D +TDGH+DNL FVRPGEV L WTD DPQHA+S DA RL DARGR+LKV + P+PG
Sbjct: 27 WMLWPERPDNWREAARPAQLAFAQVAAAIARFEPVTVGVSNPHYTAARALLPAD-VRVVEMAHDDAWMRDVGPTCVVDG---------RGT--VRGVDWRFNAWGGLAGGLYFPWDQDDLVARKVLEIERLDRYRAALVNEGGAIHVDGDGTAMVTEECLLNANRNPRLAREDIERCLRDYLGVSHMIWLGRGVFND-ETDGHIDNLACFVRPGEVCLTWTDRRRDPQHAISFDAWERLHEARDARGRRLKVQRLPMPG 272
BLAST of mRNA_Ecto-sp13_S_contig13099.2530.1 vs. uniprot
Match: A0A7U7I7N6_9PSED (Agmatine deiminase n=2 Tax=Pseudomonas TaxID=286 RepID=A0A7U7I7N6_9PSED) HSP 1 Score: 302 bits (774), Expect = 6.560e-99 Identity = 150/262 (57.25%), Postives = 184/262 (70.23%), Query Frame = 1
Query: 4 RTWMLWPVRPDTWKESARPAQLAFAAVAKAIARFEPVTVGVPSSQLQSAQPLLDATGVGIAVIEQDDAWIRDTGPTFVVGGTRIESSERQRGMRNVRGVDWSFNAWGGEFGGCFSNWDKDDAIASTVLGLVGADRYKAN-MVLEGGSVHVDGEGTVITTEECLLNPNRNPTFTKDEIEKYLREYLGAKLVLWLGQGVTGDVDTDGHVDNLVAFVRPGEVVLHWTDDAEDPQHAVSLDALRRLEAFIDARGRQLKVHKCPLPG 786
+TWM+WP RPD W+ +PAQ AF AVAKAIARFEPVTV V + Q ++A+ LDA + + I DDAW+RDTGPTFVV +RQ G VRGVDW+FNAWGG GG ++NW +DD +AS +L + DRY+ VLEGGS+HVDGEGT+ITTEECLLN NRNP +++EIE LRE+L V+WL G+ D +TDGHVDN +VRPGEV+L WTDD DP H A+R LE DA+GRQL VHK P+PG
Sbjct: 24 QTWMVWPERPDNWRLGGKPAQAAFTAVAKAIARFEPVTVCVSAGQYENARARLDADNIRVVEITTDDAWVRDTGPTFVV--------DRQGG---VRGVDWTFNAWGGLDGGLYANWVRDDQVASKILEIERCDRYRTEGFVLEGGSIHVDGEGTLITTEECLLNRNRNPHLSREEIEAVLREHLAIDTVIWLPDGLFND-ETDGHVDNFCCYVRPGEVLLAWTDDPADPNHPRCQAAMRVLETARDAKGRQLVVHKMPIPG 273
BLAST of mRNA_Ecto-sp13_S_contig13099.2530.1 vs. uniprot
Match: A0A2W4M3D4_9PROT (Putative agmatine deiminase n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4M3D4_9PROT) HSP 1 Score: 302 bits (773), Expect = 1.160e-98 Identity = 151/259 (58.30%), Postives = 180/259 (69.50%), Query Frame = 1
Query: 10 WMLWPVRPDTWKESARPAQLAFAAVAKAIARFEPVTVGVPSSQLQSAQPLLDATGVGIAVIEQDDAWIRDTGPTFVVGGTRIESSERQRGMRNVRGVDWSFNAWGGEFGGCFSNWDKDDAIASTVLGLVGADRYKANMVLEGGSVHVDGEGTVITTEECLLNPNRNPTFTKDEIEKYLREYLGAKLVLWLGQGVTGDVDTDGHVDNLVAFVRPGEVVLHWTDDAEDPQHAVSLDALRRLEAFIDARGRQLKVHKCPLPG 786
WMLWP RPD W+ A+PAQ AFAAVA AIA EPVTVGV Q +A+ +L T V + + DDAW+RD GPTFVV +RG R RGVDW FNAWGG GG + WD+D +A VL + G DRY+A VLEGG++HVDG+GT++TTEECLLNPNRNP + ++E L EYLG V+WLG+GV D +TDGH+DNL FVRPGEV L WTDD DPQ+ +SLDA RL DARGR+LKVHK P PG
