mRNA_Ecto-sp13_S_contig13095.2529.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13095.2529.1
Unique NamemRNA_Ecto-sp13_S_contig13095.2529.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig13095.2529.1 vs. uniprot
Match: D7FNP3_ECTSI (Poly(A) binding protein, cytoplasmic 4-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNP3_ECTSI)

HSP 1 Score: 510 bits (1313), Expect = 2.090e-172
Identity = 275/308 (89.29%), Postives = 278/308 (90.26%), Query Frame = 1
Query:    1 QVMSVSIKRDRATGKNLGYGFVKLSSHQQARAAKEAMQGVELGGRRVRVGWAQKNTSLYVGGLEGGAITTEMLVREFARFGPLDKELTTIKPGAKFGFVKYRYRLHAEAAKKELNGRPAFDGLCPGLEIEWNSVESSAQASETAGSEKSTAEXXXXXXXXXXX----KEGGTGGRTRGSSQHVGGVGGAHSRHPRGEVSGHTVHVQFEGDQGHVSAVNEVMIRKCFTKWEPVVDIVIPASRFNGVSPGPRQLPRCWAFVHFPPTPDGERAAANAIKDLNGTTISELRVHCTMSRGGGTRTGSPWRKQG 912
            +VMSVSIKRDRATGKNLGYGFVKLSSHQ+ARAAKEAMQGVELGGRRVRVGWAQKNTSLYVGGLEGGAITTEMLVREFARFGPLDKELTTIKPGAKFGFVKYRYRLHAEAAKKELN RPAFDGLCP LEIEWNSVESSAQASETAGSEKSTA XXXXXXXXXXX    KE                   AHSRHPRGEVS HTVHVQFEGDQGHVSAVNEVMIRKCFTKWEPVVDIVIPASRFNGVSPGPRQLPRCWAFVHFPPTPDGERAAA+AIK LNGTTISELRVHCTMSRGG TR GSPWRKQG
Sbjct:  230 RVMSVSIKRDRATGKNLGYGFVKLSSHQEARAAKEAMQGVELGGRRVRVGWAQKNTSLYVGGLEGGAITTEMLVREFARFGPLDKELTTIKPGAKFGFVKYRYRLHAEAAKKELNERPAFDGLCPSLEIEWNSVESSAQASETAGSEKSTAXXXXXXXXXXXXXXXXKEXXXXXXXXXXXXXXXXXXXAHSRHPRGEVSSHTVHVQFEGDQGHVSAVNEVMIRKCFTKWEPVVDIVIPASRFNGVSPGPRQLPRCWAFVHFPPTPDGERAAADAIKGLNGTTISELRVHCTMSRGGSTRAGSPWRKQG 537          
BLAST of mRNA_Ecto-sp13_S_contig13095.2529.1 vs. uniprot
Match: A0A6H5L4J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4J2_9PHAE)

HSP 1 Score: 512 bits (1319), Expect = 1.100e-171
Identity = 273/308 (88.64%), Postives = 275/308 (89.29%), Query Frame = 1
Query:    1 QVMSVSIKRDRATGKNLGYGFVKLSSHQQARAAKEAMQGVELGGRRVRVGWAQKNTSLYVGGLEGGAITTEMLVREFARFGPLDKELTTIKPGAKFGFVKYRYRLHAEAAKKELNGRPAFDGLCPGLEIEWNSVESSAQASETAGSEKSTAEXXXXXXXXXXX----KEGGTGGRTRGSSQHVGGVGGAHSRHPRGEVSGHTVHVQFEGDQGHVSAVNEVMIRKCFTKWEPVVDIVIPASRFNGVSPGPRQLPRCWAFVHFPPTPDGERAAANAIKDLNGTTISELRVHCTMSRGGGTRTGSPWRKQG 912
            +VMSVSIKRDRATGKNLGYGFVKLSSHQ+ARAAKEAMQGVELGGRRVRVGWAQKNTSLYVGGLEGGAITTEMLVREFARFGPLDKELTTIKPGAKFGFVKYRYRLHAEAAKKELN RPAFDGLCP LEIEWNSVESSAQASETAGSEKSTAE   XXXXXXXX    K                    AHSRHPRGEVS HTVHVQFEGDQGHVSAVNEVMIRKCFTKWEPVVDIVIPASRFNGVSPGPRQLPRCWAFVHFPPTPDGERAAANAIKDLNGTTISELRVHCTMSRGGGT  GSPW KQG
Sbjct:   93 RVMSVSIKRDRATGKNLGYGFVKLSSHQEARAAKEAMQGVELGGRRVRVGWAQKNTSLYVGGLEGGAITTEMLVREFARFGPLDKELTTIKPGAKFGFVKYRYRLHAEAAKKELNERPAFDGLCPSLEIEWNSVESSAQASETAGSEKSTAEDRTXXXXXXXXXXXXKXXXXXXXXXXXXXXXXXXXXAHSRHPRGEVSSHTVHVQFEGDQGHVSAVNEVMIRKCFTKWEPVVDIVIPASRFNGVSPGPRQLPRCWAFVHFPPTPDGERAAANAIKDLNGTTISELRVHCTMSRGGGTSAGSPWSKQG 400          
