mRNA_Ecto-sp13_S_contig13079.2518.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13079.2518.1
Unique NamemRNA_Ecto-sp13_S_contig13079.2518.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13079.2518.1 vs. uniprot
Match: A0A6H5K5I6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5I6_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 2.020e-12
Identity = 43/97 (44.33%), Postives = 57/97 (58.76%), Query Frame = 1 
Query:    1 NCITSADSVHLARILEILRWFDD*KCDLEL----FAHGDD-SLEDAFLTRETWFDMRLSILGFVSMCRHIFADESLVQ----KGNRRRTVFPRDASQ 264
             CI S +S  + R+LEIL +FDD +  LE        GD    +  F+T ++WFD+RLSILGFVSMCR++F D    Q      N RR + PR+ SQ
Sbjct:   83 GCIRSFESAPMDRLLEILEFFDDWQSTLERKHIPSGEGDKLGWKKHFITHQSWFDLRLSILGFVSMCRYLFEDPERFQIDSLSPNCRRFLSPRNCSQ 179
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BLAST of mRNA_Ecto-sp13_S_contig13079.2518.1 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 1.300e-7
Identity = 30/77 (38.96%), Postives = 49/77 (63.64%), Query Frame = 1 
Query:    7 ITSADSVHLARILEILRWFDD*KCDL-ELFAHGDDSLEDAFLTRETWFDMRLSILGFVSMCRHIFADESLVQKGNRR 234
            I+SAD   L  ++ ++R+FD  +  L E    GD++ +  F+T  +W D+R+ ILGFVSMCR++F ++S  +   RR
Sbjct:  570 ISSADDSKLEELINMVRFFDKWRSSLQEKTTMGDETWKKHFITEFSWTDIRVCILGFVSMCRYLFEEDSRFKVSPRR 646
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BLAST of mRNA_Ecto-sp13_S_contig13079.2518.1 vs. uniprot
Match: A0A6H5JRH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRH8_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 5.370e-6
Identity = 28/69 (40.58%), Postives = 43/69 (62.32%), Query Frame = 1 
Query:    7 ITSADSVHLARILEILRWFDD*KCDLELFAH-GDDSLEDAFLTRETWFDMRLSILGFVSMCRHIFADES 210
            I SAD   L  +++IL  FD+ +  LE     GD + +  F+T  +W D+R+ ILG VSMCR++F ++S
Sbjct:  447 IRSADDSKLEEVMDILLLFDEWRASLEARPTLGDGAWKAHFITDHSWTDIRVCILGTVSMCRYVFEEDS 515
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13079.2518.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K5I6_9PHAE2.020e-1244.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JR14_9PHAE1.300e-738.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRH8_9PHAE5.370e-640.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13079contigEcto-sp13_S_contig13079:4..529 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size402
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-11_002120.1
Cds size276
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462700.6041-UTR-Ecto-sp13_S_contig13079:3..671681462700.6041-UTR-Ecto-sp13_S_contig13079:3..67Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13079 4..67 +
1681462700.6292808-UTR-Ecto-sp13_S_contig13079:467..5291681462700.6292808-UTR-Ecto-sp13_S_contig13079:467..529Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13079 468..529 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462700.6130495-CDS-Ecto-sp13_S_contig13079:67..3171681462700.6130495-CDS-Ecto-sp13_S_contig13079:67..317Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13079 68..317 +
1681462700.6211867-CDS-Ecto-sp13_S_contig13079:441..4671681462700.6211867-CDS-Ecto-sp13_S_contig13079:441..467Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13079 442..467 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13079.2518.1prot_Ecto-sp13_S_contig13079.2518.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13079 68..467 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13079.2518.1

>prot_Ecto-sp13_S_contig13079.2518.1 ID=prot_Ecto-sp13_S_contig13079.2518.1|Name=mRNA_Ecto-sp13_S_contig13079.2518.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=92bp
MTESVTWSFLLTEMIASKTRFSRERLGSTCGYRFWVSFPCVAIYSRTNRL
CKRATVDEPSSLEMLARQDSGANAGLLTRRILVRSLRTQIW*
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mRNA from alignment at Ecto-sp13_S_contig13079:4..529+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13079.2518.1 ID=mRNA_Ecto-sp13_S_contig13079.2518.1|Name=mRNA_Ecto-sp13_S_contig13079.2518.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=526bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13079:4..529+ (Ectocarpus species13 EcNAP12_S_4_19m)
AATTGCATCACTTCCGCTGACAGCGTTCACCTCGCCCGTATCCTAGAGAT
TCTTCGATGGTTCGATGACTGAAAGTGTGACTTGGAGCTTTTTGCTCACG
GAGATGATAGCCTCGAAGACGCGTTTCTCACGAGAGAGACTTGGTTCGAC
ATGCGGCTATCGATTCTGGGTTTCGTTTCCATGTGTCGCCATATATTCGC
GGACGAATCGCTTGTGCAAAAGGGCAACCGTCGACGAACCGTCTTCCCTC
GAGATGCTAGCCAGGCAAGACTCGGGAGCAAACGCAGGGTTGCTGACCAG
GCGGATACTTGTACGTTTTTTGTTGTTAACTCTGTGTTGAATAGTTAATA
CATCTCGAGCATTCATCCCCAGTGCCCTCAACCTCCACTCTCCCTATACC
CCAAACCCCTTTCCCCTTTTCGTACCCTTCGCCGTTAGGATCTTTGCGAA
CACAGATTTGGTAACATTCGTGCCAGCCAGGGGAACCACAAGAACCCCAA
GAAGGAGCAAGCGTATTTTGCTGGGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13079:4..529+

>mRNA_Ecto-sp13_S_contig13079.2518.1 ID=mRNA_Ecto-sp13_S_contig13079.2518.1|Name=mRNA_Ecto-sp13_S_contig13079.2518.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=276bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13079:4..529+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACTGAAAGTGTGACTTGGAGCTTTTTGCTCACGGAGATGATAGCCTC
GAAGACGCGTTTCTCACGAGAGAGACTTGGTTCGACATGCGGCTATCGAT
TCTGGGTTTCGTTTCCATGTGTCGCCATATATTCGCGGACGAATCGCTTG
TGCAAAAGGGCAACCGTCGACGAACCGTCTTCCCTCGAGATGCTAGCCAG
GCAAGACTCGGGAGCAAACGCAGGGTTGCTGACCAGGCGGATACTTGTAC
GATCTTTGCGAACACAGATTTGGTAA
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