mRNA_Ecto-sp13_S_contig1309.2524.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1309.2524.1
Unique NamemRNA_Ecto-sp13_S_contig1309.2524.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1309.2524.1 vs. uniprot
Match: D7G1S0_ECTSI (HSF_DOMAIN domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1S0_ECTSI)

HSP 1 Score: 522 bits (1344), Expect = 1.370e-177
Identity = 264/292 (90.41%), Postives = 273/292 (93.49%), Query Frame = 1 
Query:    1 QVLAFEGLLPSYYNHKNFLSFVRQLNFYGFKKVKGGASRSESSDSWEEFMHPQFRQGRRDLLVSIKRQKDGGHLKRKQDDLRKSDILNTLVVEVGSMRDDLEMANGKLDDVLSLLSGITGTKQPGELFVQQHQGMRGDDDRVIGRGCSNKSTSVRGRFGRWGAGVGGGGDTDQRCLGAYAHGEQLDGSSAPRFHTDQQRRQEWHGHEAFPHSRWPCPAGQYPEENNEHNQMRHHVGQPQQTLPPLAAVTARSSEVAPAMPSYHLLPPMYRSQSRRDSDNSLGPSEHDRGGED 876
            +VLAFEGLLPSYYNHKNFLSFVRQLNFYGFKKVKGGASRSESSDSWEEFMHPQFRQGRRDLLVSIKRQKDGGHLKRKQDDLRKSDILNTL VEVGSMR DLEMANGKLDDVLSLLSGITGTKQPGEL VQQHQ MRGDD    GRG S++S+SV G FGRWGAGVGGGGDT QRCLGAYAH EQLDGSSAPRFHTDQQRRQEW GH AFPHSRWPCPA QYPEENNEHNQMRHHVGQ QQTLPPLAAVTAR+SEVA  +PSYHLLPPMYRS+SRRDSDNSLGPSEH++GGED
Sbjct:   12 KVLAFEGLLPSYYNHKNFLSFVRQLNFYGFKKVKGGASRSESSDSWEEFMHPQFRQGRRDLLVSIKRQKDGGHLKRKQDDLRKSDILNTLAVEVGSMRVDLEMANGKLDDVLSLLSGITGTKQPGELSVQQHQSMRGDD----GRGGSDRSSSVHGGFGRWGAGVGGGGDTGQRCLGAYAHSEQLDGSSAPRFHTDQQRRQEWQGHVAFPHSRWPCPAEQYPEENNEHNQMRHHVGQAQQTLPPLAAVTARASEVALTVPSYHLLPPMYRSRSRRDSDNSLGPSEHEQGGED 299
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1309.2524.1 vs. uniprot
Match: D7FV29_ECTSI (Heat Shock transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV29_ECTSI)

HSP 1 Score: 175 bits (444), Expect = 1.260e-43
Identity = 137/329 (41.64%), Postives = 164/329 (49.85%), Query Frame = 1 
Query:    4 VLAFEGLLPSYYNHKNFLSFVRQLNFYGFKKVKGG-ASRSES---------------SDSWEEFMHPQFRQGRRDLLVSIKRQKDGGHLKRKQDDLRKSDILNTLVVEVGSMRDDLEMANGKLDDVLSLLSGITGTKQPGELF--VQQ-HQGMRGDDDRVIGRGCSNKSTSVRGRFGRWGAG-----------VGGG---GDTDQRCLGAYAHGEQLDGSSAPRFHTDQQRRQEWHGHEAFPHSRWP------CPAGQYPEENNEHNQMRHHVGQPQQTLPPLA-AVTARSSEVAPAMPSYHLLPPMYRSQSRRDSDNSLGPSEHDRGG 870
            VLAFEGLLPSYYNHK FLSFVRQLNFYGFKKVKG  ASR  S               SDSW+EF HP+FR+GRRDLL  IKRQKDGG +KRKQ +L K   L+TL  +V  M  DL  ANGKLDD++ +LSG+ G      +   VQ+ + G  GD     G G S+   +        GA            VG G   G TDQ       +G  LD    P      Q+ Q W GH  +P    P      C            NQ+R+   Q    LP L  AV A +S V+ A P    LPP+      R   N+L  S H++ G
Sbjct:   28 VLAFEGLLPSYYNHKKFLSFVRQLNFYGFKKVKGDPASRMSSASSVHPPPSAVAADESDSWQEFRHPEFRRGRRDLLAGIKRQKDGGRVKRKQAELEKLGTLSTLTTDVDMMSVDLRAANGKLDDIMLMLSGMAGGNLHSSMIPPVQRGNMGRGGDGSFGFGIGGSSSDQNSYNTAETAGAAAAAFGGDRQQVVGAGSRDGSTDQEGHDPSVYGAPLDQRHTPCLPVGHQQ-QGWQGHGPYPQPHQPSFSTERCLVAP--------NQVRYQAAQSHPALPSLPLAVAAHASHVSAAEPRRQQLPPLCYPP--RGDGNNLASSGHEQVG 345
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1309.2524.1 vs. uniprot
Match: A0A6H5LDD9_9PHAE (HSF_DOMAIN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDD9_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 1.190e-40
Identity = 88/142 (61.97%), Postives = 99/142 (69.72%), Query Frame = 1 
Query:    4 VLAFEGLLPSYYNHKNFLSFVRQLNFYGFKKVKGGASR-------------------SESSDSWEEFMHPQFRQGRRDLLVSIKRQKDGGHLKRKQDDLRKSDILNTLVVEVGSMRDDLEMANGKLDDVLSLLSGITGTKQP 372
            VL FEGLLPSYYNHK FLSFVRQLNFYGFKKVKGGAS                    +  SDSWEEF HPQFR+GRRDLLV IKRQKDGG LKRK+ D +KSDIL TL  +V ++ +DL  ANGKLD ++S+L G T    P
Sbjct:    9 VLVFEGLLPSYYNHKKFLSFVRQLNFYGFKKVKGGASTRSRTSAADSQGEAGAGSTGARESDSWEEFRHPQFRRGRRDLLVGIKRQKDGGRLKRKRADSQKSDILTTLRADVDTLSEDLREANGKLDTIISMLMGATSGNHP 150
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1309.2524.1 vs. uniprot
Match: D7G1S2_ECTSI (Heat Shock transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1S2_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 1.510e-32
Identity = 72/99 (72.73%), Postives = 74/99 (74.75%), Query Frame = 1 
Query:    1 QVLAFEGLLPSYYNHKNFLSFVRQLNFYGFKKVKGGAS-RSESS------------------DSWEEFMHPQFRQGRRDLLVSIKRQKDGGHLKRKQDD 240
            QVL FEGLLPSYYNHK FLSFVRQLNFYGFKKVKGGAS RS SS                  DSWEEF HPQFR+GRRDLLV IKRQKDGG LKRK+DD
Sbjct:   39 QVLVFEGLLPSYYNHKKFLSFVRQLNFYGFKKVKGGASTRSRSSAADSQGEAGAGSTGARESDSWEEFRHPQFRRGRRDLLVGIKRQKDGGRLKRKRDD 137
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1309.2524.1 vs. uniprot
Match: D7G9I4_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9I4_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 6.890e-28
Identity = 62/95 (65.26%), Postives = 70/95 (73.68%), Query Frame = 1 
Query:    1 QVLAFEGLLPSYYNHKNFLSFVRQLNFYGFKKVKG----------------GASRSESSDSWEEFMHPQFRQGRRDLLVSIKRQKDGGHLKRKQD 237
            +VLAFEGLLPSYYNHK FLSFVRQLNFYGFKKV+G                 A+ +E S SWEEF HPQFR+GRRDLLV IKRQKD G +KR+Q+
Sbjct:   51 KVLAFEGLLPSYYNHKKFLSFVRQLNFYGFKKVRGRGASSRASSXXXXXXXXAAEAEESASWEEFKHPQFRRGRRDLLVGIKRQKDDGRMKRRQE 145
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1309.2524.1 vs. uniprot
Match: A0A7S2HSW5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HSW5_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 4.710e-13
Identity = 50/127 (39.37%), Postives = 68/127 (53.54%), Query Frame = 1 
