mRNA_Ecto-sp13_S_contig13086.2522.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13086.2522.1
Unique NamemRNA_Ecto-sp13_S_contig13086.2522.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13086.2522.1 vs. uniprot
Match: D7FSG4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSG4_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 2.080e-49
Identity = 101/151 (66.89%), Postives = 114/151 (75.50%), Query Frame = 1 
Query:    1 MHSSDSFSNGVQPYLEAYASRRSYSPIGDEKEDGRRRTRDGGAAELEGRQELGWRRAGGVVAIIGLFCAAVSASRSRWFAAGGTTSATDQPLQDGGSSYHGMFD-AFQK------RIPHGWTVRAWIDLAITIGSLSGSPVMELSDLNARV 432
            MHSSDSFSNGVQPYLEAYASRRSY PIGD+KEDG+R TRD GA E EG Q+LGWRRA GVVAI+GLFC+AVSAS SRW A GG TSA +QPLQD GSSYHGM D AF+K      R  HG         + +  +LS S VME+S++NARV
Sbjct:    1 MHSSDSFSNGVQPYLEAYASRRSYVPIGDKKEDGQRGTRDRGA-EREGMQQLGWRRAVGVVAIVGLFCSAVSASSSRWIAPGGGTSAPEQPLQDVGSSYHGMLDDAFEKGNLMVGRCEHGSN-------SSSRSALSVSLVMEVSNVNARV 143
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13086.2522.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FSG4_ECTSI2.080e-4966.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13086contigEcto-sp13_S_contig13086:1593..3049 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size488
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-04_000770.1
Cds size486
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462700.9319263-CDS-Ecto-sp13_S_contig13086:1592..19131681462700.9319263-CDS-Ecto-sp13_S_contig13086:1592..1913Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13086 1593..1913 +
1681462700.940583-CDS-Ecto-sp13_S_contig13086:2884..30491681462700.940583-CDS-Ecto-sp13_S_contig13086:2884..3049Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13086 2885..3049 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13086.2522.1prot_Ecto-sp13_S_contig13086.2522.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13086 1593..3049 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13086.2522.1

>prot_Ecto-sp13_S_contig13086.2522.1 ID=prot_Ecto-sp13_S_contig13086.2522.1|Name=mRNA_Ecto-sp13_S_contig13086.2522.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=162bp
MHSSDSFSNGVQPYLEAYASRRSYSPIGDEKEDGRRRTRDGGAAELEGRQ
ELGWRRAGGVVAIIGLFCAAVSASRSRWFAAGGTTSATDQPLQDGGSSYH
GMFDAFQKRIPHGWTVRAWIDLAITIGSLSGSPVMELSDLNARVWTRAHS
WLVTHVRSPPFG
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mRNA from alignment at Ecto-sp13_S_contig13086:1593..3049+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13086.2522.1 ID=mRNA_Ecto-sp13_S_contig13086.2522.1|Name=mRNA_Ecto-sp13_S_contig13086.2522.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1457bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13086:1593..3049+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCACAGCAGCGACAGCTTTAGCAACGGGGTGCAGCCTTACCTCGAGGC
TTACGCGTCGAGGAGGAGCTATTCCCCGATCGGGGACGAGAAGGAGGATG
GGCGGAGGAGGACAAGGGACGGCGGCGCAGCAGAGCTGGAAGGGAGGCAG
GAGCTGGGCTGGAGAAGGGCTGGGGGAGTAGTCGCGATTATTGGCTTATT
CTGCGCCGCGGTCTCGGCGTCGAGGTCGAGGTGGTTCGCCGCCGGCGGCA
CGACGTCCGCTACCGATCAGCCGCTGCAGGACGGGGGAAGCTCTTACCAC
GGCATGTTCGATGCCTTTCAGGTGAGGGTGCCTGCCATGGCACGAATTCG
TGACGATAGGTTTTTGAGCACCTTACACACCAGCCAACCCACATCAGGCA
GATGATGAGGATACCTCGAAAACAGCGGTCCTTCAGGCCTAGAGGAGATA
TTGAGATGTTGGCCTACCCGTCGCGTCGAGGCTGCTGCCCAGCTGTGGGA
TTGCCCCATGACCTAGGTCGCCCGTCATGTCTCTTTTCTAAGCCACGCCT
GGGCAACGTGCTGAAGTCGGGAAGATGTGCGGTGCGTTTTCTTCTGAAAG
GTTCAGCGACGGCTCTGTTTTCTGCCGTGACCGAGCATACACGGGAGCTG
TCTGTTGACACCTCTACATCAGTAGTGGTTGCTTGGTGACAACATAGGTT
GGCGCAGAAGACCTCAATCAAGCCTCCCTGAAAGCGGTTGTTAAAAGGAA
GGTTGTGGGCAGCATCCGCAACTGCTGTGCCGGTTGGTGGCTTTTTCACG
GACGAACAGAACTACCTTACAGTACCAGCACTCTTATCTTCACCCTCGTG
CACGTTCCCACACGCTGTTGCGCTGGATCCGTGCTCGACGGCTCCCCTTG
CGCTACTCTCTCTCAACCGTTTGGGATTGGAAACAAATTGCACACGGGTA
TCCATGAGACGCAAGTGAGTACATTATGTACTCGCTGTAAGAGCCTCCAC
CGTTTCAGTTCGAAGTAATCCGTGATGACGTAGGTATTTTCAACTGATTT
CTTTCGTGACTGTTTTTGACAGAAGTGGCTAATTACGATGTCGGCCTTTT
AGGGATTTAGTCCCTAAAACATGCAACGGATAGATGTATTAATGCATTGC
ATCAGTGGGTCGCTGAATCTCAGGTCAAAGCTGCTGCTGCTGCTGTGCAC
ACAAACGCTCCCGGCAGAGTCCACAAGCACTCCCCTCCTGTGAAAGTCAT
GCTGTTGTTTTCTCCTCTCCGTGCTGGGCCAACCATCAACAGAAAAGGAT
ACCCCATGGTTGGACGGTGCGAGCATGGATCGATCTCGCCATCACGATCG
GCTCTCTTTCTGGCTCTCCTGTGATGGAATTATCCGACCTAAATGCACGT
GTATGGACTCGAGCTCACTCGTGGCTTGTGACACATGTTCGGAGTCCACC
GTTTGGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13086:1593..3049+

>mRNA_Ecto-sp13_S_contig13086.2522.1 ID=mRNA_Ecto-sp13_S_contig13086.2522.1|Name=mRNA_Ecto-sp13_S_contig13086.2522.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=486bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13086:1593..3049+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCACAGCAGCGACAGCTTTAGCAACGGGGTGCAGCCTTACCTCGAGGC
TTACGCGTCGAGGAGGAGCTATTCCCCGATCGGGGACGAGAAGGAGGATG
GGCGGAGGAGGACAAGGGACGGCGGCGCAGCAGAGCTGGAAGGGAGGCAG
GAGCTGGGCTGGAGAAGGGCTGGGGGAGTAGTCGCGATTATTGGCTTATT
CTGCGCCGCGGTCTCGGCGTCGAGGTCGAGGTGGTTCGCCGCCGGCGGCA
CGACGTCCGCTACCGATCAGCCGCTGCAGGACGGGGGAAGCTCTTACCAC
GGCATGTTCGATGCCTTTCAGAAAAGGATACCCCATGGTTGGACGGTGCG
AGCATGGATCGATCTCGCCATCACGATCGGCTCTCTTTCTGGCTCTCCTG
TGATGGAATTATCCGACCTAAATGCACGTGTATGGACTCGAGCTCACTCG
TGGCTTGTGACACATGTTCGGAGTCCACCGTTTGGA
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