mRNA_Ecto-sp13_S_contig13091.2526.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig13091.2526.1 vs. uniprot
Match: A0A6H5K0Z5_9PHAE (PDZ domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0Z5_9PHAE) HSP 1 Score: 347 bits (891), Expect = 3.800e-114 Identity = 209/225 (92.89%), Postives = 212/225 (94.22%), Query Frame = 1
Query: 1 MDRSRMSTNAFERVSRVASRPEDAESIAVSLGATELDIELVDNEVRRALAAIHGTKKETYAGRTNETAAGVSYLKKQLERLMKEKAQFKEKKLALQQLQQELPKRAAKYAERPEAAAXXXXXXXXXXXXXXXXXXXXATGGFLSSLKNMIISPTPAEPSPTATVPTPEEDRKAVADTTLVWKETVTSGTYDAPKKTAALYAEDGVLWGTVSEEVRDTPEQIYAYF 675
MDRSRMSTNAFERVSRVAS +DAESIAVSLGAT+LDIELVDNEVRRALAAIHGTKKETYAGRTNETAAGVSYLKKQLERLMKEKAQFKEKKLALQQLQQELPKRAAKYAER EA AXXXXXXXXXXXXXX ATGGFLSSLKNMIISP PAEPSP ATVPTPEEDR+AVADTTLVWKETVTSGTYDAPKKTAALYAED VLWGTVSEEVRDTPEQIYAYF
Sbjct: 1 MDRSRMSTNAFERVSRVASGAKDAESIAVSLGATDLDIELVDNEVRRALAAIHGTKKETYAGRTNETAAGVSYLKKQLERLMKEKAQFKEKKLALQQLQQELPKRAAKYAERREAPAXXXXXXXXXXXXXXPA----ATGGFLSSLKNMIISPAPAEPSPAATVPTPEEDRQAVADTTLVWKETVTSGTYDAPKKTAALYAEDAVLWGTVSEEVRDTPEQIYAYF 221
BLAST of mRNA_Ecto-sp13_S_contig13091.2526.1 vs. uniprot
Match: D7FUF8_ECTSI (Similar to Uncharacterized protein conserved in bacteria with a cystatin-like fold n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUF8_ECTSI) HSP 1 Score: 202 bits (514), Expect = 3.390e-58 Identity = 126/225 (56.00%), Postives = 145/225 (64.44%), Query Frame = 1
Query: 1 MDRSRMSTNAFERVSRVASRPEDAESIAVSLGATELDIELVDNEVRRALAAIHGTKKETYAGRTNETAAGVSYLKKQLERLMKEKAQFKEKKLALQQLQQELPKRAAKYAERPEAAAXXXXXXXXXXXXXXXXXXXXATGGFLSSLKNMIISPTPAEPSPTATVPTPEEDRKAVADTTLVWKETVTSGTYDAPKKTAALYAEDGVLWGTVSEEVRDTPEQIYAYF 675
M+R RM T +RVSR+AS DA SI+VSLG + DI+LVD +VR+ LAA+ GT K+TYAG +NET G ++L+KQL+ LMKEKAQ+KEK+LAL QLQ ELP G S+ PA SP T ED+KAVADTTLVWKETVTSGTYDAPKKTAALYAEDGVLWGTVSEEVRDTPEQIYAYF
Sbjct: 1 MERGRMDTTTLDRVSRLASNVGDAASISVSLGQIDWDIKLVDQDVRKLLAAVQGTSKQTYAGTSNETEQGRAFLQKQLDGLMKEKAQYKEKRLALLQLQDELP--------------------------------GIPEDGEYSA---------PAGKSP-GVATTEAEDQKAVADTTLVWKETVTSGTYDAPKKTAALYAEDGVLWGTVSEEVRDTPEQIYAYF 183
BLAST of mRNA_Ecto-sp13_S_contig13091.2526.1 vs. uniprot
Match: D7FN21_ECTSI (Similar to Uncharacterized protein conserved in bacteria with a cystatin-like fold n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN21_ECTSI) HSP 1 Score: 199 bits (506), Expect = 6.280e-57 Identity = 126/226 (55.75%), Postives = 148/226 (65.49%), Query Frame = 1
Query: 1 MDRSRMSTNAFERVSRVASRPEDAESIAVSLGATELDIELVDNEVRRALAAIHGTK-KETYAGRTNETAAGVSYLKKQLERLMKEKAQFKEKKLALQQLQQELPKRAAKYAERPEAAAXXXXXXXXXXXXXXXXXXXXATGGFLSSLKNMIISPTPAEPSPTATVPTPEEDRKAVADTTLVWKETVTSGTYDAPKKTAALYAEDGVLWGTVSEEVRDTPEQIYAYF 675
M+R+RM T+ +RVSR+AS DA SI VSLGA E DI+LVD +VR+ L+ + G +TYAG +NET G ++LKKQL+ LM EKAQ+KEK+LAL QLQQELP E E AA +P P P+P A PT EED+ AVA TT+VWK+TVTSGTYDAPKKTAALYAEDGVLWGTVSEEVRDTPEQIYAYF
Sbjct: 1 MERTRMDTSTLDRVSRLASNVGDATSIQVSLGALEWDIKLVDGDVRKLLSCLQGKPGAQTYAGTSNETEQGRAFLKKQLDGLMAEKAQYKEKRLALLQLQQELPN----LEEDEEYAAG---------------------------------APEPEAPAPPA-APTEEEDKAAVAATTVVWKDTVTSGTYDAPKKTAALYAEDGVLWGTVSEEVRDTPEQIYAYF 188
BLAST of mRNA_Ecto-sp13_S_contig13091.2526.1 vs. uniprot
Match: A0A6H5JT29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT29_9PHAE) HSP 1 Score: 194 bits (493), Expect = 3.050e-56 Identity = 121/225 (53.78%), Postives = 139/225 (61.78%), Query Frame = 1
Query: 1 MDRSRMSTNAFERVSRVASRPEDAESIAVSLGATELDIELVDNEVRRALAAIHGTKKETYAGRTNETAAGVSYLKKQLERLMKEKAQFKEKKLALQQLQQELPKRAAKYAERPEAAAXXXXXXXXXXXXXXXXXXXXATGGFLSSLKNMIISPTPAEPSPTATVPTPEEDRKAVADTTLVWKETVTSGTYDAPKKTAALYAEDGVLWGTVSEEVRDTPEQIYAYF 675
M+R RM T +RVSR+AS DA SI+VSLG + DI+LVD +VR+ LAA+ GT K+TYAG +NET G ++L+KQL+ LMKEKAQ+KEK+LAL QLQ ELP PE AA D+KAVADTTLVWKETVTSGTYDAPKKTAALYAED VLWGTVSEEVRDTPEQIYAYF
Sbjct: 1 MERGRMDTTTLDRVSRLASNVGDAASISVSLGQIDWDIKLVDQDVRKLLAAVQGTSKQTYAGTSNETEQGRAFLQKQLDGLMKEKAQYKEKRLALLQLQDELP-------GIPEDAAY--------------------------------------------------SDQKAVADTTLVWKETVTSGTYDAPKKTAALYAEDAVLWGTVSEEVRDTPEQIYAYF 168
BLAST of mRNA_Ecto-sp13_S_contig13091.2526.1 vs. uniprot
Match: A0A6H5LB09_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB09_9PHAE) HSP 1 Score: 182 bits (462), Expect = 3.460e-49 Identity = 117/226 (51.77%), Postives = 138/226 (61.06%), Query Frame = 1
Query: 1 MDRSRMSTNAFERVSRVASRPEDAESIAVSLGATELDIELVDNEVRRALAAIHGTK-KETYAGRTNETAAGVSYLKKQLERLMKEKAQFKEKKLALQQLQQELPKRAAKYAERPEAAAXXXXXXXXXXXXXXXXXXXXATGGFLSSLKNMIISPTPAEPSPTATVPTPEEDRKAVADTTLVWKETVTSGTYDAPKKTAALYAEDGVLWGTVSEEVRDTPEQIYAYF 675
M+R+RM T+ +RVSR+AS DA SI VSLGA E DI+LVD +VR+ L+ + G +TYAG +NET G ++LKKQL+ LM EKAQ+KEK+LAL QLQQELPK E E AA D+ AVA TT++WK+TVTSGTYDAPKKTAALYAEDGVLWGTVSEEVRDTPEQIYAYF