BLAST of mRNA_Ecto-sp13_S_contig13095.2529.1 vs. uniprot
Match: A0A7S0DL40_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DL40_9EUKA)

HSP 1 Score: 130 bits (328), Expect = 1.910e-29
Identity = 90/293 (30.72%), Postives = 133/293 (45.39%), Query Frame = 1
Query:    4 VMSVSIKRDRATGKNLGYGFVKLSSHQQARAAKEAMQGVELGGRRVRVGWAQKNTSLYVGGLEGGAITTEMLVREFARFGPLDKELTTIKPGAKFGFVKYRYRLHAEAAKKELNGRPAFDGLCPGLEIEWNSVESSAQASETAGSEKSTAEXXXXXXXXXXXKEGGTGGRTRGSSQHVGGVGGAHSRHPRGEVSGHTVHVQFEGDQG----HVSAVNEVMIRKCFTKWEPVVDIVIPASRFNGVSPGPRQLPRCWAFVHFPPTPDGERAAANAIKDLNGTTISELRVHCTMSR 870
            V++V IKRDR T  NLGYGFV+  +H+QA  AK+A+ GVE+ GR++R GWAQ+NT+L+VG L+   I   +    F+R+G L  + T  K    FG VK++ R +AE AK ELNG+       P + + W                                                              V  H VHV+F+  +       S ++E +++K F ++  V+ + +P    N +        + + FVHF  T  GE +A  AI +L+GT I  L V C   R
Sbjct:  101 VVNVDIKRDRVTNNNLGYGFVQFETHEQALKAKKALHGVEVSGRKIRTGWAQRNTTLFVGDLDN-TIDATVYRTAFSRYGNLVDDETYFKVDKGFGMVKFKTRENAETAKVELNGKRIGQSKRP-VRVIWGDT----------------------------------------------------------SVQKHCVHVKFDVGKEVKSIQESEISEDVLQKVFQEYGQVLTVNLPRHSDNTL--------KGYGFVHFEDTEKGEESAKKAIANLSGTKIGRLVVQCNYGR 325          
BLAST of mRNA_Ecto-sp13_S_contig13095.2529.1 vs. uniprot
Match: W7TSQ6_9STRA (Tia1 cytotoxic granule-associated rna binding protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TSQ6_9STRA)

HSP 1 Score: 130 bits (326), Expect = 2.030e-28
Identity = 93/294 (31.63%), Postives = 143/294 (48.64%), Query Frame = 1
Query:    4 VMSVSIKRDRATGKNLGYGFVKLSSHQQARAAKEAMQGVELGGRRVRVGWAQKNTSLYVGGLEGGAITTEMLVREFARFGPLDKELTTIKPG--AKFGFVKYRYRLHAEAAKKELNGRPAFDGLCPGLEIEWNSVESSAQASETAGSEKSTAEXXXXXXXXXXXKEGGTGGRTRGSSQHVGGVGGAHSRHPRGEVSGHTVHVQFEGDQGHVSAVNEVMIRKCFTKWEPVVDIVIPASRFNGVSPGPRQLPRC---WAFVHFPPTPDGERAAANAIKDLNGTTISELRVHCTMSR 870
            V  V IKRD+ T +NLGYGFV++SSH+QA  AKE MQG ++ GRR+R+GWAQ+NT+L++G L+      E L R F  FG L    + ++ G   K+G VK+  R  AE A++E++GR   DG  P + + W+  ++  + +  +    S  +              G                   S  P      ++VHV FE D G  + V E +I   F  +  ++ +++P       S     +  C   + FVHF  +  G   A  AI+ L G  ++ +R+ C  SR
Sbjct:  131 VEMVDIKRDKVTMRNLGYGFVQMSSHEQAAVAKERMQGADIQGRRIRIGWAQRNTTLFIGDLDEST-NVEDLHRTFGPFGLLYTNDSYLRQGKCGKYGSVKFMSRKDAETARREMHGRVLRDGTRP-IRVVWHHPQTITKKTGLSVPLPSNEQHSRELVHIPPPPPAGV----------------LVSSRP------YSVHVHFEAD-GMENLVTENLIYGLFAPFGQIIAVILPQGPGILCSDQNEDVSCCRRGYGFVHFTGSALGRLCAIEAIRTLQGEIVAGIRLQCAFSR 399          
BLAST of mRNA_Ecto-sp13_S_contig13095.2529.1 vs. uniprot
Match: A0A7S3Z8S4_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z8S4_9EUKA)

HSP 1 Score: 122 bits (306), Expect = 2.630e-26
Identity = 90/293 (30.72%), Postives = 133/293 (45.39%), Query Frame = 1
Query:    4 VMSVSIKRDRATGKNLGYGFVKLSSHQQARAAKEAMQGVELGGRRVRVGWAQKNTSLYVGGLEGGAITTEMLVREFARFGPLDKELTTIKPGAKFGFVKYRYRLHAEAAKKELNGRPAFDGLCPGLEIEWNSVESSAQASETAGSEKSTAEXXXXXXXXXXXKEGGTGGRTRGSSQHVGGVGGAHSRHPRGEVSGHTVHVQFE-GDQGHV---SAVNEVMIRKCFTKWEPVVDIVIPASRFNGVSPGPRQLPRCWAFVHFPPTPDGERAAANAIKDLNGTTISELRVHCTMSR 870
            V++V IKRD+ T  NLGYGFV+  +H++A  AK+A+ GV + GR++R GWAQ+NT+L+VG L+     +E     FAR+G L  + T  K    FG VKY+ R +AE AK ELNG+       P + + W                                                              V  H VHV+F+ G +      S ++E  ++K F+++  V  + +P  R N       Q  + + FVHF  +  GE +A  AI +L+GT I  L + C   R
Sbjct:  134 VVNVDIKRDKVTHNNLGYGFVQFETHEEAVKAKKALHGVVVSGRKIRTGWAQRNTTLFVGDLDSFVDESEYRAA-FARYGSLVLDETYFKVDKGFGMVKYKTRENAETAKMELNGKKIGKSKRP-VRVIWGDT----------------------------------------------------------SVQKHCVHVKFDVGKEVKTIQDSDISEDDLQKVFSEYGQVQSVNLP--RHND------QSLKGYGFVHFEDSEKGEESAKKAIANLSGTKIGRLVIQCNYGR 358          
BLAST of mRNA_Ecto-sp13_S_contig13095.2529.1 vs. uniprot
Match: A0A836CDW8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDW8_9STRA)

HSP 1 Score: 120 bits (301), Expect = 2.460e-25
Identity = 67/133 (50.38%), Postives = 90/133 (67.67%), Query Frame = 1
Query:    1 QVMSVSIKRDRATGKNLGYGFVKLSSHQQARAAKEAMQGVELGGRRVRVGWAQKNTSLYVGGLEGGAITTEMLVREFARFGPLDKELTTIKP-GAKFGFVKYRYRLHAEAAKKELNGRPAFDGLCPGLEIEWN 396
            +V++V+IKRDR+T KNLGYGFV++ SH +A  AKE M   E+ GRR+RVGWAQKN +L V GL  G +T E +   F  FG L++E T +   G+    VKYR RLHAE A+++LNG  A  G  P L ++W+
Sbjct:   40 RVLTVNIKRDRSTSKNLGYGFVRMGSHAEACVAKERMHRAEVHGRRIRVGWAQKNAALAVSGLPDG-VTAEQVKALFRPFGALEEENTQLMTDGSGTAVVKYRNRLHAEDARRQLNGSQAL-GPAP-LRVDWS 169          
BLAST of mRNA_Ecto-sp13_S_contig13095.2529.1 vs. uniprot
Match: A0A7S3DFR0_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3DFR0_9EUKA)

HSP 1 Score: 116 bits (291), Expect = 1.750e-24
Identity = 59/136 (43.38%), Postives = 90/136 (66.18%), Query Frame = 1
Query:    1 QVMSVSIKRDRATGKNLGYGFVKLSSHQQARAAKEAMQGVELGGRRVRVGWAQKNTSLYVGGLEGGAITTEMLVREFARFGPLDKELTTIKPGAKFGFVKYRYRLHAEAAKKELNGRPAFDGLCPGLEIEWNSVES 408
            +V+++ IKRDR T  +LGYGFV+    + A  AK+ + G  +G R +R+GWAQKNT+L++G L+  ++T+E+L  EF +FGPL +E T +K G  +GFV++R R  AE AK+E+ G+  F G    + I W   +S
Sbjct:   51 EVINIDIKRDRMTSNSLGYGFVEFQRFEDALEAKKQLSGARIGERAIRLGWAQKNTNLFIGDLDA-SVTSEILFNEFKQFGPLFEEDTFVKEGMSYGFVRFRKREDAETAKREMQGKN-FHGRV--IRIGWGDAKS 182          
BLAST of mRNA_Ecto-sp13_S_contig13095.2529.1 vs. uniprot
Match: L8H825_ACACA (RNA recognition motif domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H825_ACACA)

HSP 1 Score: 114 bits (285), Expect = 6.760e-24
Identity = 59/116 (50.86%), Postives = 83/116 (71.55%), Query Frame = 1
Query:    4 VMSVSIKRDRATGKNLGYGFVKLSSHQQARAAKEAMQGVELGGRRVRVGWAQKNTSLYVGGLEGGAITTEMLVREFARFGPLDKELTTIKPGAKFGFVKYRYRLHAEAAKKELNGR 351
            V+SV IKRDR T  +LGYGFV L S + A AAK+AM    +GGR +R+GWAQKNT+L++G L+  +IT+  L   F +FGP+ +E T +K    +GFV++R+R HAE AK+E+N +
Sbjct:   88 VISVEIKRDRVTNYSLGYGFVLLKSREDAGAAKKAMHRQVVGGRAIRIGWAQKNTNLFIGDLDP-SITSAQLREVFRQFGPIYEEETFVK-NRNYGFVRFRHRKHAEMAKREMNNK 201          
BLAST of mRNA_Ecto-sp13_S_contig13095.2529.1 vs. uniprot
Match: A0A7S0TF52_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Elphidium margaritaceum TaxID=933848 RepID=A0A7S0TF52_9EUKA)

HSP 1 Score: 109 bits (273), Expect = 4.780e-23
Identity = 85/299 (28.43%), Postives = 127/299 (42.47%), Query Frame = 1
Query:    7 MSVSIKRDRATGKNLGYGFVKLSSHQQARAAKEAMQGVELGGRRVRVGWAQKNTSLYV---GGLEGGAITTEMLVREFARFGPLDKELTTIKPGAKFGFVKYRYRLHAEAAKKELNGRP-----AFDGLCPGLEIEWNSVESSAQASETAGSEKSTAEXXXXXXXXXXXKEGGTGGRTRGSSQHVGGVGGAHSRHPRGEVSGHTVHVQFEGDQGHVSAVNEVMIRKCFTKWEPVVDIVIPA---SRFNGVSPGPRQLPRCWAFVHFPPTPDGERAAANAIKDLNGTTISELRVHCTMSR 870
            + V IKRD+ T  NLGYGFVK  +   A  AK  + G+E+ GR +R+GWAQKNT+L+V   G +E   IT E L   F+ FGP+ +E T +K   K+GFVK+++RLHAE AK  L+G+       +  + P + I W    +                                                              VHVQFE +      + E   ++ F ++  V  + +P     R  G           + F+HF    +GE +AA AI +L  + I  + + C   +
Sbjct:   31 VEVDIKRDKVTKNNLGYGFVKFRNRCHAEQAKRKLNGLEIAGRAIRIGWAQKNTNLFVCLVGDVERH-ITGEHLREIFSEFGPIYEEDTFVKRN-KYGFVKFKHRLHAEKAKAALDGKHLLTKNGYKTMKP-VRIGWGDANTQRNC----------------------------------------------------------VHVQFEQNSASSVDLKEEDFKQQFQRFGVVNKVSLPRYSDKRLKG-----------YGFIHFEENDEGEESAARAITELTASPIKGVVIMCNFGK 257          
BLAST of mRNA_Ecto-sp13_S_contig13095.2529.1 vs. uniprot
Match: X6NQC1_RETFI (Uncharacterized protein (Fragment) n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6NQC1_RETFI)

HSP 1 Score: 108 bits (269), Expect = 7.740e-22
Identity = 92/321 (28.66%), Postives = 137/321 (42.68%), Query Frame = 1
Query:    4 VMSVSIKRDRATGKNLGYGFVKLSSHQQARAAKEAMQGVELGGRRVRVGWAQKNTSLYV------------GGLEG--------------GAITTEMLVREFARFGPLDKELTTIKPGAKFGFVKYRYRLHAEAAKKELNGR----PAFDGLCPG-LEIEWNSVESSAQASETAGSEKSTAEXXXXXXXXXXXKEGGTGGRTRGSSQHVGGVGGAHSRHPRGEVSGHTVHVQFEGDQ-GHVSAVNEVMIRKCFTKWEPVVDIVIPASRFNGVSPGPRQLPRCWAFVHFPPTPDGERAAANAIKDLNGTTISELRVHCTMSR 870
            V +V IKRD+ T  NLGYGFV   S ++A  AK  M G+E+GGR +R+GWAQKNT+L+V            GG+EG                I  E L   F +FGP+  + T +K    +GFVK+++R HAE AK  L+G+    P  D      + I W    +                                                 H +     V+ HT + + +  + G    + E   R+ F ++  VV + +P  RF+      R+L + + F+HF    DGE AAA AI  L+   I+ + + C   +
Sbjct:   13 VENVDIKRDKVTKNNLGYGFVTFKSREEAEKAKRNMHGMEIGGRTIRIGWAQKNTNLFVKAFLFVCLFAKGGGVEGCKLYLLRTVVGDLDSRIDAEHLKTIFKQFGPIYNDDTFVKNNG-YGFVKFKHRTHAEKAKATLDGKFLTIPGTDQQTQRPIRIGWGDANTQRNC--------------------------------------------VHVQFDSTHVTHHTGNSKKKKKKRGTQMDLKESDFREVFQRFGRVVKVSLP--RFSD-----RKL-KGYGFIHFEENDDGEEAAARAITTLSYGAINNVVMQCNFGK 280          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13095.2529.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNP3_ECTSI2.090e-17289.29Poly(A) binding protein, cytoplasmic 4-like n=1 Ta... [more]
A0A6H5L4J2_9PHAE1.100e-17188.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S0DL40_9EUKA1.910e-2930.72Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
W7TSQ6_9STRA2.030e-2831.63Tia1 cytotoxic granule-associated rna binding prot... [more]
A0A7S3Z8S4_9EUKA2.630e-2630.72Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A836CDW8_9STRA2.460e-2550.38Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3DFR0_9EUKA1.750e-2443.38Hypothetical protein n=1 Tax=Palpitomonas bilix Ta... [more]
L8H825_ACACA6.760e-2450.86RNA recognition motif domain containing protein n=... [more]
A0A7S0TF52_9EUKA4.780e-2328.43Hypothetical protein (Fragment) n=1 Tax=Elphidium ... [more]
X6NQC1_RETFI7.740e-2228.66Uncharacterized protein (Fragment) n=1 Tax=Reticul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13095contigEcto-sp13_S_contig13095:636..4745 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score510.0
Seed ortholog evalue1.1e-141
Seed eggNOG ortholog2880.D7FNP3
Model size1554
KEGG rclassRC00331,RC00418,RC02600
KEGG koko:K17989
KEGG ReactionR00220,R00590,R00996
KEGG Pathwayko00260,ko00270,ko00290,ko01100,ko01110,ko01130,ko01200,ko01230,map00260,map00270,map00290,map01100,map01110,map01130,map01200,map01230
KEGG ModuleM00570
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.RNA binding
EggNOG OGsKOG0145@1,KOG0145@2759
Ec32 ortholog descriptionRNA recognition motif domain
Ec32 orthologEc-01_004780.1
EC4.3.1.17,4.3.1.19
Cds size1311
COG Functional cat.DU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13095.2529.1prot_Ecto-sp13_S_contig13095.2529.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13095 642..4508 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462701.4210498-UTR-Ecto-sp13_S_contig13095:635..6411681462701.4210498-UTR-Ecto-sp13_S_contig13095:635..641Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13095 636..641 +
1681462701.5119731-UTR-Ecto-sp13_S_contig13095:4508..47451681462701.5119731-UTR-Ecto-sp13_S_contig13095:4508..4745Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13095 4509..4745 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462701.4357278-CDS-Ecto-sp13_S_contig13095:641..7491681462701.4357278-CDS-Ecto-sp13_S_contig13095:641..749Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13095 642..749 +
1681462701.447412-CDS-Ecto-sp13_S_contig13095:1051..12171681462701.447412-CDS-Ecto-sp13_S_contig13095:1051..1217Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13095 1052..1217 +
1681462701.4566524-CDS-Ecto-sp13_S_contig13095:1903..20111681462701.4566524-CDS-Ecto-sp13_S_contig13095:1903..2011Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13095 1904..2011 +
1681462701.467935-CDS-Ecto-sp13_S_contig13095:2604..28371681462701.467935-CDS-Ecto-sp13_S_contig13095:2604..2837Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13095 2605..2837 +
1681462701.4834044-CDS-Ecto-sp13_S_contig13095:3286..35141681462701.4834044-CDS-Ecto-sp13_S_contig13095:3286..3514Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13095 3287..3514 +
1681462701.503214-CDS-Ecto-sp13_S_contig13095:4040..45081681462701.503214-CDS-Ecto-sp13_S_contig13095:4040..4508Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13095 4041..4508 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13095.2529.1

>prot_Ecto-sp13_S_contig13095.2529.1 ID=prot_Ecto-sp13_S_contig13095.2529.1|Name=mRNA_Ecto-sp13_S_contig13095.2529.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=437bp
MSVSIKRDRATGKNLGYGFVKLSSHQQARAAKEAMQGVELGGRRVRVGWA
QKNTSLYVGGLEGGAITTEMLVREFARFGPLDKELTTIKPGAKFGFVKYR
YRLHAEAAKKELNGRPAFDGLCPGLEIEWNSVESSAQASETAGSEKSTAE
ERTTGGGGGGGKEGGTGGRTRGSSQHVGGVGGAHSRHPRGEVSGHTVHVQ
FEGDQGHVSAVNEVMIRKCFTKWEPVVDIVIPASRFNGVSPGPRQLPRCW
AFVHFPPTPDGERAAANAIKDLNGTTISELRVHCTMSRGGGTRTGSPWRK
QGGGGGGGNRSRRHSTGGGGAMSHAGGGQGFGGRPSRSSLDGPGAPQGRS
GGWGGHVRAYFCIPHPACVCSSQLLFFSVVSCCVQTQPESVCVHRPVFCD
CFLLHECLVLLPVSPVMSRGVDEGEAEHVVTWCFSW*
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mRNA from alignment at Ecto-sp13_S_contig13095:636..4745+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13095.2529.1 ID=mRNA_Ecto-sp13_S_contig13095.2529.1|Name=mRNA_Ecto-sp13_S_contig13095.2529.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4110bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13095:636..4745+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGATGTCGGTGTCGATCAAGCGCGATCGAGCCACCGGCAAAAACCT GGGGTACGGCTTCGTCAAGCTGTCCTCGCACCAGCAGGCGAGAGCTGCCA AAGAGGCCATGCAGGTATGGTCTGTGGGTGACGTGTGTTTCGTCGAGGGC CTTGTTGCTGAGGAAAAGAAAACCGGCCTGGTACGCTTTCAGAAATGGAT GAAAAATCGAGTTTTTTGTCGGTCAGAGGCAGGAGCTGGCAGGCTCCTGA CCACCCGGATAGATCTCCTGTCATCCGTGCTTGTCTGTGCACGGCATCAT GTCTCTCCCGCCAGCTGCTTTCCTTCTGGTGAAACGCTGCTCACCAGCCC CACCCTTGTGTTCCCGCATTGGCGCTATTAAAAACGGCATGGTGCTTGCT TGCTGCGTGCACGAAGGGCGTCGAACTGGGCGGACGGCGCGTGCGAGTTG GCTGGGCGCAGAAGAACACGTCCCTGTACGTCGGCGGACTGGAGGGCGGC GCGATCACCACGGAGATGCTTGTCCGCGAGTTCGCCCGTTTCGGTCCCCT CGACAAGGAGCTCACCACTATCAAACCCGGGGGTGAGAAGACCCCCCACC CTGCACGGCCATGAGTACCCCTCCACCCTCACCCCCACCCCCACCCCTCT CCTTCATCTGGAATTTTTCCACCTGAAATGTTCGAGCATCATATACTCCA AGTGTATCACATCTTCTTCACGGTGTGTGGCGCGACTTTTGTACACTGCC GCAAAGATCGAAGTCTCCTTGCGGTAGTCGCGTGCCTGCCGAGTGTGGAA CGTTTCGTTAGCCCGGATCCCCAATGAAACCCATGGCATGTCTGGTTTGG CACAGCAAATGCAAGGATGACGACGACCAGCCTGTAGTTCATCCTTATGA AGCGTAGCCTAGGTCGGCGAAATCCGGCAAAACGTATCGCTCCGTCCCGG CATAGTAGGGATACGAGGCCAATAGTCTCACGGCTACGGCATGCCTTTAC ATGAAGACACCCCCCTCCCCCCAGCTCCTGCGAAATATGGTACGGGATAA CCCCAAAGAGCGCCAGAACTGAGTTGGTATGTTAGAATCATGAGTTGGTA TGTAAGAAGTATTACTGCTGATCGTTGTCCTTGAAATGGACACACAGTGT AGTGCCGAGGACGATTGGTTCAACGTAAGCCTCCAAACCTCTCGTTCTTT TTTTTTGTGTCGATTTATTCTTAGCTCTACTTCTCCCTCCCTCGGCTTGT CTCTCTCGACCACCCCAGCGAAGTTCGGGTTCGTGAAGTACCGCTACCGC CTCCACGCCGAGGCGGCGAAGAAGGAGCTCAACGGGCGCCCGGCCTTTGA TGGCCTCTGCCCCGGTCTTGAGATCGGTGAGGTTAAGAGAAGATGGAGTA CCGGTTACCCAGGGCATAGGGGGTGGGGCACCAGACAAACGTGCGTTGAC GACAGCGTAGATGGTCCTGGTTCTAGTCGATACATGCTTGAACGTCGTTT CAGGGCCGAAGGGACCATCGGTCTGGCCTAGGTATGGCCGACTGACTGAC TAACCAACGAGCGGTGTTATTTTCCATGCCACGTATCATCAGGCAGTGAT GTACAGAGGGCATTCTGTGAAAGGGTCCACACACTCGATACAAGAAGTAT TGAATTGTCTGCGATTTGGTTGCCATCGATATCCGAACATCGTTCGCCCT TCTCTGCTGCTTCTGTATTTGCTTCGCCCTGTTCAGCACTTAACCACGCA CTTCTAAGCGTCCCTCTCTTCCGTCTCTCTGAATGCACTGGGGTGATTCT CCTGACCGTACCCAAGAATCGAAGAATAGGTTTGCGCAATTTCCGAGTCG ATACACCGCCCTTTCGGGTGGGCCGCGTGCCACTTGTTAACTACCTGCCT TCTTTGTGCTTCTTTTCTACCGCACGGCTCACTGAATCACTGCAAAACGC CTTCTTTCGTTCTTTGCAGAGTGGAACAGCGTCGAGTCCAGCGCTCAGGC CTCCGAGACGGCCGGATCGGAAAAGAGCACCGCAGAAGAACGGACCACCG GCGGCGGCGGCGGCGGCGGCAAAGAGGGAGGGACAGGAGGGCGAACAAGG GGGTCGTCGCAGCACGTCGGGGGTGTGGGGGGGGCACACTCCCGTCACCC CCGCGGGGAGGTCTCTGGCCACACCGTCCACGTGCAGTTCGAGGGCGACC AGGTGATGACCTCAAATCAACCCATTTACGAACCGACACATGTTGATGGG TGTGTCCGTTTTTTTGCTTCCTTTTTTATTATTTTGGCCTTTTTCTTTTA TCTGTCCGGTGCATGGCTGCGACAACCAACCGGTCCACACACTCTCTCGT GTCGGAGGCTCTTTCATCGCCTTCGGCGTGCTTGTTGGCGCCGGTGAAGT TGTAGATGACGGACAGGGCGCGTGCGTACGTAGTGCCGTCCGTTTTCCCT CTTGCTCGTCTTGTTTACCGCGCGTGCGAAGCTGCGTACGAAACGCGATT GTATTGTGCCGCTCGCACGCTTTTCGCAACCGCCTCTACAGCTCACGACC CCTCCCCTCCCCCCCCCCTCCCCGTCGAGGACCCGTGATCAATGGTCTGA CCGCTAAGGCATGCAAAACATCCCCCGCCTGATGCCAATTCCACTCTGCA GGGCCACGTGTCCGCCGTCAACGAGGTGATGATCAGAAAGTGCTTCACCA AGTGGGAGCCCGTGGTGGACATCGTCATCCCCGCGAGCCGCTTCAACGGC GTGTCCCCCGGCCCACGGCAGCTCCCGAGATGTTGGGCCTTCGTCCACTT CCCGCCTACTCCGGACGGGGAGCGCGCGGCGGCGAATGCCATCAAGGACC TCAACGGCACCACCATCTCGGAGCTCAGGGTGAGCAGCGACCGTTGCCGC TGCTGCTGCTGCTGCTGCTGCTGCTGCCTGTTTGTTTCCGCACGCGCAGC AGAGATACTCTGCTGCTGCCTTTGCTTGTGATGGTATTCTATGTGTGGCT TCAATGGGGGGAGGGGACGGGGGAGGGGGTTACGGTTTTTCTGGTCTTGA CGGCGCTGCACCGCTTCTTGTGCCTTTTTGTTGTTTCGGACGGCGGTTTT GACGACCCCAACACACCTGCGGAAGTGCTGCTGCTGCTGCTGCTGCTGCT GCTGCTGCTATGCAGTATTCTGTATACGAGCAGAAAAATATTCTGGGGGA CCCTGCCTTCTTGTATTTAGCAGGGCCGCGGCTACCGGTGATGGCACAGA TGAATGATGGATGCGTCGGAGTCCTTCGAGAACCCATCCCCTTGCTCTCT CTCGCTATCTCTCTCTCTCTCTCCCTCGCCCTCTCCCTCTCTCTCTCTCC CCCTCTCTTAACGCTGCGACCCCTAAACCCGAACCGAACCGATGTGTAAT GACAGGTGCACTGCACCATGAGCCGCGGTGGCGGCACCCGTACCGGTAGC CCCTGGCGCAAGCAGGGCGGCGGCGGCGGTGGCGGCAACAGATCGAGGAG GCACAGCACCGGTGGAGGCGGTGCCATGAGCCACGCTGGCGGCGGACAAG GCTTCGGCGGTAGGCCGTCGAGGTCTTCCCTCGACGGCCCAGGGGCACCG CAAGGGCGGAGCGGCGGATGGGGCGGACACGTGCGTGCTTACTTCTGCAT ACCCCATCCAGCGTGTGTGTGTTCATCGCAGCTTCTTTTTTTCTCGGTCG TCTCTTGCTGCGTACAAACTCAACCAGAGAGTGTGTGTGTTCATCGACCT GTTTTTTGCGATTGTTTCTTGCTGCACGAGTGTTTGGTCTTGTTGCCAGT GTCGCCGGTAATGTCTCGAGGAGTCGACGAGGGAGAAGCCGAGCATGTTG TTACCTGGTGTTTTAGCTGGTAGAGGTGGCAAGTCACGAGGTTCCATCCA CGACACGGTCATTTTTCAGACAGCTACTTTCTGGCAGCCGTTTGCGGGGC AAGCTATGATGGGTTTTACCACTTGCCCCGCACCGTCCTCCTCCCCCTCT ACCCACGTTCTCTTGACCGGCGGCACTTCTCTCTCTTTTTTCCCCAATGC CCTCTTACACCACCATCTCTTTGCATCTGTCCGCTGTCTGTTTTGCCCTC GGTGCTTCCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13095:636..4745+

>mRNA_Ecto-sp13_S_contig13095.2529.1 ID=mRNA_Ecto-sp13_S_contig13095.2529.1|Name=mRNA_Ecto-sp13_S_contig13095.2529.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1311bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13095:636..4745+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGGTGTCGATCAAGCGCGATCGAGCCACCGGCAAAAACCTGGGGTA
CGGCTTCGTCAAGCTGTCCTCGCACCAGCAGGCGAGAGCTGCCAAAGAGG
CCATGCAGGGCGTCGAACTGGGCGGACGGCGCGTGCGAGTTGGCTGGGCG
CAGAAGAACACGTCCCTGTACGTCGGCGGACTGGAGGGCGGCGCGATCAC
CACGGAGATGCTTGTCCGCGAGTTCGCCCGTTTCGGTCCCCTCGACAAGG
AGCTCACCACTATCAAACCCGGGGCGAAGTTCGGGTTCGTGAAGTACCGC
TACCGCCTCCACGCCGAGGCGGCGAAGAAGGAGCTCAACGGGCGCCCGGC
CTTTGATGGCCTCTGCCCCGGTCTTGAGATCGAGTGGAACAGCGTCGAGT
CCAGCGCTCAGGCCTCCGAGACGGCCGGATCGGAAAAGAGCACCGCAGAA
GAACGGACCACCGGCGGCGGCGGCGGCGGCGGCAAAGAGGGAGGGACAGG
AGGGCGAACAAGGGGGTCGTCGCAGCACGTCGGGGGTGTGGGGGGGGCAC
ACTCCCGTCACCCCCGCGGGGAGGTCTCTGGCCACACCGTCCACGTGCAG
TTCGAGGGCGACCAGGGCCACGTGTCCGCCGTCAACGAGGTGATGATCAG
AAAGTGCTTCACCAAGTGGGAGCCCGTGGTGGACATCGTCATCCCCGCGA
GCCGCTTCAACGGCGTGTCCCCCGGCCCACGGCAGCTCCCGAGATGTTGG
GCCTTCGTCCACTTCCCGCCTACTCCGGACGGGGAGCGCGCGGCGGCGAA
TGCCATCAAGGACCTCAACGGCACCACCATCTCGGAGCTCAGGGTGCACT
GCACCATGAGCCGCGGTGGCGGCACCCGTACCGGTAGCCCCTGGCGCAAG
CAGGGCGGCGGCGGCGGTGGCGGCAACAGATCGAGGAGGCACAGCACCGG
TGGAGGCGGTGCCATGAGCCACGCTGGCGGCGGACAAGGCTTCGGCGGTA
GGCCGTCGAGGTCTTCCCTCGACGGCCCAGGGGCACCGCAAGGGCGGAGC
GGCGGATGGGGCGGACACGTGCGTGCTTACTTCTGCATACCCCATCCAGC
GTGTGTGTGTTCATCGCAGCTTCTTTTTTTCTCGGTCGTCTCTTGCTGCG
TACAAACTCAACCAGAGAGTGTGTGTGTTCATCGACCTGTTTTTTGCGAT
TGTTTCTTGCTGCACGAGTGTTTGGTCTTGTTGCCAGTGTCGCCGGTAAT
GTCTCGAGGAGTCGACGAGGGAGAAGCCGAGCATGTTGTTACCTGGTGTT
TTAGCTGGTAG
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