mRNA_Ecto-sp13_S_contig1306.2506.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1306.2506.1
Unique NamemRNA_Ecto-sp13_S_contig1306.2506.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1306.2506.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1306contigEcto-sp13_S_contig1306:16518..17037 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size520
Hectar predicted targeting categoryother localisation
Exons1
Cds size321
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462699.5732517-CDS-Ecto-sp13_S_contig1306:16517..168381681462699.5732517-CDS-Ecto-sp13_S_contig1306:16517..16838Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1306 16518..16838 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462699.5837903-UTR-Ecto-sp13_S_contig1306:16838..170371681462699.5837903-UTR-Ecto-sp13_S_contig1306:16838..17037Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1306 16839..17037 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1306.2506.1prot_Ecto-sp13_S_contig1306.2506.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1306 16518..16838 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1306.2506.1

>prot_Ecto-sp13_S_contig1306.2506.1 ID=prot_Ecto-sp13_S_contig1306.2506.1|Name=mRNA_Ecto-sp13_S_contig1306.2506.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=107bp
MAALSTPLLTIDFHVALTARHLRNDQHPSKCSTKIWYCDTLTRMTIVTKK
VEVLGQSTKRLSLLPTGEISLYAVWETVDIQVAFRSRMGFIAYLSSTYFY
RDGFVV*
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mRNA from alignment at Ecto-sp13_S_contig1306:16518..17037+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1306.2506.1 ID=mRNA_Ecto-sp13_S_contig1306.2506.1|Name=mRNA_Ecto-sp13_S_contig1306.2506.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=520bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1306:16518..17037+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTGCCCTTAGCACACCTCTCCTAACCATAGATTTTCATGTGGCGCT
CACGGCGAGGCATCTGCGCAACGATCAGCACCCAAGTAAGTGCAGCACCA
AAATATGGTACTGTGACACCCTCACGAGGATGACGATTGTGACAAAAAAA
GTGGAGGTCTTGGGCCAAAGTACAAAAAGGTTGAGCCTGTTACCCACAGG
GGAGATATCGCTGTATGCTGTCTGGGAAACCGTAGACATACAGGTAGCTT
TTCGCTCACGCATGGGATTCATTGCTTATCTATCTTCGACTTATTTCTAT
AGAGATGGATTTGTTGTGTGATATTAAGAAAGAAAAAAAAAGCATGGCAC
TCCGTCAGGTTCGAAACGAAAGCTCCATCAGGCAAGGGCAAAATTTCAAA
ATTTCAAATTTGTCGGGAAGACCTGAAGCACACGTAGTAAGGAGGAGGTC
GAGAGTTCGATCCCTGCCAGACATTTTTTTTTTCCCCAAAAAGTACTTCA
TACTCCAGGAGTACATTTAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1306:16518..17037+

>mRNA_Ecto-sp13_S_contig1306.2506.1 ID=mRNA_Ecto-sp13_S_contig1306.2506.1|Name=mRNA_Ecto-sp13_S_contig1306.2506.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=321bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1306:16518..17037+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTGCCCTTAGCACACCTCTCCTAACCATAGATTTTCATGTGGCGCT
CACGGCGAGGCATCTGCGCAACGATCAGCACCCAAGTAAGTGCAGCACCA
AAATATGGTACTGTGACACCCTCACGAGGATGACGATTGTGACAAAAAAA
GTGGAGGTCTTGGGCCAAAGTACAAAAAGGTTGAGCCTGTTACCCACAGG
GGAGATATCGCTGTATGCTGTCTGGGAAACCGTAGACATACAGGTAGCTT
TTCGCTCACGCATGGGATTCATTGCTTATCTATCTTCGACTTATTTCTAT
AGAGATGGATTTGTTGTGTGA
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