mRNA_Ecto-sp13_S_contig13093.2528.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13093.2528.1
Unique NamemRNA_Ecto-sp13_S_contig13093.2528.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13093.2528.1 vs. uniprot
Match: D8LPT5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPT5_ECTSI)

HSP 1 Score: 169 bits (429), Expect = 1.500e-50
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 1 
Query:    1 RTMSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDPRDADEAVRARDGYDFDGYRLRVEMSRGKREF 249
            RTMSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFED RDADEAVRARDGYDFDGYRLRVEMSRGKREF
Sbjct:   51 RTMSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDSRDADEAVRARDGYDFDGYRLRVEMSRGKREF 133
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BLAST of mRNA_Ecto-sp13_S_contig13093.2528.1 vs. uniprot
Match: A0A6H5KN34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN34_9PHAE)

HSP 1 Score: 171 bits (432), Expect = 2.360e-50
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1 
Query:    4 TMSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDPRDADEAVRARDGYDFDGYRLRVEMSRGKREF 249
            TMSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDPRDADEAVRARDGYDFDGYRLRVEMSRGKREF
Sbjct:   60 TMSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDPRDADEAVRARDGYDFDGYRLRVEMSRGKREF 141
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BLAST of mRNA_Ecto-sp13_S_contig13093.2528.1 vs. uniprot
Match: D8LB97_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB97_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 5.790e-35
Identity = 57/80 (71.25%), Postives = 72/80 (90.00%), Query Frame = 1 
Query:    7 MSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDPRDADEAVRARDGYDFDGYRLRVEMSRGKRE 246
            M+R+YIGNLPMD+ EKD++D+FYK+G+I D+ LK P RPPAFGF+TF+D RDA+EAVRARDGYD DG RLRVE+SRG+R+
Sbjct:    1 MARIYIGNLPMDVTEKDMDDVFYKFGRIVDIDLKTPARPPAFGFITFQDARDAEEAVRARDGYDMDGSRLRVEISRGRRD 80
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BLAST of mRNA_Ecto-sp13_S_contig13093.2528.1 vs. uniprot
Match: A0A453FB95_AEGTS (RRM domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453FB95_AEGTS)

HSP 1 Score: 118 bits (295), Expect = 3.270e-32
Identity = 50/81 (61.73%), Postives = 66/81 (81.48%), Query Frame = 1 
Query:    1 RTMSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDPRDADEAVRARDGYDFDGYRLRVEMSRGKR 243
            R    +Y+GNLP D++E+++ED+FYKYG+I D+ LK+P RPP + FV FEDPRDAD+A+  RDGYDFDGYRLRVE++ G R
Sbjct:    4 RNSCTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRDGYDFDGYRLRVELAHGGR 84
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BLAST of mRNA_Ecto-sp13_S_contig13093.2528.1 vs. uniprot
Match: A0A453FBA3_AEGTS (RRM domain-containing protein n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453FBA3_AEGTS)

HSP 1 Score: 118 bits (295), Expect = 3.880e-32
Identity = 50/81 (61.73%), Postives = 66/81 (81.48%), Query Frame = 1 
Query:    1 RTMSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDPRDADEAVRARDGYDFDGYRLRVEMSRGKR 243
            R    +Y+GNLP D++E+++ED+FYKYG+I D+ LK+P RPP + FV FEDPRDAD+A+  RDGYDFDGYRLRVE++ G R
Sbjct:    4 RNSCTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRDGYDFDGYRLRVELAHGGR 84
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BLAST of mRNA_Ecto-sp13_S_contig13093.2528.1 vs. uniprot
Match: A0A453FB43_AEGTS (RRM domain-containing protein n=3 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453FB43_AEGTS)

HSP 1 Score: 118 bits (295), Expect = 7.360e-32
Identity = 50/81 (61.73%), Postives = 66/81 (81.48%), Query Frame = 1 
Query:    1 RTMSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDPRDADEAVRARDGYDFDGYRLRVEMSRGKR 243
            R    +Y+GNLP D++E+++ED+FYKYG+I D+ LK+P RPP + FV FEDPRDAD+A+  RDGYDFDGYRLRVE++ G R
Sbjct:    4 RNSCTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRDGYDFDGYRLRVELAHGGR 84
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BLAST of mRNA_Ecto-sp13_S_contig13093.2528.1 vs. uniprot
Match: A0A453FB76_AEGTS (RRM domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453FB76_AEGTS)

HSP 1 Score: 118 bits (295), Expect = 7.560e-32
Identity = 50/81 (61.73%), Postives = 66/81 (81.48%), Query Frame = 1 
Query:    1 RTMSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDPRDADEAVRARDGYDFDGYRLRVEMSRGKR 243
            R    +Y+GNLP D++E+++ED+FYKYG+I D+ LK+P RPP + FV FEDPRDAD+A+  RDGYDFDGYRLRVE++ G R
Sbjct:   27 RNSCTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRDGYDFDGYRLRVELAHGGR 107
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BLAST of mRNA_Ecto-sp13_S_contig13093.2528.1 vs. uniprot
Match: A0A453FBA8_AEGTS (Uncharacterized protein n=5 Tax=Triticinae TaxID=1648030 RepID=A0A453FBA8_AEGTS)

HSP 1 Score: 118 bits (295), Expect = 7.770e-32
Identity = 50/81 (61.73%), Postives = 66/81 (81.48%), Query Frame = 1 
Query:    1 RTMSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDPRDADEAVRARDGYDFDGYRLRVEMSRGKR 243
            R    +Y+GNLP D++E+++ED+FYKYG+I D+ LK+P RPP + FV FEDPRDAD+A+  RDGYDFDGYRLRVE++ G R
Sbjct:    4 RNSCTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRDGYDFDGYRLRVELAHGGR 84
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13093.2528.1 vs. uniprot
Match: A0A453FB90_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453FB90_AEGTS)

HSP 1 Score: 118 bits (295), Expect = 7.990e-32
Identity = 50/81 (61.73%), Postives = 66/81 (81.48%), Query Frame = 1 
Query:    1 RTMSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDPRDADEAVRARDGYDFDGYRLRVEMSRGKR 243
            R    +Y+GNLP D++E+++ED+FYKYG+I D+ LK+P RPP + FV FEDPRDAD+A+  RDGYDFDGYRLRVE++ G R
Sbjct:    4 RNSCTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRDGYDFDGYRLRVELAHGGR 84
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13093.2528.1 vs. uniprot
Match: A0A453FB92_AEGTS (RRM domain-containing protein n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453FB92_AEGTS)

HSP 1 Score: 118 bits (295), Expect = 8.210e-32
Identity = 50/81 (61.73%), Postives = 66/81 (81.48%), Query Frame = 1 
Query:    1 RTMSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDPRDADEAVRARDGYDFDGYRLRVEMSRGKR 243
            R    +Y+GNLP D++E+++ED+FYKYG+I D+ LK+P RPP + FV FEDPRDAD+A+  RDGYDFDGYRLRVE++ G R
Sbjct:   47 RNSCTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRDGYDFDGYRLRVELAHGGR 127
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13093.2528.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPT5_ECTSI1.500e-5098.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KN34_9PHAE2.360e-50100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LB97_ECTSI5.790e-3571.25Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A453FB95_AEGTS3.270e-3261.73RRM domain-containing protein n=1 Tax=Aegilops tau... [more]
A0A453FBA3_AEGTS3.880e-3261.73RRM domain-containing protein n=2 Tax=Aegilops tau... [more]
A0A453FB43_AEGTS7.360e-3261.73RRM domain-containing protein n=3 Tax=Aegilops tau... [more]
A0A453FB76_AEGTS7.560e-3261.73RRM domain-containing protein n=1 Tax=Aegilops tau... [more]
A0A453FBA8_AEGTS7.770e-3261.73Uncharacterized protein n=5 Tax=Triticinae TaxID=1... [more]
A0A453FB90_AEGTS7.990e-3261.73Uncharacterized protein n=1 Tax=Aegilops tauschii ... [more]
A0A453FB92_AEGTS8.210e-3261.73RRM domain-containing protein n=2 Tax=Aegilops tau... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13093contigEcto-sp13_S_contig13093:4233..4825 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score167.9
Seed ortholog evalue1.9e-39
Seed eggNOG ortholog2880.D8LPT5
Preferred nameSR30
Model size249
KEGG koko:K12890
KEGG Pathwayko03040,ko04657,ko05168,map03040,map04657,map05168
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016604,GO:0016607,GO:0031974,GO:0031981,GO:0034641,GO:0035061,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363
Exons2
EggNOG free text desc.RNA splicing
EggNOG OGsCOG0724@1,KOG0105@2759
Cds size243
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03041
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462701.3516457-UTR-Ecto-sp13_S_contig13093:4232..42381681462701.3516457-UTR-Ecto-sp13_S_contig13093:4232..4238Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13093 4233..4238 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462701.3650515-CDS-Ecto-sp13_S_contig13093:4238..44171681462701.3650515-CDS-Ecto-sp13_S_contig13093:4238..4417Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13093 4239..4417 +
1681462701.3750172-CDS-Ecto-sp13_S_contig13093:4761..48251681462701.3750172-CDS-Ecto-sp13_S_contig13093:4761..4825Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13093 4762..4825 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13093.2528.1prot_Ecto-sp13_S_contig13093.2528.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13093 4239..4825 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13093.2528.1

>prot_Ecto-sp13_S_contig13093.2528.1 ID=prot_Ecto-sp13_S_contig13093.2528.1|Name=mRNA_Ecto-sp13_S_contig13093.2528.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=81bp
MSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDP
RDADEAVRARDGYDFDGYRLRVEMSRGKREF
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mRNA from alignment at Ecto-sp13_S_contig13093:4233..4825+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13093.2528.1 ID=mRNA_Ecto-sp13_S_contig13093.2528.1|Name=mRNA_Ecto-sp13_S_contig13093.2528.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=593bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13093:4233..4825+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCACCATGTCTCGGCTATACATCGGCAACCTGCCTATGGACATGAAGGA
GAAAGACCTGGAAGACATCTTCTACAAGTACGGCAAGATCACCGACATGC
AGCTCAAGATGCCCGAGCGCCCGCCGGCTTTCGGGTTTGTGACGTTCGAG
GACCCTAGGGACGCCGACGAGGCAGTCAGAGCCAGGTAAGAGCAGGGAAG
ATGGTGGAACACGGGGGGAAATCTGTTTTGCCTCTTTCTGTCGCTCTGCC
TCTTGTCTCTCTGCTCTCTCTTTGTCATTGTTAGTTCTACGCCAGGTATG
TACAAGCGGCAATCTGTTGCCCCACCCAACTCCCTCGCTCTTTTGTTTTC
GAGCACGTACGTCTCTCGAGAACAATCGGAGCATCGCGTCGTCTTTTCGC
CAAGCTTTGCGATTTCAAGAAGAGACAACGAACGATGTTCCTCTCTTTCC
CGACATAAAGCCGCAGTGCCGTTTACCCGATCTGGTTTTCACGAGCCACC
ACCACACACCCCCATTTCGGTTGCGGCAGGGACGGCTACGACTTCGACGG
CTACCGGCTTCGCGTCGAGATGTCCCGCGGGAAGCGCGAGTTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13093:4233..4825+

>mRNA_Ecto-sp13_S_contig13093.2528.1 ID=mRNA_Ecto-sp13_S_contig13093.2528.1|Name=mRNA_Ecto-sp13_S_contig13093.2528.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=243bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13093:4233..4825+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTCGGCTATACATCGGCAACCTGCCTATGGACATGAAGGAGAAAGA
CCTGGAAGACATCTTCTACAAGTACGGCAAGATCACCGACATGCAGCTCA
AGATGCCCGAGCGCCCGCCGGCTTTCGGGTTTGTGACGTTCGAGGACCCT
AGGGACGCCGACGAGGCAGTCAGAGCCAGGGACGGCTACGACTTCGACGG
CTACCGGCTTCGCGTCGAGATGTCCCGCGGGAAGCGCGAGTTC
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