prot_Ecto-sp13_S_contig13093.2528.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig13093.2528.1
Unique Nameprot_Ecto-sp13_S_contig13093.2528.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length81
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13093.2528.1 vs. uniprot
Match: A0A6H5KN34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN34_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 1.210e-49
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0 
Query:    1 MSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDPRDADEAVRARDGYDFDGYRLRVEMSRGKREF 81
            MSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDPRDADEAVRARDGYDFDGYRLRVEMSRGKREF
Sbjct:   61 MSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDPRDADEAVRARDGYDFDGYRLRVEMSRGKREF 141
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BLAST of mRNA_Ecto-sp13_S_contig13093.2528.1 vs. uniprot
Match: D8LPT5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPT5_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 4.410e-49
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 0 
Query:    1 MSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDPRDADEAVRARDGYDFDGYRLRVEMSRGKREF 81
            MSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFED RDADEAVRARDGYDFDGYRLRVEMSRGKREF
Sbjct:   53 MSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDSRDADEAVRARDGYDFDGYRLRVEMSRGKREF 133
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BLAST of mRNA_Ecto-sp13_S_contig13093.2528.1 vs. uniprot
Match: D8LB97_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB97_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 5.340e-35
Identity = 57/80 (71.25%), Postives = 72/80 (90.00%), Query Frame = 0 
Query:    1 MSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDPRDADEAVRARDGYDFDGYRLRVEMSRGKRE 80
            M+R+YIGNLPMD+ EKD++D+FYK+G+I D+ LK P RPPAFGF+TF+D RDA+EAVRARDGYD DG RLRVE+SRG+R+
Sbjct:    1 MARIYIGNLPMDVTEKDMDDVFYKFGRIVDIDLKTPARPPAFGFITFQDARDAEEAVRARDGYDMDGSRLRVEISRGRRD 80
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BLAST of mRNA_Ecto-sp13_S_contig13093.2528.1 vs. uniprot
Match: A0A453FB95_AEGTS (RRM domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453FB95_AEGTS)

HSP 1 Score: 117 bits (293), Expect = 6.060e-32
Identity = 49/76 (64.47%), Postives = 65/76 (85.53%), Query Frame = 0 
Query:    4 LYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDPRDADEAVRARDGYDFDGYRLRVEMSRGKR 79
            +Y+GNLP D++E+++ED+FYKYG+I D+ LK+P RPP + FV FEDPRDAD+A+  RDGYDFDGYRLRVE++ G R
Sbjct:    9 IYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRDGYDFDGYRLRVELAHGGR 84
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BLAST of mRNA_Ecto-sp13_S_contig13093.2528.1 vs. uniprot
Match: A0A453FBA3_AEGTS (RRM domain-containing protein n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453FBA3_AEGTS)

HSP 1 Score: 117 bits (293), Expect = 7.190e-32
Identity = 49/76 (64.47%), Postives = 65/76 (85.53%), Query Frame = 0 
Query:    4 LYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDPRDADEAVRARDGYDFDGYRLRVEMSRGKR 79
            +Y+GNLP D++E+++ED+FYKYG+I D+ LK+P RPP + FV FEDPRDAD+A+  RDGYDFDGYRLRVE++ G R
Sbjct:    9 IYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRDGYDFDGYRLRVELAHGGR 84
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BLAST of mRNA_Ecto-sp13_S_contig13093.2528.1 vs. uniprot
Match: A0A453FB43_AEGTS (RRM domain-containing protein n=3 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453FB43_AEGTS)

HSP 1 Score: 117 bits (293), Expect = 1.360e-31
Identity = 49/76 (64.47%), Postives = 65/76 (85.53%), Query Frame = 0 
Query:    4 LYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDPRDADEAVRARDGYDFDGYRLRVEMSRGKR 79
            +Y+GNLP D++E+++ED+FYKYG+I D+ LK+P RPP + FV FEDPRDAD+A+  RDGYDFDGYRLRVE++ G R
Sbjct:    9 IYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRDGYDFDGYRLRVELAHGGR 84
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13093.2528.1 vs. uniprot
Match: A0A453FB76_AEGTS (RRM domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453FB76_AEGTS)

HSP 1 Score: 117 bits (293), Expect = 1.400e-31
Identity = 49/76 (64.47%), Postives = 65/76 (85.53%), Query Frame = 0 
Query:    4 LYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDPRDADEAVRARDGYDFDGYRLRVEMSRGKR 79
            +Y+GNLP D++E+++ED+FYKYG+I D+ LK+P RPP + FV FEDPRDAD+A+  RDGYDFDGYRLRVE++ G R
Sbjct:   32 IYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRDGYDFDGYRLRVELAHGGR 107
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BLAST of mRNA_Ecto-sp13_S_contig13093.2528.1 vs. uniprot
Match: A0A7S2B3I3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B3I3_9STRA)

HSP 1 Score: 115 bits (289), Expect = 1.420e-31
Identity = 49/77 (63.64%), Postives = 66/77 (85.71%), Query Frame = 0 
Query:    3 RLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDPRDADEAVRARDGYDFDGYRLRVEMSRGKR 79
            R+++GNLPMD++E+D+ED+FYKYG+++D+ LK P RPPAF F+TF+D RDAD+AVR RDGY   G RLRVE+ RG+R
Sbjct:    8 RIFVGNLPMDIRERDIEDLFYKYGRMSDIHLKTPSRPPAFAFITFDDRRDADDAVRGRDGYSLGGERLRVEIVRGRR 84
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BLAST of mRNA_Ecto-sp13_S_contig13093.2528.1 vs. uniprot
Match: A0A453FBA8_AEGTS (Uncharacterized protein n=5 Tax=Triticinae TaxID=1648030 RepID=A0A453FBA8_AEGTS)

HSP 1 Score: 117 bits (293), Expect = 1.440e-31
Identity = 49/76 (64.47%), Postives = 65/76 (85.53%), Query Frame = 0 
Query:    4 LYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDPRDADEAVRARDGYDFDGYRLRVEMSRGKR 79
            +Y+GNLP D++E+++ED+FYKYG+I D+ LK+P RPP + FV FEDPRDAD+A+  RDGYDFDGYRLRVE++ G R
Sbjct:    9 IYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRDGYDFDGYRLRVELAHGGR 84
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13093.2528.1 vs. uniprot
Match: A0A453FB90_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453FB90_AEGTS)

HSP 1 Score: 117 bits (293), Expect = 1.480e-31
Identity = 49/76 (64.47%), Postives = 65/76 (85.53%), Query Frame = 0 
Query:    4 LYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDPRDADEAVRARDGYDFDGYRLRVEMSRGKR 79
            +Y+GNLP D++E+++ED+FYKYG+I D+ LK+P RPP + FV FEDPRDAD+A+  RDGYDFDGYRLRVE++ G R
Sbjct:    9 IYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRDGYDFDGYRLRVELAHGGR 84
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13093.2528.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KN34_9PHAE1.210e-49100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LPT5_ECTSI4.410e-4998.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LB97_ECTSI5.340e-3571.25Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A453FB95_AEGTS6.060e-3264.47RRM domain-containing protein n=1 Tax=Aegilops tau... [more]
A0A453FBA3_AEGTS7.190e-3264.47RRM domain-containing protein n=2 Tax=Aegilops tau... [more]
A0A453FB43_AEGTS1.360e-3164.47RRM domain-containing protein n=3 Tax=Aegilops tau... [more]
A0A453FB76_AEGTS1.400e-3164.47RRM domain-containing protein n=1 Tax=Aegilops tau... [more]
A0A7S2B3I3_9STRA1.420e-3163.64Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A453FBA8_AEGTS1.440e-3164.47Uncharacterized protein n=5 Tax=Triticinae TaxID=1... [more]
A0A453FB90_AEGTS1.480e-3164.47Uncharacterized protein n=1 Tax=Aegilops tauschii ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 3..73
e-value: 5.1E-22
score: 89.1
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 4..71
e-value: 2.1E-19
score: 69.1
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 2..77
score: 18.24
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..80
e-value: 5.6E-26
score: 92.7
NoneNo IPR availablePANTHERPTHR23147SERINE/ARGININE RICH SPLICING FACTORcoord: 4..79
NoneNo IPR availablePANTHERPTHR23147:SF140coord: 4..79
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 3..79

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13093contigEcto-sp13_S_contig13093:4239..4825 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13093.2528.1mRNA_Ecto-sp13_S_contig13093.2528.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig13093 4233..4825 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig13093.2528.1 ID=prot_Ecto-sp13_S_contig13093.2528.1|Name=mRNA_Ecto-sp13_S_contig13093.2528.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=81bp
MSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDP
RDADEAVRARDGYDFDGYRLRVEMSRGKREF
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf