mRNA_Ecto-sp13_S_contig1305.2502.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1305.2502.1
Unique NamemRNA_Ecto-sp13_S_contig1305.2502.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1305.2502.1 vs. uniprot
Match: D8LJ78_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ78_ECTSI)

HSP 1 Score: 525 bits (1352), Expect = 1.480e-183
Identity = 293/340 (86.18%), Postives = 301/340 (88.53%), Query Frame = 1 
Query:  112 MEAGACSNPEDVQPATKKAAQKLTNFRGYLHKSSVAGCFVDLLEMTNEGVMTEAGLYPSSRYKQSRNMRQSGLGSSSRSRPPTGLNGPNKNDKSQAPLQGPSNDQVEDQSKNQRQHRGHHRRRPSTALGTPSAPLAAQATRDAPLSARVGLSAGNSFAEAAGARILSASSP-CHNNNKSEDIAGSRATTLDIRRTQWVEGDSKQGVGGWLETDTAGQSQQHQGQREGAVSATGPETDDDAEEGEXXXXXXXXXXXXXXXXXXXXCNTXXXXXXSTADSPKPFSRRVAWGKAMRELSSSVTKVAHMKSAADRAMINSSHERRARAASVRAGLIEGELLRAQ 1128
            MEAGACSNPEDVQPATKKAAQKLTNFRGYLHKSSVAGCFVDLL+MT+EGVMTEAGLYPSSRYKQSRNMRQSGLG+SSRSRPPTGLNGPNKNDKSQAPLQGPSN+Q EDQ KNQRQ RGHH RRPSTAL T SAPLAAQ TRDAPLSARVGLSAGNSFAEAAG+RILSASSP CHNNNKSEDIAGSRAT LDIRRTQWVEG SKQGVGGWLE DTAGQSQQHQGQ  GAVSATGPET+DDAEEGE                    CNT      STADSPKPFSRRVAWGKAMRELSSSVTKVAHMK+AADRAMINSSH+RRARAASVRAGLIEGELLRAQ
Sbjct:    1 MEAGACSNPEDVQPATKKAAQKLTNFRGYLHKSSVAGCFVDLLQMTDEGVMTEAGLYPSSRYKQSRNMRQSGLGTSSRSRPPTGLNGPNKNDKSQAPLQGPSNNQAEDQRKNQRQPRGHHGRRPSTALETHSAPLAAQLTRDAPLSARVGLSAGNSFAEAAGSRILSASSPSCHNNNKSEDIAGSRATILDIRRTQWVEGGSKQGVGGWLEADTAGQSQQHQGQLVGAVSATGPETNDDAEEGEKEGRNGGGHDENGGDHPGGRCNTSSTTSTSTADSPKPFSRRVAWGKAMRELSSSVTKVAHMKTAADRAMINSSHDRRARAASVRAGLIEGELLRAQ 340
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BLAST of mRNA_Ecto-sp13_S_contig1305.2502.1 vs. uniprot
Match: A0A6H5JK95_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK95_9PHAE)

HSP 1 Score: 470 bits (1209), Expect = 1.040e-155
Identity = 287/347 (82.71%), Postives = 294/347 (84.73%), Query Frame = 1 
Query:   94 MKRFQSMEAGACSNPEDVQPATKKAAQKLTNFRGYLHKSSVAGCFVDLLEMTNEGVMTEAGLYPSSRYKQSRNMRQSGLGSSSRSR--PPTGLNGPNKNDKSQAPLQGPSNDQVEDQSKNQRQHRGHHRRRPSTALGTPSAPLAAQATRDAPLSARVGLSAGNSFAEAAGARILSASSPCHNNNKSEDIAGSRATTLDIRRTQWVEGDSKQGVGGWLETDTAGQSQQHQGQREGAVSATGPETDDDAEEGEXXXXXXXXXXXXXXXXXXXXCNTXXXXXXSTADSPKPFSRRVAWGKAMRELSSSVTKVAHMKSAADRAMINSSHERRARAASVRAGLIEGELLRAQ 1128
            MKRFQSMEAGACSNPEDVQPATKKAAQKL NFRG                 T  GVMTEAGLYPSSRYKQSRNMRQSGLGSSSRSR  PPT LNG  KNDKSQAPLQGPSN+QV DQSKNQRQ RGHH RRPSTAL TPSAPLAAQ TRDAPLSARVGLSAGNSFAEAAGAR L ASSP  +NNKSEDIAGSRAT LDIRRTQWVEG+SKQGVGGWLE DTAG+SQQHQGQR GAVSATGPET+D AEEG+      XXXXXXXXXXXX  C T      STADSPKPFSRRVAWGKAMRELSSSVTKVAHMK+AADRAMINSSHERRARAASVRAGLIEGELLRAQ
Sbjct:    1 MKRFQSMEAGACSNPEDVQPATKKAAQKLANFRG--------------CSSTASGVMTEAGLYPSSRYKQSRNMRQSGLGSSSRSRSRPPTRLNGRRKNDKSQAPLQGPSNNQVGDQSKNQRQQRGHHGRRPSTALETPSAPLAAQPTRDAPLSARVGLSAGNSFAEAAGARTLGASSPTCDNNKSEDIAGSRATILDIRRTQWVEGESKQGVGGWLEADTAGRSQQHQGQRVGAVSATGPETNDGAEEGDKEGRNGXXXXXXXXXXXXGRCKTSSTTSTSTADSPKPFSRRVAWGKAMRELSSSVTKVAHMKTAADRAMINSSHERRARAASVRAGLIEGELLRAQ 333
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1305.2502.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJ78_ECTSI1.480e-18386.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JK95_9PHAE1.040e-15582.71Reverse transcriptase domain-containing protein n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1305contigEcto-sp13_S_contig1305:387..4236 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1128
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_005060.1
Cds size1128
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462699.193747-CDS-Ecto-sp13_S_contig1305:386..5001681462699.193747-CDS-Ecto-sp13_S_contig1305:386..500Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1305 387..500 -
1681462699.2025747-CDS-Ecto-sp13_S_contig1305:872..16301681462699.2025747-CDS-Ecto-sp13_S_contig1305:872..1630Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1305 873..1630 -
1681462699.2106946-CDS-Ecto-sp13_S_contig1305:1927..19911681462699.2106946-CDS-Ecto-sp13_S_contig1305:1927..1991Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1305 1928..1991 -
1681462699.2187643-CDS-Ecto-sp13_S_contig1305:2329..24401681462699.2187643-CDS-Ecto-sp13_S_contig1305:2329..2440Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1305 2330..2440 -
1681462699.2266011-CDS-Ecto-sp13_S_contig1305:4155..42361681462699.2266011-CDS-Ecto-sp13_S_contig1305:4155..4236Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1305 4156..4236 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1305.2502.1prot_Ecto-sp13_S_contig1305.2502.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1305 387..4236 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1305.2502.1

>prot_Ecto-sp13_S_contig1305.2502.1 ID=prot_Ecto-sp13_S_contig1305.2502.1|Name=mRNA_Ecto-sp13_S_contig1305.2502.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=376bp
MAGGPTPPQSPARNGNKMSGAVSSSPRVRLTMKRFQSMEAGACSNPEDVQ
PATKKAAQKLTNFRGYLHKSSVAGCFVDLLEMTNEGVMTEAGLYPSSRYK
QSRNMRQSGLGSSSRSRPPTGLNGPNKNDKSQAPLQGPSNDQVEDQSKNQ
RQHRGHHRRRPSTALGTPSAPLAAQATRDAPLSARVGLSAGNSFAEAAGA
RILSASSPCHNNNKSEDIAGSRATTLDIRRTQWVEGDSKQGVGGWLETDT
AGQSQQHQGQREGAVSATGPETDDDAEEGEKEGRNGGGDDGSGGDHAGGR
CNTSSTTSTSTADSPKPFSRRVAWGKAMRELSSSVTKVAHMKSAADRAMI
NSSHERRARAASVRAGLIEGELLRAQ
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mRNA from alignment at Ecto-sp13_S_contig1305:387..4236-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1305.2502.1 ID=mRNA_Ecto-sp13_S_contig1305.2502.1|Name=mRNA_Ecto-sp13_S_contig1305.2502.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3850bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1305:387..4236- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCGGGGGTCCGACTCCCCCGCAATCCCCCGCCCGTAATGGTAACAA
AATGTCGGGAGCCGTCAGCAGCAGTCCCAGGGTGAGATTCCACACTGGAT
GCCGTTCCACGCACAGGGTACCAGTATTTGTGCTTTGACAAGGTCAATCA
TTCGTAGCTGGTCCATCGTACAAAGGGGGAGAGATTATCGAACAGCGACT
GTTTGTGTACAGGGTTTTAAAATGAGAGTTGAAGTTTGAGCAACGTAAAA
CAGGCAGATGTGCACACGGTACAAGTAACTCTGTTATGAAAAATAATACA
CGAACAGAAACACTGCCCATTCGAGATTCGAGATACACCCACAGCAGTCG
AACGGGATGTACTGCCTGTAGTGGCGTCTTTTCGGTGCGTGGAGGAAAAC
CGACTGGTTACTGTACTTATTTCGAGTCTTTTTAAGTCTACATACTGATG
ATTTTTATCAGTGATGCCAGCTGGTGCTAAGTACAACAACATCTGTAGGT
AGACCTACATTTTACAATACATCCCGTGTAGTTCTCTACTGCTGTGTCAA
CGACAACATATCGGGGAGAATCCCTCCGTCGTGTCTTGCGTTGTAAAATG
GAAACTTCACAGGGGACACGGCGCGGTGTTTATCTACAGCTTGCTGATTT
GTTAGATTTAAGGAATAATAGGGTTAGGGTTAGAGTTGTGGAACATGGAA
CGAAGGCCCGCTACAGCAGTAAATTACATTGTACTCGTTTTTCAAATCTA
CAGATTTTTTAATTTTACGGGCAGTACGTGTTTCTCTCCGTTTTTTTAAC
GTGCAAAACGTATTTGATCCTTTGGGGTAACGTATCAGTGATGCTTAGAT
AAGAATGGTACACCTGGTGCATGGTACGTAGGGCATAGCATTCAGTTTGT
ATCATGTTAGCTTGTTTCTTGCTATGCTTGGTGTTGGTAAACAACGTCAG
TAGAAGCACGGAAGTTTTAAAGTGCTAAACATCCAATGTGTCCCGTTGTT
GTCAACTTCCCTGGTGTTCCTCAGAGCGGTTTGCCGAGATATCTTAACGC
AACCATGTCGTAATCACGTTGTAGAGCATCCGTGATGAAGGTCAGCAGCA
GCAGCGAGTGGCAGTTGGTCTCTCCGTGTGGAGAAGTGGTACGGCGAAGG
ATACAACACGAAGAAATTACGCACCTGGATGCACAGCGATCAGCAGAGAA
GACGATGTGTGTCAGCCGCGAGGTCAATATGGGAGAGCACCTTTGCACGA
AACCCGATACAGATACATTAATTGACCACTACGGACGGACGTGGTGGCAA
ACACCGTCGGGTGGCCGCACGTCACTCACAACCCGACCAATGCAACGATC
TTGTCGAAACATGTACACACATATGCACCATTTTTCATCTATCACCGCCG
ACGGAACGAGCGTAGAGGTTAAGCATTGCCTCGCGGGTCCGATGTCCTGT
TGTTGCCACCATCGTTCACGACGCGGATATACGTTGCTGCACTAACGAAC
TGCCCGATATGGTCCTGAACGATCCTCTCCTTGTTGAATATCTTGTGTGT
AGCAGATCCTAGACAAAGCTATAGATTCTCGGGCCCGGGCCCTGTCTACC
CAGGAGCATTTTTCTTCTACAACGATGGCAAGGGAACGAACCCTCGACTG
TGTTCCGGCCGCCGTTCCAATACCCACCCAGTATCCTCCTCGACAACGTT
TTGGGTTTGTGTGTTTTGCCATATGTTGCTGTGAGCATTGCTTTCCATTC
TTCATGGTTCTACTGCATGTTGGACGTCTAAAACTTATCTCTCCAGGTTC
GACTGACGATGAAGAGATTTCAGAGTATGGAAGCGGGCGCTTGCAGCAAC
CCTGAAGACGTGCAACCGGCGACGAAAAAGGCGGCGCAAAAACTCACAAA
CTTCCGGGTGAGCTGGCTCCCTGGCCTGGTCGGTGTCCTCATAGAAGGAA
CCAATGTCGTTGCATGACCGTCCGTGTCTAAATAAAATGGACATGGTTCT
ATATTCATGTGTACTACATGTACTGTAGAAAATTTGAAGCGATTGGATAC
ACTAGTAGGGCTGTTCGTCTACCGCACCAGGTGGGATTTTTCAAGCTGGT
TGTCCTACTACCGAATAGTGCCTGGAACAGCCTACCCCGGGAACAGCCAT
ACGTTGTATTTGCACCATGACGCACCTGTCCGCTCATACGTACACAATTG
TTTACGCGCTAGATGGCCCTTGTTACCCGAACTGCAACACGTCAGGGCTA
CTTGCACAAGTCCTCCGTCGCCGGGTGCTTCGTTGACCTGCTGGAGATGA
CGAACGAAGGTGGGATGTACCCATCGTTGACTACAGGAGGGGGGCTCAAA
TACAATTCTTGTAAAACAACGCGCAGCTGCCAAAACTTGCTCTTGCTGTG
TGAACATGTGTTTGTGTTGCGCCGGAGTCACAGGTAGCAAACGCCGCAGG
CAGACGCAGCAGCACGCAAACATGTTGGCAGGCAGCGGGCCTGATTTCCG
TTCATGGGCTGAGTACCCAATGAACCCGCTGAAGGCAAGGCAATATGGAT
GTCTCCCTACCTTTTTTGTGATTGTGTGTTACCAAACCCGCCACAATACA
AACAAGGAGTAATGACGGAGGCCGGTCTGTATCCGTCTAGCCGCTACAAG
CAGTCCCGAAACATGCGACAATCGGGGCTCGGCTCCAGCTCCCGCTCCCG
GCCACCGACCGGTTTGAATGGCCCAAACAAGAACGACAAGAGCCAAGCAC
CGCTACAAGGCCCGTCAAACGATCAGGTCGAAGATCAAAGTAAGAACCAG
CGGCAACACCGGGGGCACCACAGACGGCGACCTTCGACGGCATTGGGAAC
CCCTTCTGCGCCCCTTGCGGCTCAGGCCACCCGCGACGCTCCGCTCTCGG
CCCGTGTGGGGTTGTCCGCTGGGAATAGCTTCGCGGAGGCGGCGGGGGCA
AGAATCTTGAGTGCTTCTTCTCCTTGCCACAACAACAACAAGAGCGAGGA
CATCGCTGGCAGCAGGGCTACTACTCTCGACATTCGACGCACGCAGTGGG
TGGAAGGAGACTCGAAGCAGGGTGTGGGGGGGTGGTTAGAGACGGACACA
GCGGGACAGTCTCAGCAGCACCAAGGGCAGCGTGAGGGGGCGGTGTCGGC
GACCGGTCCGGAAACAGACGATGATGCGGAGGAGGGAGAAAAGGAAGGGC
GCAACGGAGGCGGTGATGATGGAAGTGGTGGTGATCACGCGGGCGGCCGC
TGCAACACCAGTAGTACCACTAGCACGAGCACAGCAGATAGCCCGAAGCC
CTTTTCACGGAGAGTTGCGTGGGGGAAAGCCATGAGGGAGCTCTCATCTT
CCGTGACAAAAGTGGTGAGTTCTGGGGGTACGCTCTGGAACGGCGTCGCT
AGCATCTTGCCCCATCGTTTGTTGATCGAACAGATCGCAACTAGCACCTT
AGAAACAGCGAGGAAACTTCACCAGCAGTCTACACTGCTGCTGTTTCTTG
TGCCGAATATTGTTCAGTTCTTCTATCATAACCTGGTTTGACTAAACGTT
TGAACATCGTGCTTTTCAGCCATGCTTCCAGTGCGCAGGAGTCATATACT
GGTGCAACTGCTGTATATGTCCCCCAAACCTCAAGCCCAGAACGCCTCTT
AAGCCCCAGGTGCAGCTCTTCCTCCTTTGACCGATGACCACAAGTTATCG
TTGCCCTCATTCTGTCGAACTTGTTACCGCACCTAGGCGCACATGAAAAG
CGCCGCGGACAGGGCCATGATCAACAGCTCCCACGAGCGGCGCGCAAGGG
CGGCCAGCGTGAGGGCCGGGCTAATCGAGGGGGAACTGCTTCGGGCCCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1305:387..4236-

>mRNA_Ecto-sp13_S_contig1305.2502.1 ID=mRNA_Ecto-sp13_S_contig1305.2502.1|Name=mRNA_Ecto-sp13_S_contig1305.2502.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1128bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1305:387..4236- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCGGGGGTCCGACTCCCCCGCAATCCCCCGCCCGTAATGGTAACAA
AATGTCGGGAGCCGTCAGCAGCAGTCCCAGGGTTCGACTGACGATGAAGA
GATTTCAGAGTATGGAAGCGGGCGCTTGCAGCAACCCTGAAGACGTGCAA
CCGGCGACGAAAAAGGCGGCGCAAAAACTCACAAACTTCCGGGGCTACTT
GCACAAGTCCTCCGTCGCCGGGTGCTTCGTTGACCTGCTGGAGATGACGA
ACGAAGGAGTAATGACGGAGGCCGGTCTGTATCCGTCTAGCCGCTACAAG
CAGTCCCGAAACATGCGACAATCGGGGCTCGGCTCCAGCTCCCGCTCCCG
GCCACCGACCGGTTTGAATGGCCCAAACAAGAACGACAAGAGCCAAGCAC
CGCTACAAGGCCCGTCAAACGATCAGGTCGAAGATCAAAGTAAGAACCAG
CGGCAACACCGGGGGCACCACAGACGGCGACCTTCGACGGCATTGGGAAC
CCCTTCTGCGCCCCTTGCGGCTCAGGCCACCCGCGACGCTCCGCTCTCGG
CCCGTGTGGGGTTGTCCGCTGGGAATAGCTTCGCGGAGGCGGCGGGGGCA
AGAATCTTGAGTGCTTCTTCTCCTTGCCACAACAACAACAAGAGCGAGGA
CATCGCTGGCAGCAGGGCTACTACTCTCGACATTCGACGCACGCAGTGGG
TGGAAGGAGACTCGAAGCAGGGTGTGGGGGGGTGGTTAGAGACGGACACA
GCGGGACAGTCTCAGCAGCACCAAGGGCAGCGTGAGGGGGCGGTGTCGGC
GACCGGTCCGGAAACAGACGATGATGCGGAGGAGGGAGAAAAGGAAGGGC
GCAACGGAGGCGGTGATGATGGAAGTGGTGGTGATCACGCGGGCGGCCGC
TGCAACACCAGTAGTACCACTAGCACGAGCACAGCAGATAGCCCGAAGCC
CTTTTCACGGAGAGTTGCGTGGGGGAAAGCCATGAGGGAGCTCTCATCTT
CCGTGACAAAAGTGGCGCACATGAAAAGCGCCGCGGACAGGGCCATGATC
AACAGCTCCCACGAGCGGCGCGCAAGGGCGGCCAGCGTGAGGGCCGGGCT
AATCGAGGGGGAACTGCTTCGGGCCCAG
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