Sbjct: 27 WMLWPERPDNWRLGAKPAQQAFAAVAAAIATGEPVTVGVSGRQFVNARAMLPET-VRVVELSSDDAWMRDVGPTFVVD---------RRGER--RGVDWGFNAWGGIAGGLYFPWDQDALVARKVLEVEGCDRYRAPFVLEGGAIHVDGQGTLLTTEECLLNPNRNPQLDRGQLEILLHEYLGVTHVIWLGKGVVDD-ETDGHIDNLCCFVRPGEVALTWTDDKRDPQYRISLDAYERLMEARDARGRRLKVHKLPQPG 272
BLAST of mRNA_Ecto-sp13_S_contig13099.2530.1 vs. uniprot
Match: A0A1H6AT50_9GAMM (Putative agmatine deiminase n=2 Tax=Marinobacterium TaxID=48075 RepID=A0A1H6AT50_9GAMM) HSP 1 Score: 301 bits (771), Expect = 1.540e-98 Identity = 144/260 (55.38%), Postives = 178/260 (68.46%), Query Frame = 1
Query: 4 RTWMLWPVRPDTWKESARPAQLAFAAVAKAIARFEPVTVGVPSSQLQSAQPLLDATGVGIAVIEQDDAWIRDTGPTFVVGGTRIESSERQRGMRNVRGVDWSFNAWGGEFGGCFSNWDKDDAIASTVLGLVGADRYKANMVLEGGSVHVDGEGTVITTEECLLNPNRNPTFTKDEIEKYLREYLGAKLVLWLGQGVTGDVDTDGHVDNLVAFVRPGEVVLHWTDDAEDPQHAVSLDALRRLEAFIDARGRQLKVHKCPLP 783
R WM+WP R D W++ A PAQ AF AVAKAIA FEPVTVG +SQ AQ LD G+ + I DDAW RDTGPTFV G + VR VDW FNAWGGE GG +++WDKD+ +A+ + + G DRY A+ VLEGGS+HVDGEGT+ITTEECLLNPNRNP ++ ++E+ L +YLG V+WL +G+ D +TDGHVDN FV PGE+VL WTDD +P + AL +E DA+GR+LKVHK PLP
Sbjct: 23 RVWMIWPERTDNWRDGAVPAQQAFTAVAKAIAEFEPVTVGASASQYDRAQLALDYPGISVVEISSDDAWARDTGPTFVSNG------------KTVRAVDWRFNAWGGENGGLYASWDKDERVAAKMAAVAGCDRYAADFVLEGGSIHVDGEGTLITTEECLLNPNRNPHLSRADLEQLLGDYLGVSKVIWLPEGLYND-ETDGHVDNCCCFVAPGELVLAWTDDPANPNYERCRAALAVIEQSRDAKGRELKVHKMPLP 269
BLAST of mRNA_Ecto-sp13_S_contig13099.2530.1 vs. uniprot
Match: A0A537YNC7_9ACTN (Putative agmatine deiminase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A537YNC7_9ACTN) HSP 1 Score: 301 bits (771), Expect = 1.810e-98 Identity = 151/259 (58.30%), Postives = 184/259 (71.04%), Query Frame = 1
Query: 10 WMLWPVRPDTWKESARPAQLAFAAVAKAIARFEPVTVGVPSSQLQSAQPLLDATGVGIAVIEQDDAWIRDTGPTFVVGGTRIESSERQRGMRNVRGVDWSFNAWGGEFGGCFSNWDKDDAIASTVLGLVGADRYKANMVLEGGSVHVDGEGTVITTEECLLNPNRNPTFTKDEIEKYLREYLGAKLVLWLGQGVTGDVDTDGHVDNLVAFVRPGEVVLHWTDDAEDPQHAVSLDALRRLEAFIDARGRQLKVHKCPLPG 786
WM WP RPD W+ A+PAQ A+AAVA AIA EPVT+ V +Q ++ + LL A V + I DDAWIRD GPTFV+G G R RGVDW FNAWGG GG + WD+D+ +A+ VL + G DRY+A +VLEGG++HVDGEGTV+TTEECLLNPNRNP +K++IE+ L EYLGA+ VLWLG GV D +TDGHVDNL F PG+V+L W+DD +DPQHA+S DA RLEA DARGR L+V P PG
Sbjct: 27 WMAWPERPDNWRLGAKPAQEAYAAVAAAIAESEPVTMAVSDAQFENCRALLPAE-VRVVEISSDDAWIRDHGPTFVIGA----------GGR--RGVDWHFNAWGGTDGGLYFPWDRDERVAAKVLEIEGDDRYRAPIVLEGGAIHVDGEGTVLTTEECLLNPNRNPDLSKEQIERVLLEYLGAEKVLWLGAGVFED-ETDGHVDNLACFAAPGKVLLTWSDDEDDPQHAISHDARERLEAATDARGRSLEVVFLPSPG 271
BLAST of mRNA_Ecto-sp13_S_contig13099.2530.1 vs. uniprot
Match: A0A1I4PGT0_9PSED (Agmatine deiminase n=1 Tax=Pseudomonas yangmingensis TaxID=1720063 RepID=A0A1I4PGT0_9PSED) HSP 1 Score: 301 bits (770), Expect = 2.410e-98 Identity = 147/263 (55.89%), Postives = 181/263 (68.82%), Query Frame = 1
Query: 1 LRTWMLWPVRPDTWKESARPAQLAFAAVAKAIARFEPVTVGVPSSQLQSAQPLLDATGVGIAVIEQDDAWIRDTGPTFVVGGTRIESSERQRGMRNVRGVDWSFNAWGGEFGGCFSNWDKDDAIASTVLGLVGADRYKAN-MVLEGGSVHVDGEGTVITTEECLLNPNRNPTFTKDEIEKYLREYLGAKLVLWLGQGVTGDVDTDGHVDNLVAFVRPGEVVLHWTDDAEDPQHAVSLDALRRLEAFIDARGRQLKVHKCPLPG 786
++TWMLWP RPD W+ A+PAQ AFA VA+AIA FEPVTVGV ++Q +A LD G+ + + DDAW+RDTGPTFVV G +RGVDW+FNAWGG GG + W +DD +A +L L RY+ VLEGG+ HVDGEGT+ITTEECLLN NRNP ++EIE L +YLG V+WL QG+ D +TDGHVDN FVRPGEV+L WTDD +DP HA ALR L+A DARGR+L+VH+ P+PG
Sbjct: 23 VQTWMLWPERPDNWRLGAKPAQAAFAEVARAIAGFEPVTVGVSAAQYGNASSQLDHPGIRVVELSSDDAWVRDTGPTFVVNG-----------QGGLRGVDWTFNAWGGFNGGLYWPWQRDDQVAGKILSLERCPRYRTEGFVLEGGAFHVDGEGTLITTEECLLNANRNPQLLREEIELKLADYLGIDKVIWLPQGLYND-ETDGHVDNFCCFVRPGEVLLAWTDDPDDPNHARCQTALRVLQASRDARGRELQVHRMPIPG 273 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13099.2530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig13099.2530.1 >prot_Ecto-sp13_S_contig13099.2530.1 ID=prot_Ecto-sp13_S_contig13099.2530.1|Name=mRNA_Ecto-sp13_S_contig13099.2530.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=258bp MLWPVRPDTWKESARPAQLAFAAVAKAIARFEPVTVGVPSSQLQSAQPLLback to top mRNA from alignment at Ecto-sp13_S_contig13099:3..3623- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig13099.2530.1 ID=mRNA_Ecto-sp13_S_contig13099.2530.1|Name=mRNA_Ecto-sp13_S_contig13099.2530.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3621bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13099:3..3623- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13099:3..3623- >mRNA_Ecto-sp13_S_contig13099.2530.1 ID=mRNA_Ecto-sp13_S_contig13099.2530.1|Name=mRNA_Ecto-sp13_S_contig13099.2530.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=774bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13099:3..3623- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |