prot_Ecto-sp13_S_contig1309.2525.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1309.2525.1
Unique Nameprot_Ecto-sp13_S_contig1309.2525.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length866
Homology
BLAST of mRNA_Ecto-sp13_S_contig1309.2525.1 vs. uniprot
Match: A0A6H5KHQ1_9PHAE (TRAF-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KHQ1_9PHAE)

HSP 1 Score: 1457 bits (3771), Expect = 0.000e+0
Identity = 784/866 (90.53%), Postives = 808/866 (93.30%), Query Frame = 0
Query:    1 MVRRKEPAQEPDGAMPLPPAADLERPDHPPINVDDLRRSGKIAIWPYVMRDLPLSPVEAFRSEFQSTNRNEASSPSALTAGTRHGVEYFRSCLTDQGATRQIEQEQGPPTDSDLGGLKAKLLGAGDEPPKVARTGHSAVAPAKQPTNSNALPNGPDGRDRHLSSNRLHRSSTGEPRRRPPVAALVEAFSPLPHRGTWDRIECPSGCGEELRVTDLRHHQASLCALRYVSCLMPGCSTLVQARQLRLHLRRDCLKRKEQRVLAKNGKALDDEIACKACNERFPRKQMRMHPATDCQMRMVQCPNCTEMMQARSLADHQRLDCKTAKQKGALHEQAASRPTEIECGACYGTVVTTQLRRHTSDECPSRVVACPNKYLGCGEELPASNVAYHLRKQCAVAITREDRAAKHLFRRQRVQCSGCGYWVVLQDLPRHHREKCPNRRVPCKHWELGCPAMLRLSAMDDHLKVDRLLDPRACLAFDGGKAYITLGESDRKPPWTAEMWVWRPGLVEGTREKTRTALKALWEFHRARGKLAMTDRRLALLEPLVVDVATRAAKERSEEAAKMRDKLTDEMIAAATVRDDAKVDLVVSVVVLSNSVASAARGVEELTAQDRLRGFDRLALGSTPWYAASRGPSRAGFDRGEGIRGVNQSLGTGNTVVESKEVIGEENMPLGTAAHGPKSPAGLGTAPTKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQDDGQPSAQATNSIPLDHDGVVAGSGGASDNDEDDIDSMLLKIFKEQQAFEASEEAKLRKNEAGFWAEWIALTGASLARRVLALEAETLPRLKDEAVAITGIANEALFNTRGDASGEGVEEEVLDEEGGARAHESRTSRKQ 866
            MVRRKEPAQEPDGAMP PPAAD+ERPDHPP+NVD LRRSGKI+IWPYVMRDLPLSPVEAFRSE QST RNEASSPSALTAGTRH VEYFRSCLT +GATRQ+EQEQGP TDSDLGGL+A+LLGAGDEPP VARTGHSAVAPAKQ TN+NALPNGPDGR RHL SNRL R STG P RRPPVA L EA S L HRGTWDRIECPSGCGEEL VTDLRHH ASLCALRYVSC MPGCSTLVQARQLRLHLRRDC KRKEQRVLAKNGKALDDEIACKACNERFPRKQMRMH ATDCQ+RMVQCPNC EMMQARSLADHQR DCKTAKQKGALHEQAASRPTEIECGAC+GTVVTTQLRRHTSDECPSRVVACPNKYLGCGEELPA +VAYHLRKQCAVAITREDRAAKHLFRRQRVQCSGCGYWVV QDLPRHHREKCPNRRVPCKHWELGCPAMLRLSAMDDHLKVDRLLDPRACLAFDGG+AYITLGESDRKPPWTAEMWVWRPGLVEGTREKTRTALKALWEFH+ARGKLA+T+RRLALLEPL+VDVATRAAKERSEEAAK RDKLTDEMIAAATVRDDAKVDLVVSVVVLSNSVASAARGVEELTAQDRLRG DRLALGSTPWY+AS GPSRAGF R EGIR VNQSLG G TVVESKEVIGEEN PLGT A  PKSP GLGTAPT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX QDDGQPSAQ TNSIPLD DGVVAGSGGAS ND+DDIDSMLL I KEQQAFEASEEAKLR N+A FWAEWIALTG SLARRVL L+AETLPRLK+EAVAITGIANEALF+TRGDA+ EGVEE V DEEGGARAH+S TS KQ
Sbjct:    1 MVRRKEPAQEPDGAMPRPPAADVERPDHPPVNVDHLRRSGKISIWPYVMRDLPLSPVEAFRSELQSTTRNEASSPSALTAGTRHCVEYFRSCLTGEGATRQMEQEQGPRTDSDLGGLEAELLGAGDEPPVVARTGHSAVAPAKQATNNNALPNGPDGRGRHLPSNRLRRPSTGGPSRRPPVAPLAEAVSSLQHRGTWDRIECPSGCGEELWVTDLRHHHASLCALRYVSCFMPGCSTLVQARQLRLHLRRDCFKRKEQRVLAKNGKALDDEIACKACNERFPRKQMRMHLATDCQIRMVQCPNCMEMMQARSLADHQRFDCKTAKQKGALHEQAASRPTEIECGACHGTVVTTQLRRHTSDECPSRVVACPNKYLGCGEELPALDVAYHLRKQCAVAITREDRAAKHLFRRQRVQCSGCGYWVVCQDLPRHHREKCPNRRVPCKHWELGCPAMLRLSAMDDHLKVDRLLDPRACLAFDGGRAYITLGESDRKPPWTAEMWVWRPGLVEGTREKTRTALKALWEFHQARGKLAITERRLALLEPLLVDVATRAAKERSEEAAKTRDKLTDEMIAAATVRDDAKVDLVVSVVVLSNSVASAARGVEELTAQDRLRGLDRLALGSTPWYSASPGPSRAGFCRDEGIRSVNQSLGAGKTVVESKEVIGEENRPLGTVAESPKSPTGLGTAPTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQDDGQPSAQVTNSIPLDPDGVVAGSGGASGNDKDDIDSMLLNISKEQQAFEASEEAKLRMNKAVFWAEWIALTGPSLARRVLGLQAETLPRLKEEAVAITGIANEALFDTRGDATAEGVEEGVPDEEGGARAHKSGTSPKQ 866          
BLAST of mRNA_Ecto-sp13_S_contig1309.2525.1 vs. uniprot
Match: A0A835YWB7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWB7_9STRA)

HSP 1 Score: 221 bits (563), Expect = 5.410e-56
Identity = 148/412 (35.92%), Postives = 199/412 (48.30%), Query Frame = 0
Query:  201 ECPSGCGEEL--RVTDLRHHQASLCALRYVSCLMPGCSTLVQARQLRLHLRRDCLKRKEQRVLAKNGKALDDEIACKACNERFPRKQMRMHPATDCQMRMVQC--PNCTEMMQARSLADHQRLDCKTAKQKGALHEQAASRPTEIECGACYGTVVTTQLRRHTSDECPSRVVACPNKYLGCGEELPASNVAYHLRKQCA---------------------------VAITREDRAAKHLFRRQRVQCSGCGYWVVLQDLPRHHREKCPNRRVPCKHWELGCPAMLRLSAMDDHLKVDRLLDPRACLAFDGGKAYITLGESDRKPPWTAEMWVWRPGLVEGTREKTRTALKALWEFHRA-RGKLAMTDRRLALLEPLVVDVATRAAKERSEEAAKMRDKLTDEMIAAATVRDD 580
            +CP GCG ++  R   LR H  + CA R V+C   GC  LVQAR L LH   +C     +R LA+  +A        A + R  R++   H    C +R+++C    C   + A ++A+H    C        +   AA+RP  + C  C+  V    LR H   +CP R+V CP+   GCG E+ A ++  HL   C+                           V   R++RA + L R Q  QC  CG  +  Q L  H   +CPNR VPCKHWELGC A +RL  M  HL VD     R CL   GG+AY+ LGE D  PPWTAE WV+R  LV+  RE+ R  L+ +W +    R + A T +  AL E L      RAA + S  A     ++TD +I AA  RDD
Sbjct:  172 QCPQGCGCDVPARGPALRRHLGAECASRVVTCPELGCGALVQARSLPLHAAAECAAAARRRALAQRAEA--------AASTRADRER---HAREACPLRLLRCGAAGCGAAVTAGAMAEHVATVCAATLASRRVLAAAAARPKHVRCSGCHAAVAVDALRWHVEQDCPQRLVVCPHAESGCGAEVAACDLPAHLLHDCSGDDDVLYXXXXXXXXXXXXXXXXXXXRVKRERDERADRSLERMQMTQCRACGRRLQAQRLRAHALLRCPNRVVPCKHWELGCRARVRLGDMCAHLAVDAARR-RPCLLLGGGQAYVHLGERDVPPPWTAEFWVYRLPLVDEVREQMRETLQEVWRYQEGVRMQEAATAQIAALEETL------RAATDLSARA-----EVTDALIRAAGQRDD 560          
BLAST of mRNA_Ecto-sp13_S_contig1309.2525.1 vs. uniprot
Match: A0A8J2SAI7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SAI7_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 4.070e-7
Identity = 58/219 (26.48%), Postives = 87/219 (39.73%), Query Frame = 0
Query:  205 GCGEELRVTDLRHHQASLCALRYVSCLMPGCSTLVQARQLRLHLRRDCLKRKEQRVLAKNGKALDDEIA----------CKACNERF-PRKQMRMHPATDCQMRMVQCPNC--TEMMQARSLADHQRLDCKTAKQKGALHEQAASRPTEIECGACYGTVVTTQLRRHTSDECPSRVVACPNKYLGCGEELPASNVAYHLRKQCAVAITREDRAAKHLFR 410
            GCG +L VT L  H+ + C  R V C +PGC   ++A+ L+ H++ +CL+R     L    K   +E            C  C ER  P  + R+H    C  R VQCPN    E +    +  H   DC        L+  A           C  T    ++R H   E  S    CP +   C  ++    + +   +Q       + +AA+  FR
Sbjct:  507 GCGAQLPVTQLPRHEVTKCRWRGVPCPIPGCGREIRAKDLKQHMKEECLRRPVGCRLGCGLKVPYEEREHHENNVCTRPCMWCGERIGPESRRRLHERFHCPKRHVQCPNLCGVEGVAEEDMEAHCIKDC-------PLYPSACP-------NGCAWTGYRREVRIHIDGESGS----CPERKRRCRYDMLGRRIRFRTNEQPPCHSHEQYKAAETAFR 707          
BLAST of mRNA_Ecto-sp13_S_contig1309.2525.1 vs. uniprot
Match: A0A6G1P8Z6_9TELE (TNF receptor-associated factor n=1 Tax=Channa argus TaxID=215402 RepID=A0A6G1P8Z6_9TELE)

HSP 1 Score: 63.5 bits (153), Expect = 1.270e-6
Identity = 38/165 (23.03%), Postives = 65/165 (39.39%), Query Frame = 0
Query:  228 VSCLMPGCSTLVQARQLRLHLRRDCLKRKEQRVLAKNGKALDDEIACKACNERFPRKQMRMHPATDCQMRMVQCPNCTEMMQARSLADHQRLDCKTAKQKGALHEQAASRPTEIECGACYGTVVTTQLRRHTSDECPSRVVACPNKYLGCGEELPASNVAYHLRK 392
            V C   GCS  ++ R L  HL                 +     + C  C +   +  +  H  +DCQ R+++CP+C E                   ++  LHEQ       ++C  C   ++  Q+  H   +CP   +AC     GC E++   N+A H+++
Sbjct:  141 VCCPNGGCSEKMELRHLEHHL----------------AQCEFSTVLCSQCQQSIRKSHLEEHKTSDCQKRLIECPDCVENF---------------VYEERELHEQRCPF-ANVKCQYCEMDLIRDQMGSHCDTDCPKAPIACNFSVFGCKEKMQRHNLAQHMQE 273          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1309.2525.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KHQ1_9PHAE0.000e+090.53TRAF-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A835YWB7_9STRA5.410e-5635.92Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8J2SAI7_9STRA4.070e-726.48Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A6G1P8Z6_9TELE1.270e-623.03TNF receptor-associated factor n=1 Tax=Channa argu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001293Zinc finger, TRAF-typePFAMPF02176zf-TRAFcoord: 412..462
e-value: 4.0E-7
score: 30.6
coord: 339..389
e-value: 6.8E-6
score: 26.7
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 358..394
score: 8.835
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 414..450
score: 9.509
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 333..398
e-value: 2.1E-8
score: 35.8
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 272..332
e-value: 2.0E-8
score: 36.2
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 196..258
e-value: 6.8E-5
score: 25.0
NoneNo IPR availablePANTHERPTHR10131TNF RECEPTOR ASSOCIATED FACTORcoord: 204..323
NoneNo IPR availablePANTHERPTHR10131:SF101TNF RECEPTOR-ASSOCIATED FACTOR FAMILY PROTEIN DDB_G0268444-RELATEDcoord: 204..323
NoneNo IPR availablePANTHERPTHR10131TNF RECEPTOR ASSOCIATED FACTORcoord: 321..393
coord: 410..464
NoneNo IPR availablePANTHERPTHR10131:SF101TNF RECEPTOR-ASSOCIATED FACTOR FAMILY PROTEIN DDB_G0268444-RELATEDcoord: 321..393
coord: 410..464
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 272..326
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 202..256
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 417..472
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 346..402

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1309contigEcto-sp13_S_contig1309:14630..17879 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1309.2525.1mRNA_Ecto-sp13_S_contig1309.2525.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1309 14630..17879 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1309.2525.1 ID=prot_Ecto-sp13_S_contig1309.2525.1|Name=mRNA_Ecto-sp13_S_contig1309.2525.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=866bp
MVRRKEPAQEPDGAMPLPPAADLERPDHPPINVDDLRRSGKIAIWPYVMR
DLPLSPVEAFRSEFQSTNRNEASSPSALTAGTRHGVEYFRSCLTDQGATR
QIEQEQGPPTDSDLGGLKAKLLGAGDEPPKVARTGHSAVAPAKQPTNSNA
LPNGPDGRDRHLSSNRLHRSSTGEPRRRPPVAALVEAFSPLPHRGTWDRI
ECPSGCGEELRVTDLRHHQASLCALRYVSCLMPGCSTLVQARQLRLHLRR
DCLKRKEQRVLAKNGKALDDEIACKACNERFPRKQMRMHPATDCQMRMVQ
CPNCTEMMQARSLADHQRLDCKTAKQKGALHEQAASRPTEIECGACYGTV
VTTQLRRHTSDECPSRVVACPNKYLGCGEELPASNVAYHLRKQCAVAITR
EDRAAKHLFRRQRVQCSGCGYWVVLQDLPRHHREKCPNRRVPCKHWELGC
PAMLRLSAMDDHLKVDRLLDPRACLAFDGGKAYITLGESDRKPPWTAEMW
VWRPGLVEGTREKTRTALKALWEFHRARGKLAMTDRRLALLEPLVVDVAT
RAAKERSEEAAKMRDKLTDEMIAAATVRDDAKVDLVVSVVVLSNSVASAA
RGVEELTAQDRLRGFDRLALGSTPWYAASRGPSRAGFDRGEGIRGVNQSL
GTGNTVVESKEVIGEENMPLGTAAHGPKSPAGLGTAPTKGETAGEPKEAI
GEENVPPGTATDSPKRPTKLSMTPTQDDGQPSAQATNSIPLDHDGVVAGS
GGASDNDEDDIDSMLLKIFKEQQAFEASEEAKLRKNEAGFWAEWIALTGA
SLARRVLALEAETLPRLKDEAVAITGIANEALFNTRGDASGEGVEEEVLD
EEGGARAHESRTSRKQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001293Znf_TRAF
IPR013083Znf_RING/FYVE/PHD
IPR008974TRAF-like