prot_Ecto-sp13_S_contig1307.2513.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1307.2513.1
Unique Nameprot_Ecto-sp13_S_contig1307.2513.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length165
Homology
BLAST of mRNA_Ecto-sp13_S_contig1307.2513.1 vs. uniprot
Match: A0A6H5J8A4_9PHAE (AAA_12 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8A4_9PHAE)

HSP 1 Score: 270 bits (690), Expect = 7.230e-84
Identity = 154/199 (77.39%), Postives = 157/199 (78.89%), Query Frame = 0
Query:    1 PCFPPFLLVDVSSGSERRAGSSYQNPREASFVSAFLARLVASGMRSGRG----------------------SGVVRVGVITPYRGQVHCIQQELSGGGGGRRLKGGV---------STVDGFQGKEVDVVLFSCVRAPSYGGGXXXG---IGFLADQRRMNVALTRARRSLIVLGNVGRLSSDGTWKALVDHSKSCERL 165
            PCFPPFLLVDVSSGSERRAGSSYQNPREASFVSAFLARLVASG+RSGRG                      SGVVRVG+ITPYRGQVHCIQQELSGGGGGRRLKGGV         STVDGFQGKEVDVVLFSCVRAPS G  XXX    IGFLADQRRMNVALTRAR SLI+LGNVGRLSSD TW ALVDHSKS ERL
Sbjct:   54 PCFPPFLLVDVSSGSERRAGSSYQNPREASFVSAFLARLVASGLRSGRGVKAGGXXXXXXXXXXXXRDREKSGVVRVGIITPYRGQVHCIQQELSGGGGGRRLKGGVEDGGVDAEVSTVDGFQGKEVDVVLFSCVRAPSSGXXXXXXXXXIGFLADQRRMNVALTRARCSLIILGNVGRLSSDATWNALVDHSKSRERL 252          
BLAST of mRNA_Ecto-sp13_S_contig1307.2513.1 vs. uniprot
Match: D8LLI3_ECTSI (Presumed helicase required for RNA polymerase II transcription termination and processing of RNAs n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLI3_ECTSI)

HSP 1 Score: 264 bits (674), Expect = 4.740e-79
Identity = 152/198 (76.77%), Postives = 155/198 (78.28%), Query Frame = 0
Query:    1 PCFPPFLLVDVSSGSERRAGSSYQNPREASFVSAFLARLVASGMRSGRG---------------------SGVVRVGVITPYRGQVHCIQQELSGGGGGR---RLKGGV---------STVDGFQGKEVDVVLFSCVRAPSYGGGXXXGIGFLADQRRMNVALTRARRSLIVLGNVGRLSSDGTWKALVDHSKSCERL 165
            PCFPPFLLVDVSSGSERRAGSSYQNPREASFVSAFLARLVASG+RSGRG                     SGVVRVGVITPYRGQVHCIQQELSG        RLKGGV         STVDGFQGKEVDVVLFSCVRAPS G  XXX IGFLADQRRMNVALTRARRSL+VLGNVGRLSSDGTWKALVDHSKS +RL
Sbjct:  530 PCFPPFLLVDVSSGSERRAGSSYQNPREASFVSAFLARLVASGLRSGRGVKAGGXXXXXXXXXXGQDREKSGVVRVGVITPYRGQVHCIQQELSGXXXXXXXXRLKGGVEDGGVDAEVSTVDGFQGKEVDVVLFSCVRAPSSGXXXXXXIGFLADQRRMNVALTRARRSLVVLGNVGRLSSDGTWKALVDHSKSRDRL 727          
BLAST of mRNA_Ecto-sp13_S_contig1307.2513.1 vs. uniprot
Match: A0A2P6VIA2_9CHLO (ATP-dependent helicase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VIA2_9CHLO)

HSP 1 Score: 124 bits (312), Expect = 5.720e-30
Identity = 80/168 (47.62%), Postives = 98/168 (58.33%), Query Frame = 0
Query:    1 PCFPPFLLVDVSSGSERR--AGSSYQNPREASFVSAFLARLVASGMRSGRGSGVVRVGVITPYRGQVHCIQQELSGGGGGRRL-KGGVSTVDGFQGKEVDVVLFSCVRAPSYGGGXXXGIGFLADQRRMNVALTRARRSLIVLGNVGRLSSDGTWKALVDHSKSCERL 165
            PCFPP    D   G ER   AGSS  N  EA    A  A L A      R  G V V V+TPY+ Q+  +++     GGG  L +   +TVDGFQG+E DVV+FSCVRA + GGG    +GFLAD RRMNVALTRARRSL ++G+   L+S   W  L+ H +   RL
Sbjct: 2386 PCFPPLAFWDCKEGRERGGGAGSSVSNAEEAEVAYALWAGLAA---HFSRDMGDV-VAVLTPYKAQLGLLRRTFQQRGGGAALDRVQFATVDGFQGREADVVIFSCVRAHAAGGGG--SVGFLADVRRMNVALTRARRSLWIVGHHDTLASCQPWLELMQHCRRQRRL 2547          
BLAST of mRNA_Ecto-sp13_S_contig1307.2513.1 vs. uniprot
Match: A0A7S1AKL9_NOCSC (Hypothetical protein (Fragment) n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1AKL9_NOCSC)

HSP 1 Score: 117 bits (292), Expect = 7.250e-30
Identity = 71/157 (45.22%), Postives = 94/157 (59.87%), Query Frame = 0
Query:    3 FPPFLLVDVSSGSERRAGSSYQNPREASFVSAFLARLVASGMRSGRGSGVVR-VGVITPYRGQVHCIQQELSGGGGGRRLKGGVSTVDGFQGKEVDVVLFSCVRAPSYGGGXXXGIGFLADQRRMNVALTRARRSLIVLGNVGRLSSDGTWKALVDH 158
            FPP L  D+ S S +RA  S++N  E    SA +A L  +       S VVR VG++TPYR Q   ++QE  GG         V TVD +QG+E +V+LFS VRAP   G    GIGFLAD+RR NVALTRA+  LIV+G+   L+ + +W+A + H
Sbjct:   27 FPPLLFFDLQS-SAQRANGSWKNALEVRMCSAIIACLKEASTEE--ESDVVRDVGILTPYRAQQDALRQEFRGGYN-------VQTVDAYQGRECEVILFSTVRAPDVSG--CQGIGFLADERRFNVALTRAKSLLIVVGHAATLAQNTSWRAFLQH 171          
BLAST of mRNA_Ecto-sp13_S_contig1307.2513.1 vs. uniprot
Match: A0A7I8LI74_SPIIN (Hypothetical protein n=2 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8LI74_SPIIN)

HSP 1 Score: 122 bits (306), Expect = 3.520e-29
Identity = 74/169 (43.79%), Postives = 100/169 (59.17%), Query Frame = 0
Query:    1 PCFPPFLLVDVSSGSERRAG--SSYQNPREASFVSAF---LARLVASGMRSGRGSGVVRVGVITPYRGQVHCIQQELS---GGGGGRRLKGGVSTVDGFQGKEVDVVLFSCVRAPSYGGGXXXGIGFLADQRRMNVALTRARRSLIVLGNVGRLSSDGTWKALVDHSKS 161
            P   P+L  D+S G E   G  +SYQN  EA F  A    L R++ +G  +   +G V VG+ITPY+ Q+ C+Q+E         G+ L   ++TVD FQG+E DV++ SCVRA  +      G+GF+AD RRMNVALTRARR+L V+GN   L     W AL+  +KS
Sbjct: 1078 PLLKPYLFFDISHGRESHRGGSASYQNLHEARFCRAIYDHLHRVLKAGSAAAAATGRVSVGIITPYKLQLRCLQREFEPVISSEQGKDLY--INTVDAFQGQERDVIIMSCVRASGH------GVGFVADVRRMNVALTRARRALWVVGNANALVQSEDWAALIADAKS 1238          
BLAST of mRNA_Ecto-sp13_S_contig1307.2513.1 vs. uniprot
Match: A0A4D9A8N9_SALSN (Senataxin n=1 Tax=Salvia splendens TaxID=180675 RepID=A0A4D9A8N9_SALSN)

HSP 1 Score: 122 bits (306), Expect = 3.530e-29
Identity = 75/166 (45.18%), Postives = 100/166 (60.24%), Query Frame = 0
Query:    1 PCFPPFLLVDVSSGSERRAGSS--YQNPREASFVSAFLARLVASGMRSGRGSGVVRVGVITPYRGQVHCIQQELS---GGGGGRRLKGGVSTVDGFQGKEVDVVLFSCVRAPSYGGGXXXGIGFLADQRRMNVALTRARRSLIVLGNVGRLSSDGTWKALVDHSKS 161
            P   P++  D+S G E   GSS  YQN +EA F       L  S ++S  G G V VG+ITPY+ Q+ C+Q+E         G+ +   ++TVD FQG+E DV++ SCVRA S+      G+GF+AD RRMNVALTRARR+L V+GN   L     W AL+D SK+
Sbjct: 1097 PLLRPYIFFDISHGRESHRGSSVSYQNTQEAQFCIRLYEHLQKS-VKS-LGIGKVSVGIITPYKLQLKCLQREFKDVLNSDEGKDIY--INTVDAFQGQERDVIIMSCVRASSH------GVGFVADIRRMNVALTRARRALWVMGNANALVQSDDWAALIDDSKA 1252          
BLAST of mRNA_Ecto-sp13_S_contig1307.2513.1 vs. uniprot
Match: A0A2K1IXN6_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1IXN6_PHYPA)

HSP 1 Score: 122 bits (305), Expect = 4.660e-29
Identity = 76/166 (45.78%), Postives = 98/166 (59.04%), Query Frame = 0
Query:    1 PCFPPFLLVDVSSGSERRAGS-SYQNPREASFVSAFLARLVASGMRSGRGSGV---VRVGVITPYRGQVHCIQQELSGGGGGRRLKGGV--STVDGFQGKEVDVVLFSCVRAPSYGGGXXXGIGFLADQRRMNVALTRARRSLIVLGNVGRLSSDGTWKALVDHSK 160
            P   P+L  D+S G E  AGS SYQN  EA  V+  L + +   +    G G    V VG+ITPY+ Q+ C+++E     G      GV  +TVD FQG+E DV++ SCVRA SY      G+GF+AD RRMNVALTRARRSL V+GN   L+    W AL+  +K
Sbjct:  684 PLLQPYLFFDISLGRESHAGSVSYQNKMEAQ-VAVHLYQHLQKTLADEAGGGPPANVSVGIITPYKQQLQCLEKEFVALIGSNAASNGVYINTVDAFQGQERDVIMMSCVRASSY------GVGFVADIRRMNVALTRARRSLWVIGNASALAQSEDWAALLADAK 842          
BLAST of mRNA_Ecto-sp13_S_contig1307.2513.1 vs. uniprot
Match: A0A7I4BMU9_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4BMU9_PHYPA)

HSP 1 Score: 122 bits (305), Expect = 4.850e-29
Identity = 76/166 (45.78%), Postives = 98/166 (59.04%), Query Frame = 0
Query:    1 PCFPPFLLVDVSSGSERRAGS-SYQNPREASFVSAFLARLVASGMRSGRGSGV---VRVGVITPYRGQVHCIQQELSGGGGGRRLKGGV--STVDGFQGKEVDVVLFSCVRAPSYGGGXXXGIGFLADQRRMNVALTRARRSLIVLGNVGRLSSDGTWKALVDHSK 160
            P   P+L  D+S G E  AGS SYQN  EA  V+  L + +   +    G G    V VG+ITPY+ Q+ C+++E     G      GV  +TVD FQG+E DV++ SCVRA SY      G+GF+AD RRMNVALTRARRSL V+GN   L+    W AL+  +K
Sbjct: 1225 PLLQPYLFFDISLGRESHAGSVSYQNKMEAQ-VAVHLYQHLQKTLADEAGGGPPANVSVGIITPYKQQLQCLEKEFVALIGSNAASNGVYINTVDAFQGQERDVIMMSCVRASSY------GVGFVADIRRMNVALTRARRSLWVIGNASALAQSEDWAALLADAK 1383          
BLAST of mRNA_Ecto-sp13_S_contig1307.2513.1 vs. uniprot
Match: A0A4D9B9J8_SALSN (Senataxin n=1 Tax=Salvia splendens TaxID=180675 RepID=A0A4D9B9J8_SALSN)

HSP 1 Score: 120 bits (301), Expect = 1.670e-28
Identity = 74/166 (44.58%), Postives = 99/166 (59.64%), Query Frame = 0
Query:    1 PCFPPFLLVDVSSGSERRAGSS--YQNPREASFVSAFLARLVASGMRSGRGSGVVRVGVITPYRGQVHCIQQELS---GGGGGRRLKGGVSTVDGFQGKEVDVVLFSCVRAPSYGGGXXXGIGFLADQRRMNVALTRARRSLIVLGNVGRLSSDGTWKALVDHSKS 161
            P   P++  D+S G E   GSS  YQN +EA F       L  S ++S  G G V VG+ITPY+ Q+ C+Q+E         G+ +   ++TVD FQG+E DV++ SCVRA S+      G+GF+AD RRMNVALTRARR+L V+GN   L     W  L+D SK+
Sbjct: 1112 PLLRPYIFFDISHGRESHRGSSVSYQNTQEAQFCVRLYEHLQKS-IKS-LGIGKVSVGIITPYKLQLKCLQREFKDVLNSDEGKDIY--INTVDAFQGQERDVIIMSCVRASSH------GVGFVADIRRMNVALTRARRALWVMGNANALVQSDDWAELIDDSKA 1267          
BLAST of mRNA_Ecto-sp13_S_contig1307.2513.1 vs. uniprot
Match: UPI00053C221B (uncharacterized ATP-dependent helicase C29A10.10c-like isoform X1 n=2 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C221B)

HSP 1 Score: 120 bits (300), Expect = 2.260e-28
Identity = 71/164 (43.29%), Postives = 99/164 (60.37%), Query Frame = 0
Query:    1 PCFPPFLLVDVSSGSERRAGSS--YQNPREASFVSAFLARLVASGMRSGRGSGVVRVGVITPYRGQVHCIQQELSGGGGGRRLKG-GVSTVDGFQGKEVDVVLFSCVRAPSYGGGXXXGIGFLADQRRMNVALTRARRSLIVLGNVGRLSSDGTWKALVDHSKS 161
            P   P+L  D+S G E   G S  Y+N  EA F       L  + ++S  G+G V VG+ITPY+ Q+ C++QE     G   +K   ++TVD FQG+E DV++ SCVRA S+      G+GF+AD RRMNVALTRARR+L ++GN   L     W AL++ ++S
Sbjct: 1076 PILRPYLFFDISHGRESHRGGSVSYENVDEARFCIGLYMHLQKT-LKS-MGAGKVSVGIITPYKLQLKCLRQEFGNALGQEEMKELYINTVDAFQGQERDVIIMSCVRASSH------GVGFVADIRRMNVALTRARRALWIMGNAAALVKSEDWGALINDARS 1231          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1307.2513.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J8A4_9PHAE7.230e-8477.39AAA_12 domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LLI3_ECTSI4.740e-7976.77Presumed helicase required for RNA polymerase II t... [more]
A0A2P6VIA2_9CHLO5.720e-3047.62ATP-dependent helicase n=1 Tax=Micractinium conduc... [more]
A0A7S1AKL9_NOCSC7.250e-3045.22Hypothetical protein (Fragment) n=1 Tax=Noctiluca ... [more]
A0A7I8LI74_SPIIN3.520e-2943.79Hypothetical protein n=2 Tax=Spirodela intermedia ... [more]
A0A4D9A8N9_SALSN3.530e-2945.18Senataxin n=1 Tax=Salvia splendens TaxID=180675 Re... [more]
A0A2K1IXN6_PHYPA4.660e-2945.78Uncharacterized protein n=2 Tax=Physcomitrium pate... [more]
A0A7I4BMU9_PHYPA4.850e-2945.78Uncharacterized protein n=2 Tax=Physcomitrium pate... [more]
A0A4D9B9J8_SALSN1.670e-2844.58Senataxin n=1 Tax=Salvia splendens TaxID=180675 Re... [more]
UPI00053C221B2.260e-2843.29uncharacterized ATP-dependent helicase C29A10.10c-... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR041679DNA2/NAM7 helicase-like, AAA domainPFAMPF13087AAA_12coord: 4..142
e-value: 1.4E-36
score: 126.0
NoneNo IPR availableGENE3D3.40.50.300coord: 2..165
e-value: 9.0E-42
score: 144.7
NoneNo IPR availablePANTHERPTHR10887:SF382HELICASE SENATAXIN-RELATEDcoord: 7..162
NoneNo IPR availablePANTHERPTHR10887DNA2/NAM7 HELICASE FAMILYcoord: 7..162
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 9..152

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1307contigEcto-sp13_S_contig1307:15155..16226 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1307.2513.1mRNA_Ecto-sp13_S_contig1307.2513.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1307 15155..16226 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1307.2513.1 ID=prot_Ecto-sp13_S_contig1307.2513.1|Name=mRNA_Ecto-sp13_S_contig1307.2513.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=165bp
PCFPPFLLVDVSSGSERRAGSSYQNPREASFVSAFLARLVASGMRSGRGS
GVVRVGVITPYRGQVHCIQQELSGGGGGRRLKGGVSTVDGFQGKEVDVVL
FSCVRAPSYGGGGGGGIGFLADQRRMNVALTRARRSLIVLGNVGRLSSDG
TWKALVDHSKSCERL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR041679DNA2/NAM7-like_AAA
IPR027417P-loop_NTPase