Query:   10 AFEGLLPSYYNHKNFLSFVRQLNFYGFKKVKGGASRSESSDSWEEFMHPQFRQGRRDLLVSIKRQKDGGHLKRKQDDLRKSDILNTLVVEVGSMRDDLEMANGKLDDVL----SLLSGITGTKQPGE 378
            AF  LLP +Y HKNF SFVRQLNFYGF+K++   + S S+  W  F H +FR+G+  LL  IKR     H +    D   ++ L T   EV  +RD +E     +D +     +LLS      Q G+
Sbjct:   31 AFSELLPRFYKHKNFTSFVRQLNFYGFRKLRADDASSFSNPQWWGFRHEKFRRGQYHLLRLIKR---SSHFETPDQDSEGTEELKT---EVFRLRDRVEQLQSTIDQLTKVTNTLLSERNNESQAGK 151
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1309.2524.1 vs. uniprot
Match: A0A7S3ZS76_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZS76_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 2.180e-10
Identity = 33/66 (50.00%), Postives = 46/66 (69.70%), Query Frame = 1 
Query:   22 LLPSYYNHKNFLSFVRQLNFYGFKKVKGGASRSESSDSWEEFMHPQFRQGRRDLLVSIKRQKDGGH 219
            ++P Y+ H NF SFVRQLNFYGF+K++  A+   ++ +  EF HP FR+GR DLLV I+R +   H
Sbjct:   93 IIPQYFKHNNFRSFVRQLNFYGFRKLRADANAGPAAQARWEFKHPNFRRGRHDLLVLIRRAEHYDH 158
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1309.2524.1 vs. uniprot
Match: A0A7S2WDE9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WDE9_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 2.800e-10
Identity = 43/116 (37.07%), Postives = 69/116 (59.48%), Query Frame = 1 
Query:   10 AFEGLLPSYYNHKNFLSFVRQLNFYGFKKVK-GGASRSESSDSWEEFMHPQFRQGRRDLLVSIKRQKDGGHLKRKQDDLRKSDILNTLVVEVGSMRDDLEMANGKLDDVLSLLSGI 354
            AF  LLP ++ HKNF SFVRQLNFYGF+K++  GA  S+   +W EF H +F +G+ +LL  IKR     H +    D  + +++  L  EV  +R+ ++  +  ++ + SL+  +
Sbjct:   92 AFANLLPRFFKHKNFRSFVRQLNFYGFRKLRTDGALISDRPSNWWEFRHEKFLRGKPELLTHIKR---ANHYETAPAD--QVELVEDLKSEVFQLRERIDDMSSTIEKLTSLVDTL 202
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1309.2524.1 vs. uniprot
Match: A0A7S3ZS73_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZS73_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 3.100e-10
Identity = 48/145 (33.10%), Postives = 72/145 (49.66%), Query Frame = 1 
Query:   22 LLPSYYNHKNFLSFVRQLNFYGFKKVKGGASRSESSDSWEEFMHPQFRQGRRDLLVSIKRQKDGGHLKRKQDDLRKSDILNTLVVEVGSMRDDLEMANGKLDDVLSLLS----GITG------TKQPGELFVQQHQGMRGDDDRV 426
            ++P Y+ H NF SFVRQL+ YGF+K++  A+   ++ +  EF HP FR+GR DLLV I R    GH     D   +      L  EV  +   +      LD V+ +L+    G+ G      T  P +  V++   +  DDD +
Sbjct:   31 IIPQYFRHNNFRSFVRQLHHYGFQKLRADANAGPAAQAQCEFKHPNFRRGRHDLLVLIDRDTRPGH--GGPDAAAQRARQAELGREVADLHSKVANLTETLDKVVGVLASQGLGLDGEHLLSLTHAPEDSGVEEEASVDSDDDEI 173
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1309.2524.1 vs. uniprot
Match: A0A5D6XXE4_9STRA (HSF_DOMAIN domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XXE4_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.220e-9
Identity = 37/64 (57.81%), Postives = 45/64 (70.31%), Query Frame = 1 
Query:   16 EGLLPSYYNHKNFLSFVRQLNFYGFKKVKGGASRSESSD--SWEEFMHPQFRQGRRDLLVSIKR 201
            E ++P Y+ HKNF SFVRQLNFYGF+KV+  A  + S D   W EF H +F +GRRDLL  IKR
Sbjct:  227 EHVIPVYFKHKNFSSFVRQLNFYGFRKVRVDAETAASVDPKEWWEFRHDKFVRGRRDLLREIKR 290
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1309.2524.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1S0_ECTSI1.370e-17790.41HSF_DOMAIN domain-containing protein n=1 Tax=Ectoc... [more]
D7FV29_ECTSI1.260e-4341.64Heat Shock transcription factor n=1 Tax=Ectocarpus... [more]
A0A6H5LDD9_9PHAE1.190e-4061.97HSF_DOMAIN domain-containing protein n=1 Tax=Ectoc... [more]
D7G1S2_ECTSI1.510e-3272.73Heat Shock transcription factor n=1 Tax=Ectocarpus... [more]
D7G9I4_ECTSI6.890e-2865.26N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
A0A7S2HSW5_9STRA4.710e-1339.37Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S3ZS76_9STRA2.180e-1050.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2WDE9_9STRA2.800e-1037.07Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3ZS73_9STRA3.100e-1033.10Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A5D6XXE4_9STRA1.220e-957.81HSF_DOMAIN domain-containing protein n=1 Tax=Pythi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1309contigEcto-sp13_S_contig1309:3875..10893 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score427.9
Seed ortholog evalue3.7e-117
Seed eggNOG ortholog2880.D7G1S0
Model size2538
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.sequence-specific DNA binding
EggNOG OGsCOG5169@1,KOG0627@2759
Ec32 ortholog descriptionHeat Shock transcription factor
Ec32 orthologEc-14_003740.1
Cds size882
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1309.2524.1prot_Ecto-sp13_S_contig1309.2524.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1309 4565..9384 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462701.0784717-UTR-Ecto-sp13_S_contig1309:3874..39591681462701.0784717-UTR-Ecto-sp13_S_contig1309:3874..3959Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1309 3875..3959 +
1681462701.0948782-UTR-Ecto-sp13_S_contig1309:4502..45641681462701.0948782-UTR-Ecto-sp13_S_contig1309:4502..4564Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1309 4503..4564 +
1681462701.1494665-UTR-Ecto-sp13_S_contig1309:9384..108931681462701.1494665-UTR-Ecto-sp13_S_contig1309:9384..10893Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1309 9385..10893 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462701.1048884-CDS-Ecto-sp13_S_contig1309:4564..46521681462701.1048884-CDS-Ecto-sp13_S_contig1309:4564..4652Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1309 4565..4652 +
1681462701.1234171-CDS-Ecto-sp13_S_contig1309:7315..77701681462701.1234171-CDS-Ecto-sp13_S_contig1309:7315..7770Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1309 7316..7770 +
1681462701.1335216-CDS-Ecto-sp13_S_contig1309:8490..86781681462701.1335216-CDS-Ecto-sp13_S_contig1309:8490..8678Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1309 8491..8678 +
1681462701.1409907-CDS-Ecto-sp13_S_contig1309:9233..93841681462701.1409907-CDS-Ecto-sp13_S_contig1309:9233..9384Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1309 9234..9384 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1309.2524.1

>prot_Ecto-sp13_S_contig1309.2524.1 ID=prot_Ecto-sp13_S_contig1309.2524.1|Name=mRNA_Ecto-sp13_S_contig1309.2524.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=294bp
MHPQFRQGRRDLLVSIKRQKDGGHLKRKQDDLRKSDILNTLVVEVGSMRD
DLEMANGKLDDVLSLLSGITGTKQPGELFVQQHQGMRGDDDRVIGRGCSN
KSTSVRGRFGRWGAGVGGGGDTDQRCLGAYAHGEQLDGSSAPRFHTDQQR
RQEWHGHEAFPHSRWPCPAGQYPEENNEHNQMRHHVGQPQQTLPPLAAVT
ARSSEVAPAMPSYHLLPPMYRSQSRRDSDNSLGPSEHDRGGEDSDIVVWE
GCWKGGVGSSFDAITHTRSEGILVSPTNKGALREVLATAPLDS*
back to top

mRNA from alignment at Ecto-sp13_S_contig1309:3875..10893+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1309.2524.1 ID=mRNA_Ecto-sp13_S_contig1309.2524.1|Name=mRNA_Ecto-sp13_S_contig1309.2524.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=7019bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1309:3875..10893+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTTCTGGCGTTCGAGGGGCTTCTGCCATCGTACTATAACCACAAGAA
TTTCCTCTCCTTCGTTCGGCAGCTCAACTTCTACGGTGAGTGGTTGTCCT
CTGCGAATTCGTGGTGGAAAGAGGACCTGAGAGGGGAAAAGCGTCCCGGC
GTGTCGTGCGGCTCACTTCCTACGTGTGGTTGGCGCTATTAGATAAAATT
AGACCATCTGACCAGTCAACGTTGACTGGTCAGATGGTCTAATTTTATCT
AATAAAAGATATGCGCTCAGTTCGTTTGCACCCGGCTGGATCACTTGCGA
GACATGAGAGTATGGATCTCCGGGGACGGACCCCTCGCCAAACGCTGCCG
TAATTGATCGTAATTTTTCTCTGTGTGAAAAGTGATCCAGCCGGTACCGA
ACTCGTGCGGGTATCCTTTATTAGATAGAATTAGACCAGATGGTCTAATT
TTATCTAATAGGCGCTCCTTGTTGCAGGGTTTGGCGGTTGCGGTGCGTAG
AGGGAGAGAGGTGGCTCGCATGCGAGACGCTCCGCAGCGCTGCCCATGTC
CCCTTGCGGTAGGAAGTCGGATCTCTTAACTCAAATTGTTTTCCTTCAAT
GTTACCTCTTTTCGCATCCATCGCGAAGGCTTCAAAAAGGTCAAAGGGGG
GGCATCGCGCTCGGAGAGCTCTGATTCCTGGGAGGAGTTCATGCACCCTC
AGTTCCGCCAGGGTCGCAGGGATCTCCTCGTTAGCATCAAGCGGCAGAAA
GACGGCGGGCATCTGAAGCGCAAACAAGGTGTGACGACATGTTGATCCGT
TACGGCGTGGCTGTAGGCCTTGTCGATAGCTGTGGTATTTCTCGAAAAAA
AAATATATACATGCAAACGTGGAGTTGGCTTGCGGCCATGGAGGGCGTCC
GCGTCAGTTAGTTGGACCAGTACAGCCATTAGTCAAGAACTGAGTGGAGA
CCGTAATGTGTTTTTATTGAAGACAACAACATCAACAACAACAACAACAA
ACCTGTATTTTCTAAAAATAAAATGAAGAATTCAAGCTCAACGGAACGTA
AACACCAGGAACACACGAACCCTTCTGACTTCAAACGTGAGGCTCGACGA
TTCGACGATTGACGTGTTTGAACAAAATTTGGCTCGTAACGACCAGTTCG
GGGTATTGTAAGATCCTCTGGAGCCTGTTGTGCCTGAGTATGCCTGGAGA
TTTCGCCGTTGAGAAAAAATTGAAAACAAAATTTGGAACTCCAGCTTGCG
GCAGCGAACAGACAACGCGCACATCCGAGGCCAACTATCAACAACAGCAG
AGGCCGAGCCGCAGTACCTGCTCTGCTCTGGGTATCTACTTGTAGTCATG
CGCGATGTGCTCCTGGCGGGTTGTTGTTGTTGCGCGGGCCCAAGAATACC
AACGGCTCGCTTGACCTCGGTGAATGATCGACACGGCGGCGATCATGCAG
CTTGCTGAACATACACATCATCACATGAGAAGAAGCACTACAGTAGTACA
TGCACATAATACAGACCGCCAGCACGTGGGACCTGACAGTCGCATCGCTC
ACGCCATGGGATAAGCAGATCGATGGGCACCTCGGCGGGCGTGAGGGTCT
ACCTCTTCTGTACGTTCACACTGGACGCGATTGCCCGCGATCGGTTAAAC
TTTTTTGGTAGCTGCGCCCGTGCCGTCGGCCTTCTTCATGAACATATATG
TATATATTTTTCTCCTATTATTGGACTCTGTCGTCTGCCACTCTGGCCCC
TATCCTCCACTTCTACCAGCTAGACGACCCAACCGGGGTCACATAGGAGG
GGGGGGCTGGACCCCCTCCTGCTGTTCCTACCTTCAACATTTTCATCGCG
AGGAGCGTACAGCAATCCCTTTCCTCGCGACTTTTTAAGTCGATCTAGGT
TACCAACAGAAATTTGCGGTGCGTCGCTTCCAACTTAGACCAGACCAGGA
TCGATTTGTATGTTTTCAAAAAACTCAATTTGCGGGTTGCCATCTGCCGG
GGCACGAACCCATGACCTGGCCCGTACATCGTAGTGGTCTGCTAGGGTAC
CCACGAGACCACCGGGGCGACCGGCCATGAGTGTTGCGTCTAACTTGCCA
CAAATGGCAAACGGCTTGTTGCGTCGTTGCAATAAATTAGAGACTGCTCA
CGCCGTGGGAAATTTGGCAGGCTTGAGATCACATTGCATGTGGTGGGTCA
GGTGTGCGCCTGCCGCATCTGTACCGCGCTATGTCTACGGTGTGATGTGT
GTTGGTGCTAGTTGATGCTCTGTGTGTGGCGGGCGATGTGCACATTTGGA
ATATTTTTTCGATGCATCTTGCCGAGGCACGTGGTCGCGTTCGTCCGCAA
TGTGCAATTCTACCTGCGCACGGTGGAAAGACTTCATATCTAGGACATAT
TGACTAGCATCAATACAGCATTTTTCGGTTCTTGCTCAAACACGTCATTG
ATTTAAATTCCCTGCACAGAGCAACCGACATCTACTCTTATACCGTAATA
GGTTCGACGTGATCGCTCGCCCGCCCGCCCGCCCGCCCGCCCAACCTTCA
CAGCTCGAGTGTTCCACCTACCACAAGCAAGCTAACGCCGGGTTCGGCGG
TGTTAGAAATGTCTCTTCCGACTGGTTCCACGGATCGATATCGGTAGTTT
TTCCCGCCCTCTCGGCTACGCAGAAAATCGAGCGTTGAAAGTCGGTGTCG
GGGGGGGGTGCGCATGTTCGTAGTAGGCGTTAGACGAGGCTTGTTGGCCG
GATTATCACAGTTGCGAGTTTTTGTCCACGCCCGCGCACTTTGAAGAAGG
ATATGAAGCGTCAAGTTCGTACGTCAGCACCTGATTTGGTCTGGCCTCTT
TCTACACGTTGTCTTTCTCCCACCGCCGTGATAGCCAGGAATGCTATCGA
CGAGGTAGTCCGTACGAGTTGCTGACTCCTGTGTGTAGAGGAAGAACGAT
CAACAGTAGAAAGTCAAACGAAAGTACCGGGTACATATCAACACTGAAGC
GGCAAAGCCAGATGAGATGGTGTGATTGGTTGCCCCCCATATTCTAACGG
CTTCCTCTCCGAAACTACTATGATGGCTGCCAGGCCGTGAGGTCAACCCT
CGGCAAAAAATACCTAAGATTCGTCTACCGTCTGAGCAAGGGTGAGGCCG
GTGCGATTTGGCTGCACGCTTGAACAACAAACATAGAAAGCCATAGCAGG
CTCTTCGGGGTACAGTAGTTTATTCGGTCAGCACGCAGTTCACAAGAGGC
GCGTCGATACTAACCTGTTCTTTCCGTGTAGAGGTGCTCTCATCAAACAC
AGATCGTCCGATGTCGCAGGTATCACTGCTCGGTCACGCACACTACCCAT
CGATTCCGACGATCACCGCCACTTTGTTTGCCTTCCACCTTGTCTAATGG
CCCCGCGTGCCTTTCTTTGTGCCCGCCGCGGCTTTATTCAGACGATTTAC
GAAAGTCAGACATCCTCAACACCCTCGTGGTGGAGGTCGGTTCGATGCGC
GACGACCTGGAGATGGCGAACGGCAAGCTCGACGACGTCCTGTCGCTACT
TTCTGGCATTACCGGGACCAAACAACCCGGCGAGCTCTTCGTGCAGCAGC
ACCAGGGCATGCGCGGAGACGACGATCGCGTCATCGGCCGCGGCTGTAGC
AATAAGTCTACCTCCGTGCGTGGCCGTTTCGGGCGATGGGGCGCAGGAGT
AGGGGGTGGTGGTGACACTGACCAACGATGCCTCGGCGCGTACGCGCATG
GCGAACAGCTGGACGGTAGCAGCGCGCCGCGGTTTCATACCGACCAGCAG
CGTCGGCAGGAGTGGCACGGCCATGAGGCATTCCCGCACTCAAGGTGGCC
CTGTCCCGCAGGGCAGTACCCGGAGGAGAACAATGAGCACAACCAGGTGG
GCGCATGACTGCAATAAAAATGTTGACCCGCTCATCCCGCGTCGGAGCTG
GAGAGAACAGGATTAGCCTAGCCCATATGCTTTTGCATGTACCCGGAGGC
GCGTCTGTTCGATGCGGTATTATATACGAGGCAAAGGGCGTAGGGGGGTC
GCCGATGGTAGAGCGAGCTTGTACGGATAGGGGAAAAGATGCATTGTTTT
CGCGGCCAGTGCCAACGTTCGCCTATTGAAGTCCTTGTTGATGGGCGGTG
CTCTGGTGTGTTGGTTCCGAAGCTTTGTCGGTCACAAGACGATGATGATG
CTGTCGTTGAATGCTCTGTAGATGTCCACCAAAGCCATTGTGTGGGGTTA
GAATCGCCACCGGCCGGTGACCCTTTGAGTTGGTCCAGGCCTGGAAATGG
ATCGTTGTAAGGTGCCGAGTGTACGTTGCCGCTATCCAGGCGATAGATGC
GAGGCAACTCCGACGACATGAGATGTTATGGTTTGATTTGACCCCGTGCC
TTATTGACCGTCCTCACCACATTCGATTCGTGTACACTTTCGTCGCTACA
CGAGTAGTTGCGTTGGCGCTGATGTGCCGTCTGTCTTGTTATGCTCTGCA
GTTCGTGGGCATAACCAGGGCTGAAGCCGGGCGCCTCTTGCTGCTTGTTG
TATCGCACGATAATCAATGGCGAACCGAGCGTCCTCTTCTTCCCTCGCCC
GATTTATCCTGCCCAGATGAGACACCACGTGGGACAACCACAACAAACAC
TGCCACCACTTGCAGCAGTGACAGCACGGTCCTCGGAGGTAGCCCCGGCC
ATGCCTTCGTATCATCTGCTGCCGCCTATGTACCGATCACAGTCAAGGCG
AGACTCCGACAACAGCCTGGGTCCGTCCGAGCATGATCGAGGCGGGGAGG
ACAGGTAGAGGGGGAGGAGACGCTTGCGGCGCTAGGCACGGCTGGGGCGG
CAACGGCAGTGTTCTGATTCCGCCGCCACGACCGAACCGCTCGGCGCGCA
GCAACATTTCCAATCGTAACGGGGTTGGATGTATCGTTCTGTCGACCCAG
CAGAAAGAATAGCAGGTTGGCTGCTCCTGTTGTTTGTCCTCCTGCGAGAA
GTTGGGGTGGTAGTGGTGGTAGTGGTGGCATGGTGTAGAGCCAAGAACGG
CAGGAGTTGTGTTGTCGGATGGAGTGACTTCGGGGCTCCAAGTAGTGTCG
AGATGGAGAAGGTCACGCATGGTACCAGCAACATTTTTTCTTGGTCCCTC
CTACCTTGAGTGAGCTCAAGACAAGCAACAACAGAAGCGGCAGCGCTATT
GTCTGCAGCAGTATCGCCTCATCCTGTTTGGATTCGAATACCGTAGACTA
TGTGTTGTATTCCCATGTACGAGAGTATTGTAGAATATCGTGTCTTCACC
CCCCCCCCCCTCCCCGTCTATGTCTTCCCGCGTTCCCTCCCACTCCCCCC
TTTATGCAGTGATATCGTCGTATGGGAGGGATGCTGGAAAGGCGGGGTGG
GGAGTTCTTTTGATGCAATCACGCACACGCGATCCGAGGGTATCCTAGTG
TCTCCCACGAACAAGGGAGCGTTGCGTGAGGTGCTGGCAACAGCCCCCTT
GGACTCGTGAGTTTGTAGGCGCCTTGCCACTGTCGCGCGATGAATGAGGG
ATTACCTGTAGTGTTTTTGAAGAGATAATGGACGGAGGGAAGGCGGACAA
CGGCCAGAGCACGCTAGCAACGAGAAGTGTTTTTGTTGGGCGACCGAGTG
TGTTTGGTGGTGCCGGTGGTTTCGAACAGCCATGTGGATGGCAGAGGGAT
AGCTTTGGGGAGGAAATTTGAACGTGTGCGTTCCCGGGGATGGAGTTTGC
ATCTTGTCCGGGGGAGCGGAAATCCCTCACAACAGGCAAGGCTCAATGTC
GGCGGTGAAGCCTCGAAGGTAAAACATCTTCGTATGTAGCGATACAGTAG
GGGGAGAATGGCGTGCGTTCTTGTGTTATGCATGCTACGAAGCTACGTCA
GTTTAATTATGCGTTCTCTGACTCCGACGTGAACTTCGTATTGTTGGTGT
TGACTTTGGGGTAATGTGCCGCGAGACTCTACGTTTCATGCTTTAAACTG
TTAATTGTGTTTTTGTCGGGAACGGACCAAGGATCGTTGGCAAGTTGGCA
AGGATAAGCGTCGTCAACTCGGCTCCGACGTAGAATTGATATCAAATGGC
ACTCTCATTTCTAGGTCCACTCTCCAAGAAGGACAGAAGAGCAATGCTAC
GGTAGGGGGGGTTCTTTCTGTCGTTACATCTTGTTGCGCGAATTTACTGA
CTGCCCGTAACTCTCAATTTTTGCTTCTCAAGAAAAAAAGTTCTGGACAG
GCAGCGGCTTGTGTGTGTATGGTGCAGTATGCAAAACAAGCATGTTTCTT
AGTGCAGAGGGAAGAGGGACTACTCCGCCAACAACCTATTTACAGTCATG
GAGGGTTTACCCCCACGTAGCATGGTTCGGAAGGCTACTGGGGGAGAAGT
ACAGTAAACAGCTCTTGTGGCTTTCAGAACATGAAAGAATTCGAGCTCGT
GTTCTACTTTTCAACGAGGAATATGTCATCCTCCAACGTTCTGGGCGTAC
GCAAGATGTACAGTATGGTTGCCCCGTCAGAGAACCCCGTGTACTATCTG
ACAAAGGCCTATGAAGTTTTTGTTTCCTGTGTCTCGGGTAGCACTTTCCA
AAAGTCATCTCTGAGTTGCATGAGAAGCAGAACTTGCTCTGTTGGGTAGT
TATGTCGTTGCCGGGGTAGTTCTGGGGCGTGTTACAAAAACAAAAAGCTG
TAATGTTTTTCCTGTTTGTGAACAAGCGAACTTTGAGTATTCCCCGCACA
CCTTCGGATTCGTGATGACTTTTTGCTATGATAATTGATCATCTGTTGCG
TGTGCTTGTCGTGGTGCGAAAATGGTTGAAATTTTGTCCTGTGTGGAAAA
AGAACGAGGCATCTTACACTTCTACAAGGGCTTGGGAAAGTTGGTTGAAA
TGTATAGACTACAGAGTAGCAGAGCTAACCTTTCTTTCGGGCAAAGATTG
ATATGTCTCGATCGAAAGTACGAGGATACAACGTGATTTGTAGTGTTTCA
CTGTGAAGTGAGGAATGCA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1309:3875..10893+

>mRNA_Ecto-sp13_S_contig1309.2524.1 ID=mRNA_Ecto-sp13_S_contig1309.2524.1|Name=mRNA_Ecto-sp13_S_contig1309.2524.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=882bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1309:3875..10893+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCACCCTCAGTTCCGCCAGGGTCGCAGGGATCTCCTCGTTAGCATCAA
GCGGCAGAAAGACGGCGGGCATCTGAAGCGCAAACAAGACGATTTACGAA
AGTCAGACATCCTCAACACCCTCGTGGTGGAGGTCGGTTCGATGCGCGAC
GACCTGGAGATGGCGAACGGCAAGCTCGACGACGTCCTGTCGCTACTTTC
TGGCATTACCGGGACCAAACAACCCGGCGAGCTCTTCGTGCAGCAGCACC
AGGGCATGCGCGGAGACGACGATCGCGTCATCGGCCGCGGCTGTAGCAAT
AAGTCTACCTCCGTGCGTGGCCGTTTCGGGCGATGGGGCGCAGGAGTAGG
GGGTGGTGGTGACACTGACCAACGATGCCTCGGCGCGTACGCGCATGGCG
AACAGCTGGACGGTAGCAGCGCGCCGCGGTTTCATACCGACCAGCAGCGT
CGGCAGGAGTGGCACGGCCATGAGGCATTCCCGCACTCAAGGTGGCCCTG
TCCCGCAGGGCAGTACCCGGAGGAGAACAATGAGCACAACCAGATGAGAC
ACCACGTGGGACAACCACAACAAACACTGCCACCACTTGCAGCAGTGACA
GCACGGTCCTCGGAGGTAGCCCCGGCCATGCCTTCGTATCATCTGCTGCC
GCCTATGTACCGATCACAGTCAAGGCGAGACTCCGACAACAGCCTGGGTC
CGTCCGAGCATGATCGAGGCGGGGAGGACAGTGATATCGTCGTATGGGAG
GGATGCTGGAAAGGCGGGGTGGGGAGTTCTTTTGATGCAATCACGCACAC
GCGATCCGAGGGTATCCTAGTGTCTCCCACGAACAAGGGAGCGTTGCGTG
AGGTGCTGGCAACAGCCCCCTTGGACTCGTGA
back to top