prot_Ecto-sp13_S_contig13071.2514.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig13071.2514.1
Unique Nameprot_Ecto-sp13_S_contig13071.2514.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length210
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13071.2514.1 vs. uniprot
Match: A0A6H5LI51_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LI51_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 1.020e-27
Identity = 60/64 (93.75%), Postives = 61/64 (95.31%), Query Frame = 0 
Query:    2 IGAEHLDLVDVIIRRAMVCDNQAKHEEARRLYERSLDISEKNLGASHPAIAGVLNYMAESLLRQ 65
            IGAEHLDLVDVIIRRA VCDNQAKHEEARRLY RSL+ISEKNLGASHPAIAGVLN MAESLLRQ
Sbjct:  164 IGAEHLDLVDVIIRRARVCDNQAKHEEARRLYGRSLEISEKNLGASHPAIAGVLNDMAESLLRQ 227
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13071.2514.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LI51_9PHAE1.020e-2793.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 95..128
e-value: 97.0
score: 6.3
coord: 10..43
e-value: 0.74
score: 18.9
coord: 137..170
e-value: 13.0
score: 14.1
NoneNo IPR availablePFAMPF13424TPR_12coord: 95..168
e-value: 2.5E-11
score: 43.7
coord: 14..84
e-value: 4.2E-10
score: 39.8
NoneNo IPR availablePANTHERPTHR45783:SF3KINESIN LIGHT CHAINcoord: 2..82
NoneNo IPR availablePANTHERPTHR45783FAMILY NOT NAMEDcoord: 2..82
NoneNo IPR availablePANTHERPTHR45783FAMILY NOT NAMEDcoord: 72..183
NoneNo IPR availablePANTHERPTHR45783:SF3KINESIN LIGHT CHAINcoord: 72..183
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..198
e-value: 1.8E-40
score: 140.8
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 6..73
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 72..190

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13071contigEcto-sp13_S_contig13071:394..3885 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13071.2514.1mRNA_Ecto-sp13_S_contig13071.2514.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig13071 334..4659 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig13071.2514.1 ID=prot_Ecto-sp13_S_contig13071.2514.1|Name=mRNA_Ecto-sp13_S_contig13071.2514.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=210bp
MIGAEHLDLVDVIIRRAMVCDNQAKHEEARRLYERSLDISEKNLGASHPA
IAGVLNYMAESLLRQGKKGVAAELLYVRALDILRASVGEEHPYFARLLRG
QAFSVMGQDKFEKAETLFKRLVSMSETKHGLDHAAVAADLNNLAEVLKKQ
GKGSEAEPLYARAIAIWTKGKGHHDRTFVTSLNYRAELSEKQMQPRSHIP
PHPLLGGCG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom_sf