Sbjct: 1144 MERTRMDTSTLDRVSRLASNVGDATSIQVSLGALEWDIKLVDGDVRKLLSCLQGKPGAQTYAGTSNETEQGRAFLKKQLDGLMAEKAQYKEKRLALLQLQQELPK----LQEDEEYAA----------------------------------------------------DKAAVAATTIIWKDTVTSGTYDAPKKTAALYAEDGVLWGTVSEEVRDTPEQIYAYF 1313
BLAST of mRNA_Ecto-sp13_S_contig13091.2526.1 vs. uniprot
Match: D7FUF9_ECTSI (Similar to Uncharacterized protein conserved in bacteria with a cystatin-like fold n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUF9_ECTSI) HSP 1 Score: 147 bits (370), Expect = 3.190e-37 Identity = 98/226 (43.36%), Postives = 131/226 (57.96%), Query Frame = 1
Query: 46 RVASRPEDAESIAVSLGATELDIELVDNEVRRALAAIH--GTKKETYAGRTNETAAGVSYLKKQLERLMKEKAQFKEKKLALQQLQQELPKR------------AAKYAERPEAAAXXXXXXXXXXXXXXXXXXXXA--TGGFLSSLKNMIISPTPAEPSPTATVPTPEEDRKAVADTTLVWKETVTSGTYDAPKKTAALYAEDGVLWGTVSEEVRDTPEQIYAYF 675
R +S ++A S AVSL A + D+ LVD +VRR L + G + +TYAGR+N T G ++L+ Q++ LM+EKAQ+KEK++ L Q A +E P+A + G S + +P+PA+ + T EDR+AVA+TT++WK+TVTSGTYDAPKKTAALYA DG LWGTVSEEVRDTP+QIYAYF
Sbjct: 8 RQSSVSDEAASTAVSLAAIDWDVALVDKDVRRLLEVLQDDGAEGKTYAGRSNSTPQGKAFLQNQVDGLMREKAQYKEKRMVLMQRXXXXXXXXXXXXXXXXXSVANSSSELPKATPPSLPQTPTNDNSTHSTSRRGSFPLGPRPSPAPGSLRAPSPAKSA------TEAEDRRAVAETTVLWKDTVTSGTYDAPKKTAALYAPDGTLWGTVSEEVRDTPQQIYAYF 227
BLAST of mRNA_Ecto-sp13_S_contig13091.2526.1 vs. uniprot
Match: A0A6H5JX02_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX02_9PHAE) HSP 1 Score: 110 bits (274), Expect = 2.500e-24 Identity = 52/68 (76.47%), Postives = 61/68 (89.71%), Query Frame = 1
Query: 472 PSPTATVPTPEEDRKAVADTTLVWKETVTSGTYDAPKKTAALYAEDGVLWGTVSEEVRDTPEQIYAYF 675
P+P T +P+ DR+AVA+TT++WK+TVTSGTYDAPKKTAALYA DG LWGTVSEEVRDTP+QIYAYF
Sbjct: 15 PTPDRTALSPKLDRRAVAETTVLWKDTVTSGTYDAPKKTAALYAPDGTLWGTVSEEVRDTPQQIYAYF 82
BLAST of mRNA_Ecto-sp13_S_contig13091.2526.1 vs. uniprot
Match: A0A6H5JTS4_9PHAE (PDZ domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JTS4_9PHAE) HSP 1 Score: 108 bits (270), Expect = 1.430e-23 Identity = 89/258 (34.50%), Postives = 124/258 (48.06%), Query Frame = 1
Query: 67 DAESIAVSLGATELDIELVDNEVRRALAAIH-GTKKETYAGRTNETAAGVSYLKKQLERLMKEKAQFKEKKLALQQLQQELPKRAAKYAERPEAAAXXXXXXXXXXXXXXXXXXXXATGGFLSSLKNMIISPT---------------------------PAEP---------------SPTATVPTPEEDRKAVADTTLVWKETVTSGTYDAPKKTAALYAEDGVLWGT------------VSEEVRDTPEQIYAYF 675
D+ S+AVS+ A +LDI LVD +VR LA + G + +YAG ++ T G ++L+++L+ LM KA++KEKKLA QLQ+ LP A + + +L +++ T P +P SP+ + EE+ ++V++TTL W ETVT GTYDAPK+TA LYA D +LWGT VSE VRDTPEQIYAYF
Sbjct: 20 DSASVAVSVAAIDLDIALVDKDVREILACLQEGGEGLSYAGNSSATPEGRAFLERELDGLMVVKARYKEKKLARLQLQRGLPVVAVDWEIARVDGEVREVLGALQGKSEGSPYAGKSKDVLEKTLDDLMREKTEYKEKRLALLELQDDQLKAPGSDAADKPQQPQEKTGSGAVAEVAIASPSGSFA--EEETRSVSETTLAWTETVTRGTYDAPKRTAELYAPDAILWGTEVCGXXXXXXXTVSETVRDTPEQIYAYF 275
BLAST of mRNA_Ecto-sp13_S_contig13091.2526.1 vs. uniprot
Match: A0A6H5JSB2_9PHAE (DUF4440 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JSB2_9PHAE) HSP 1 Score: 89.7 bits (221), Expect = 3.650e-18 Identity = 44/58 (75.86%), Postives = 47/58 (81.03%), Query Frame = 1
Query: 502 EEDRKAVADTTLVWKETVTSGTYDAPKKTAALYAEDGVLWGTVSEEVRDTPEQIYAYF 675
E DRK V TT+ WKE VT GT DAP+KTA LYA DGVLWGTVSEEVRDTPE+IY YF
Sbjct: 101 EGDRKGVEQTTIRWKEMVTLGTPDAPRKTADLYAVDGVLWGTVSEEVRDTPEEIYDYF 158
BLAST of mRNA_Ecto-sp13_S_contig13091.2526.1 vs. uniprot
Match: A0A6H5K6U8_9PHAE (DUF4440 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6U8_9PHAE) HSP 1 Score: 80.5 bits (197), Expect = 1.630e-15 Identity = 37/56 (66.07%), Postives = 45/56 (80.36%), Query Frame = 1
Query: 508 DRKAVADTTLVWKETVTSGTYDAPKKTAALYAEDGVLWGTVSEEVRDTPEQIYAYF 675
D+KAV T W++TVTS T DAPKKTAA+YA+D + WGTVSEEVR+TPE +Y YF
Sbjct: 14 DQKAVDAATRHWRDTVTSNTEDAPKKTAAIYADDALFWGTVSEEVRNTPEHVYDYF 69 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13091.2526.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig13091.2526.1 >prot_Ecto-sp13_S_contig13091.2526.1 ID=prot_Ecto-sp13_S_contig13091.2526.1|Name=mRNA_Ecto-sp13_S_contig13091.2526.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=225bp MDRSRMSTNAFERVSRVASRPEDAESIAVSLGATELDIELVDNEVRRALAback to top mRNA from alignment at Ecto-sp13_S_contig13091:59..1865- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig13091.2526.1 ID=mRNA_Ecto-sp13_S_contig13091.2526.1|Name=mRNA_Ecto-sp13_S_contig13091.2526.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1807bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13091:59..1865- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13091:59..1865- >mRNA_Ecto-sp13_S_contig13091.2526.1 ID=mRNA_Ecto-sp13_S_contig13091.2526.1|Name=mRNA_Ecto-sp13_S_contig13091.2526.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=675bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13091:59..1865- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |