mRNA_Ecto-sp13_S_contig13095.2529.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig13095.2529.1 vs. uniprot
Match: D7FNP3_ECTSI (Poly(A) binding protein, cytoplasmic 4-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNP3_ECTSI) HSP 1 Score: 510 bits (1313), Expect = 2.090e-172 Identity = 275/308 (89.29%), Postives = 278/308 (90.26%), Query Frame = 1
Query: 1 QVMSVSIKRDRATGKNLGYGFVKLSSHQQARAAKEAMQGVELGGRRVRVGWAQKNTSLYVGGLEGGAITTEMLVREFARFGPLDKELTTIKPGAKFGFVKYRYRLHAEAAKKELNGRPAFDGLCPGLEIEWNSVESSAQASETAGSEKSTAEXXXXXXXXXXX----KEGGTGGRTRGSSQHVGGVGGAHSRHPRGEVSGHTVHVQFEGDQGHVSAVNEVMIRKCFTKWEPVVDIVIPASRFNGVSPGPRQLPRCWAFVHFPPTPDGERAAANAIKDLNGTTISELRVHCTMSRGGGTRTGSPWRKQG 912
+VMSVSIKRDRATGKNLGYGFVKLSSHQ+ARAAKEAMQGVELGGRRVRVGWAQKNTSLYVGGLEGGAITTEMLVREFARFGPLDKELTTIKPGAKFGFVKYRYRLHAEAAKKELN RPAFDGLCP LEIEWNSVESSAQASETAGSEKSTA XXXXXXXXXXX KE AHSRHPRGEVS HTVHVQFEGDQGHVSAVNEVMIRKCFTKWEPVVDIVIPASRFNGVSPGPRQLPRCWAFVHFPPTPDGERAAA+AIK LNGTTISELRVHCTMSRGG TR GSPWRKQG
Sbjct: 230 RVMSVSIKRDRATGKNLGYGFVKLSSHQEARAAKEAMQGVELGGRRVRVGWAQKNTSLYVGGLEGGAITTEMLVREFARFGPLDKELTTIKPGAKFGFVKYRYRLHAEAAKKELNERPAFDGLCPSLEIEWNSVESSAQASETAGSEKSTAXXXXXXXXXXXXXXXXKEXXXXXXXXXXXXXXXXXXXAHSRHPRGEVSSHTVHVQFEGDQGHVSAVNEVMIRKCFTKWEPVVDIVIPASRFNGVSPGPRQLPRCWAFVHFPPTPDGERAAADAIKGLNGTTISELRVHCTMSRGGSTRAGSPWRKQG 537
BLAST of mRNA_Ecto-sp13_S_contig13095.2529.1 vs. uniprot
Match: A0A6H5L4J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4J2_9PHAE) HSP 1 Score: 512 bits (1319), Expect = 1.100e-171 Identity = 273/308 (88.64%), Postives = 275/308 (89.29%), Query Frame = 1
Query: 1 QVMSVSIKRDRATGKNLGYGFVKLSSHQQARAAKEAMQGVELGGRRVRVGWAQKNTSLYVGGLEGGAITTEMLVREFARFGPLDKELTTIKPGAKFGFVKYRYRLHAEAAKKELNGRPAFDGLCPGLEIEWNSVESSAQASETAGSEKSTAEXXXXXXXXXXX----KEGGTGGRTRGSSQHVGGVGGAHSRHPRGEVSGHTVHVQFEGDQGHVSAVNEVMIRKCFTKWEPVVDIVIPASRFNGVSPGPRQLPRCWAFVHFPPTPDGERAAANAIKDLNGTTISELRVHCTMSRGGGTRTGSPWRKQG 912
+VMSVSIKRDRATGKNLGYGFVKLSSHQ+ARAAKEAMQGVELGGRRVRVGWAQKNTSLYVGGLEGGAITTEMLVREFARFGPLDKELTTIKPGAKFGFVKYRYRLHAEAAKKELN RPAFDGLCP LEIEWNSVESSAQASETAGSEKSTAE XXXXXXXX K AHSRHPRGEVS HTVHVQFEGDQGHVSAVNEVMIRKCFTKWEPVVDIVIPASRFNGVSPGPRQLPRCWAFVHFPPTPDGERAAANAIKDLNGTTISELRVHCTMSRGGGT GSPW KQG
Sbjct: 93 RVMSVSIKRDRATGKNLGYGFVKLSSHQEARAAKEAMQGVELGGRRVRVGWAQKNTSLYVGGLEGGAITTEMLVREFARFGPLDKELTTIKPGAKFGFVKYRYRLHAEAAKKELNERPAFDGLCPSLEIEWNSVESSAQASETAGSEKSTAEDRTXXXXXXXXXXXXKXXXXXXXXXXXXXXXXXXXXAHSRHPRGEVSSHTVHVQFEGDQGHVSAVNEVMIRKCFTKWEPVVDIVIPASRFNGVSPGPRQLPRCWAFVHFPPTPDGERAAANAIKDLNGTTISELRVHCTMSRGGGTSAGSPWSKQG 400
BLAST of mRNA_Ecto-sp13_S_contig13095.2529.1 vs. uniprot
Match: A0A7S0DL40_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DL40_9EUKA) HSP 1 Score: 130 bits (328), Expect = 1.910e-29 Identity = 90/293 (30.72%), Postives = 133/293 (45.39%), Query Frame = 1
Query: 4 VMSVSIKRDRATGKNLGYGFVKLSSHQQARAAKEAMQGVELGGRRVRVGWAQKNTSLYVGGLEGGAITTEMLVREFARFGPLDKELTTIKPGAKFGFVKYRYRLHAEAAKKELNGRPAFDGLCPGLEIEWNSVESSAQASETAGSEKSTAEXXXXXXXXXXXKEGGTGGRTRGSSQHVGGVGGAHSRHPRGEVSGHTVHVQFEGDQG----HVSAVNEVMIRKCFTKWEPVVDIVIPASRFNGVSPGPRQLPRCWAFVHFPPTPDGERAAANAIKDLNGTTISELRVHCTMSR 870
V++V IKRDR T NLGYGFV+ +H+QA AK+A+ GVE+ GR++R GWAQ+NT+L+VG L+ I + F+R+G L + T K FG VK++ R +AE AK ELNG+ P + + W V H VHV+F+ + S ++E +++K F ++ V+ + +P N + + + FVHF T GE +A AI +L+GT I L V C R
Sbjct: 101 VVNVDIKRDRVTNNNLGYGFVQFETHEQALKAKKALHGVEVSGRKIRTGWAQRNTTLFVGDLDN-TIDATVYRTAFSRYGNLVDDETYFKVDKGFGMVKFKTRENAETAKVELNGKRIGQSKRP-VRVIWGDT----------------------------------------------------------SVQKHCVHVKFDVGKEVKSIQESEISEDVLQKVFQEYGQVLTVNLPRHSDNTL--------KGYGFVHFEDTEKGEESAKKAIANLSGTKIGRLVVQCNYGR 325
BLAST of mRNA_Ecto-sp13_S_contig13095.2529.1 vs. uniprot
Match: W7TSQ6_9STRA (Tia1 cytotoxic granule-associated rna binding protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TSQ6_9STRA) HSP 1 Score: 130 bits (326), Expect = 2.030e-28 Identity = 93/294 (31.63%), Postives = 143/294 (48.64%), Query Frame = 1
Query: 4 VMSVSIKRDRATGKNLGYGFVKLSSHQQARAAKEAMQGVELGGRRVRVGWAQKNTSLYVGGLEGGAITTEMLVREFARFGPLDKELTTIKPG--AKFGFVKYRYRLHAEAAKKELNGRPAFDGLCPGLEIEWNSVESSAQASETAGSEKSTAEXXXXXXXXXXXKEGGTGGRTRGSSQHVGGVGGAHSRHPRGEVSGHTVHVQFEGDQGHVSAVNEVMIRKCFTKWEPVVDIVIPASRFNGVSPGPRQLPRC---WAFVHFPPTPDGERAAANAIKDLNGTTISELRVHCTMSR 870
V V IKRD+ T +NLGYGFV++SSH+QA AKE MQG ++ GRR+R+GWAQ+NT+L++G L+ E L R F FG L + ++ G K+G VK+ R AE A++E++GR DG P + + W+ ++ + + + S + G S P ++VHV FE D G + V E +I F + ++ +++P S + C + FVHF + G A AI+ L G ++ +R+ C SR
Sbjct: 131 VEMVDIKRDKVTMRNLGYGFVQMSSHEQAAVAKERMQGADIQGRRIRIGWAQRNTTLFIGDLDEST-NVEDLHRTFGPFGLLYTNDSYLRQGKCGKYGSVKFMSRKDAETARREMHGRVLRDGTRP-IRVVWHHPQTITKKTGLSVPLPSNEQHSRELVHIPPPPPAGV----------------LVSSRP------YSVHVHFEAD-GMENLVTENLIYGLFAPFGQIIAVILPQGPGILCSDQNEDVSCCRRGYGFVHFTGSALGRLCAIEAIRTLQGEIVAGIRLQCAFSR 399
BLAST of mRNA_Ecto-sp13_S_contig13095.2529.1 vs. uniprot
Match: A0A7S3Z8S4_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z8S4_9EUKA) HSP 1 Score: 122 bits (306), Expect = 2.630e-26 Identity = 90/293 (30.72%), Postives = 133/293 (45.39%), Query Frame = 1
Query: 4 VMSVSIKRDRATGKNLGYGFVKLSSHQQARAAKEAMQGVELGGRRVRVGWAQKNTSLYVGGLEGGAITTEMLVREFARFGPLDKELTTIKPGAKFGFVKYRYRLHAEAAKKELNGRPAFDGLCPGLEIEWNSVESSAQASETAGSEKSTAEXXXXXXXXXXXKEGGTGGRTRGSSQHVGGVGGAHSRHPRGEVSGHTVHVQFE-GDQGHV---SAVNEVMIRKCFTKWEPVVDIVIPASRFNGVSPGPRQLPRCWAFVHFPPTPDGERAAANAIKDLNGTTISELRVHCTMSR 870
V++V IKRD+ T NLGYGFV+ +H++A AK+A+ GV + GR++R GWAQ+NT+L+VG L+ +E FAR+G L + T K FG VKY+ R +AE AK ELNG+ P + + W V H VHV+F+ G + S ++E ++K F+++ V + +P R N Q + + FVHF + GE +A AI +L+GT I L + C R
Sbjct: 134 VVNVDIKRDKVTHNNLGYGFVQFETHEEAVKAKKALHGVVVSGRKIRTGWAQRNTTLFVGDLDSFVDESEYRAA-FARYGSLVLDETYFKVDKGFGMVKYKTRENAETAKMELNGKKIGKSKRP-VRVIWGDT----------------------------------------------------------SVQKHCVHVKFDVGKEVKTIQDSDISEDDLQKVFSEYGQVQSVNLP--RHND------QSLKGYGFVHFEDSEKGEESAKKAIANLSGTKIGRLVIQCNYGR 358
BLAST of mRNA_Ecto-sp13_S_contig13095.2529.1 vs. uniprot
Match: A0A836CDW8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDW8_9STRA) HSP 1 Score: 120 bits (301), Expect = 2.460e-25 Identity = 67/133 (50.38%), Postives = 90/133 (67.67%), Query Frame = 1
Query: 1 QVMSVSIKRDRATGKNLGYGFVKLSSHQQARAAKEAMQGVELGGRRVRVGWAQKNTSLYVGGLEGGAITTEMLVREFARFGPLDKELTTIKP-GAKFGFVKYRYRLHAEAAKKELNGRPAFDGLCPGLEIEWN 396
+V++V+IKRDR+T KNLGYGFV++ SH +A AKE M E+ GRR+RVGWAQKN +L V GL G +T E + F FG L++E T + G+ VKYR RLHAE A+++LNG A G P L ++W+
Sbjct: 40 RVLTVNIKRDRSTSKNLGYGFVRMGSHAEACVAKERMHRAEVHGRRIRVGWAQKNAALAVSGLPDG-VTAEQVKALFRPFGALEEENTQLMTDGSGTAVVKYRNRLHAEDARRQLNGSQAL-GPAP-LRVDWS 169
BLAST of mRNA_Ecto-sp13_S_contig13095.2529.1 vs. uniprot
Match: A0A7S3DFR0_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3DFR0_9EUKA) HSP 1 Score: 116 bits (291), Expect = 1.750e-24 Identity = 59/136 (43.38%), Postives = 90/136 (66.18%), Query Frame = 1
Query: 1 QVMSVSIKRDRATGKNLGYGFVKLSSHQQARAAKEAMQGVELGGRRVRVGWAQKNTSLYVGGLEGGAITTEMLVREFARFGPLDKELTTIKPGAKFGFVKYRYRLHAEAAKKELNGRPAFDGLCPGLEIEWNSVES 408
+V+++ IKRDR T +LGYGFV+ + A AK+ + G +G R +R+GWAQKNT+L++G L+ ++T+E+L EF +FGPL +E T +K G +GFV++R R AE AK+E+ G+ F G + I W +S
Sbjct: 51 EVINIDIKRDRMTSNSLGYGFVEFQRFEDALEAKKQLSGARIGERAIRLGWAQKNTNLFIGDLDA-SVTSEILFNEFKQFGPLFEEDTFVKEGMSYGFVRFRKREDAETAKREMQGKN-FHGRV--IRIGWGDAKS 182
BLAST of mRNA_Ecto-sp13_S_contig13095.2529.1 vs. uniprot
Match: L8H825_ACACA (RNA recognition motif domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H825_ACACA) HSP 1 Score: 114 bits (285), Expect = 6.760e-24 Identity = 59/116 (50.86%), Postives = 83/116 (71.55%), Query Frame = 1
Query: 4 VMSVSIKRDRATGKNLGYGFVKLSSHQQARAAKEAMQGVELGGRRVRVGWAQKNTSLYVGGLEGGAITTEMLVREFARFGPLDKELTTIKPGAKFGFVKYRYRLHAEAAKKELNGR 351
V+SV IKRDR T +LGYGFV L S + A AAK+AM +GGR +R+GWAQKNT+L++G L+ +IT+ L F +FGP+ +E T +K +GFV++R+R HAE AK+E+N +
Sbjct: 88 VISVEIKRDRVTNYSLGYGFVLLKSREDAGAAKKAMHRQVVGGRAIRIGWAQKNTNLFIGDLDP-SITSAQLREVFRQFGPIYEEETFVK-NRNYGFVRFRHRKHAEMAKREMNNK 201
BLAST of mRNA_Ecto-sp13_S_contig13095.2529.1 vs. uniprot
Match: A0A7S0TF52_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Elphidium margaritaceum TaxID=933848 RepID=A0A7S0TF52_9EUKA) HSP 1 Score: 109 bits (273), Expect = 4.780e-23 Identity = 85/299 (28.43%), Postives = 127/299 (42.47%), Query Frame = 1
Query: 7 MSVSIKRDRATGKNLGYGFVKLSSHQQARAAKEAMQGVELGGRRVRVGWAQKNTSLYV---GGLEGGAITTEMLVREFARFGPLDKELTTIKPGAKFGFVKYRYRLHAEAAKKELNGRP-----AFDGLCPGLEIEWNSVESSAQASETAGSEKSTAEXXXXXXXXXXXKEGGTGGRTRGSSQHVGGVGGAHSRHPRGEVSGHTVHVQFEGDQGHVSAVNEVMIRKCFTKWEPVVDIVIPA---SRFNGVSPGPRQLPRCWAFVHFPPTPDGERAAANAIKDLNGTTISELRVHCTMSR 870
+ V IKRD+ T NLGYGFVK + A AK + G+E+ GR +R+GWAQKNT+L+V G +E IT E L F+ FGP+ +E T +K K+GFVK+++RLHAE AK L+G+ + + P + I W + VHVQFE + + E ++ F ++ V + +P R G + F+HF +GE +AA AI +L + I + + C +
Sbjct: 31 VEVDIKRDKVTKNNLGYGFVKFRNRCHAEQAKRKLNGLEIAGRAIRIGWAQKNTNLFVCLVGDVERH-ITGEHLREIFSEFGPIYEEDTFVKRN-KYGFVKFKHRLHAEKAKAALDGKHLLTKNGYKTMKP-VRIGWGDANTQRNC----------------------------------------------------------VHVQFEQNSASSVDLKEEDFKQQFQRFGVVNKVSLPRYSDKRLKG-----------YGFIHFEENDEGEESAARAITELTASPIKGVVIMCNFGK 257
BLAST of mRNA_Ecto-sp13_S_contig13095.2529.1 vs. uniprot
Match: X6NQC1_RETFI (Uncharacterized protein (Fragment) n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6NQC1_RETFI) HSP 1 Score: 108 bits (269), Expect = 7.740e-22 Identity = 92/321 (28.66%), Postives = 137/321 (42.68%), Query Frame = 1
Query: 4 VMSVSIKRDRATGKNLGYGFVKLSSHQQARAAKEAMQGVELGGRRVRVGWAQKNTSLYV------------GGLEG--------------GAITTEMLVREFARFGPLDKELTTIKPGAKFGFVKYRYRLHAEAAKKELNGR----PAFDGLCPG-LEIEWNSVESSAQASETAGSEKSTAEXXXXXXXXXXXKEGGTGGRTRGSSQHVGGVGGAHSRHPRGEVSGHTVHVQFEGDQ-GHVSAVNEVMIRKCFTKWEPVVDIVIPASRFNGVSPGPRQLPRCWAFVHFPPTPDGERAAANAIKDLNGTTISELRVHCTMSR 870
V +V IKRD+ T NLGYGFV S ++A AK M G+E+GGR +R+GWAQKNT+L+V GG+EG I E L F +FGP+ + T +K +GFVK+++R HAE AK L+G+ P D + I W + H + V+ HT + + + + G + E R+ F ++ VV + +P RF+ R+L + + F+HF DGE AAA AI L+ I+ + + C +
Sbjct: 13 VENVDIKRDKVTKNNLGYGFVTFKSREEAEKAKRNMHGMEIGGRTIRIGWAQKNTNLFVKAFLFVCLFAKGGGVEGCKLYLLRTVVGDLDSRIDAEHLKTIFKQFGPIYNDDTFVKNNG-YGFVKFKHRTHAEKAKATLDGKFLTIPGTDQQTQRPIRIGWGDANTQRNC--------------------------------------------VHVQFDSTHVTHHTGNSKKKKKKRGTQMDLKESDFREVFQRFGRVVKVSLP--RFSD-----RKL-KGYGFIHFEENDDGEEAAARAITTLSYGAINNVVMQCNFGK 280 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13095.2529.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig13095.2529.1 >prot_Ecto-sp13_S_contig13095.2529.1 ID=prot_Ecto-sp13_S_contig13095.2529.1|Name=mRNA_Ecto-sp13_S_contig13095.2529.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=437bp MSVSIKRDRATGKNLGYGFVKLSSHQQARAAKEAMQGVELGGRRVRVGWAback to top mRNA from alignment at Ecto-sp13_S_contig13095:636..4745+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig13095.2529.1 ID=mRNA_Ecto-sp13_S_contig13095.2529.1|Name=mRNA_Ecto-sp13_S_contig13095.2529.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4110bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13095:636..4745+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13095:636..4745+ >mRNA_Ecto-sp13_S_contig13095.2529.1 ID=mRNA_Ecto-sp13_S_contig13095.2529.1|Name=mRNA_Ecto-sp13_S_contig13095.2529.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1311bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13095:636..4745+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |