mRNA_Ecto-sp13_S_contig13048.2501.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig13048.2501.1 vs. uniprot
Match: D8LK32_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK32_ECTSI) HSP 1 Score: 269 bits (688), Expect = 2.730e-89 Identity = 134/160 (83.75%), Postives = 142/160 (88.75%), Query Frame = 1
Query: 1 RKMGDHGIAAQHLRQVVESLKRTGQGSNTSQPSMLEETTLLKQCPTTLFLYLMRFEHVRSGGRFVERKLSHHVDVPKSIDMAPYTRPPASSAGAPQPERYDLTGVVHHEGKTTKGGHYTAFVRLAGEEWRRYNDSKVTKVGYEDVLTENALILTYTRRSG 480
R+MGDHG AAQHLRQVVESLKRT Q + + S LEE T LKQCP T+ YL+RFEHVRSGG FVERKLSHHVDVPKSID+APYTRPPASSAG PQ ERYDLTGVVHHEG+TTK GHYTAFV LAGEEWRRY+DSKVTKVGYEDVLTENALILTYTRRSG
Sbjct: 15 REMGDHGRAAQHLRQVVESLKRTAQVGDVGR-STLEEKTSLKQCPPTILFYLIRFEHVRSGGTFVERKLSHHVDVPKSIDIAPYTRPPASSAGDPQSERYDLTGVVHHEGETTKTGHYTAFVHLAGEEWRRYDDSKVTKVGYEDVLTENALILTYTRRSG 173
BLAST of mRNA_Ecto-sp13_S_contig13048.2501.1 vs. uniprot
Match: A0A6H5KT93_9PHAE (USP domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT93_9PHAE) HSP 1 Score: 167 bits (423), Expect = 7.430e-47 Identity = 86/152 (56.58%), Postives = 106/152 (69.74%), Query Frame = 1
Query: 25 AAQHLRQVVESLKRTGQGSNTSQPSMLEETTLLKQCPTTLFLYLMRFEHVRSGGRFVERKLSHHVDVPKSIDMAPYTRPPASSAGAPQPERYDLTGVVHHEGKTTKGGHYTAFVRLAGEEWRRYNDSKVTKVGYEDVLTENALILTYTRRSG 480
AA+++R++ ESLK Q N S EE + LK+CP T+ LYLMRF + G KL+H V +PK +DMAPY PP S AGA QP+ YDLTGVVHH G+TT GHY AFVRL G+ WRRY+D+KVT+V LT+NALIL+YTRRSG
Sbjct: 210 AAKYVRRISESLKGKAQHDNDVGLSSREEQSWLKKCPRTVLLYLMRFAYTTRG-----EKLTHDVHIPKEMDMAPYIGPPTSRAGARQPDMYDLTGVVHHIGQTTNKGHYVAFVRLPGQWWRRYDDAKVTEVVASQALTKNALILSYTRRSG 356
BLAST of mRNA_Ecto-sp13_S_contig13048.2501.1 vs. uniprot
Match: D7FYB9_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYB9_ECTSI) HSP 1 Score: 164 bits (416), Expect = 4.050e-43 Identity = 86/152 (56.58%), Postives = 104/152 (68.42%), Query Frame = 1
Query: 25 AAQHLRQVVESLKRTGQGSNTSQPSMLEETTLLKQCPTTLFLYLMRFEHVRSGGRFVERKLSHHVDVPKSIDMAPYTRPPASSAGAPQPERYDLTGVVHHEGKTTKGGHYTAFVRLAGEEWRRYNDSKVTKVGYEDVLTENALILTYTRRSG 480
AA+++R++ ESLK Q + S +EE + LK+CP T+ LYLMRF + G KL H V +PK IDMAPY PP S AGA QP+ YDL GVVHH G+TT GHY AFVRL GE W RY+D+KVT V DV T+NALIL+YTRRSG
Sbjct: 759 AAEYVRRISESLKGKAQHDSNVGLSSMEEQSWLKKCPRTVLLYLMRFAYTTRG-----EKLIHDVYIPKEIDMAPYIGPPTSRAGARQPDMYDLNGVVHHIGQTTNKGHYVAFVRLPGEGWLRYDDAKVTGVTDSDVRTQNALILSYTRRSG 905
BLAST of mRNA_Ecto-sp13_S_contig13048.2501.1 vs. uniprot
Match: D7FSR8_ECTSI (Similar to deubiquitinating enzyme 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSR8_ECTSI) HSP 1 Score: 164 bits (416), Expect = 4.830e-43 Identity = 85/152 (55.92%), Postives = 105/152 (69.08%), Query Frame = 1
Query: 25 AAQHLRQVVESLKRTGQGSNTSQPSMLEETTLLKQCPTTLFLYLMRFEHVRSGGRFVERKLSHHVDVPKSIDMAPYTRPPASSAGAPQPERYDLTGVVHHEGKTTKGGHYTAFVRLAGEEWRRYNDSKVTKVGYEDVLTENALILTYTRRSG 480
AA+++R++ ESLK Q + S +EE + LK+CP T+ LYLMRF + G KL+H V +PK IDMAPY PP + AGA QP+ YDL GVVHH G+TT GHY AFVRL GE W RY+D+KVT V DV T+NALIL+YTRRSG
Sbjct: 1279 AAEYVRRISESLKGKAQHDSNVGLSSMEEQSWLKKCPRTVLLYLMRFAYTTRG-----EKLTHDVYIPKEIDMAPYIGPPTTRAGARQPDMYDLNGVVHHIGQTTNKGHYVAFVRLPGEGWLRYDDAKVTGVTDSDVRTQNALILSYTRRSG 1425
BLAST of mRNA_Ecto-sp13_S_contig13048.2501.1 vs. uniprot
Match: I1J4V4_SOYBN (Ubiquitin carboxyl-terminal hydrolase n=3 Tax=Glycine subgen. Soja TaxID=1462606 RepID=I1J4V4_SOYBN) HSP 1 Score: 89.4 bits (220), Expect = 6.410e-17 Identity = 52/144 (36.11%), Postives = 77/144 (53.47%), Query Frame = 1
Query: 49 VESLKRTGQGSNTSQPSMLEETTLLKQCPTTLFLYLMRFEHVRSGGRFVERKLSHHVDVPKSIDMAPYTRPPASSAGAPQ--PERYDLTGVVHHEGKTTKGGHYTAFVRLAGEEWRRYNDSKVTKVGYEDVLTENALILTYTRR 474
VE++ Q N + +E+ +L Q P+ +L RF ++ G VE K+ H+D P +D+ PYT GA P +YDL +V H G ++ GHY FVR A + W + +DS VT+V E VL++ A IL Y R+
Sbjct: 285 VENIDDNLQCDNCKEEVSMEKQLMLDQTPSVAAFHLKRF---KTDGILVE-KIDKHIDFPLELDLQPYTIKVMEDPGAENDVPLKYDLYAIVVHTGLSSTSGHYFCFVRSAPDTWHKLDDSMVTEVSVETVLSQEAYILFYARQ 424
BLAST of mRNA_Ecto-sp13_S_contig13048.2501.1 vs. uniprot
Match: A0A4P1QRH2_LUPAN (Ubiquitin carboxyl-terminal hydrolase n=3 Tax=Lupinus angustifolius TaxID=3871 RepID=A0A4P1QRH2_LUPAN) HSP 1 Score: 88.6 bits (218), Expect = 1.160e-16 Identity = 50/123 (40.65%), Postives = 72/123 (58.54%), Query Frame = 1
Query: 103 LEETTLLKQCPTTLFLYLMRFEHVRSGGRFVERKLSHHVDVPKSIDMAPYTRPPASSAGAPQPERYDLTGVVHHEGKTTKGGHYTAFVRLAGEEWRRYNDSKVTKVGYEDVLTENALILTYTR 471
LE+ LL Q P+ +L RF ++ G FVE KL HVD P +D+ PY+ S+ + +P +YDL VV H G + GHY +VR A + W R +DS+VT+V + VL++ A IL Y +
Sbjct: 319 LEKQLLLDQTPSVAAFHLKRF---KTDGTFVE-KLDKHVDFPLELDLQPYS---VSNQNSIEPMKYDLYAVVVHLGLSATSGHYYCYVRSAPDVWHRLDDSQVTRVSADYVLSQEAYILFYAQ 434
BLAST of mRNA_Ecto-sp13_S_contig13048.2501.1 vs. uniprot
Match: K7LF25_SOYBN (Ubiquitin carboxyl-terminal hydrolase n=3 Tax=Glycine subgen. Soja TaxID=1462606 RepID=K7LF25_SOYBN) HSP 1 Score: 88.2 bits (217), Expect = 1.610e-16 Identity = 51/144 (35.42%), Postives = 77/144 (53.47%), Query Frame = 1
Query: 49 VESLKRTGQGSNTSQPSMLEETTLLKQCPTTLFLYLMRFEHVRSGGRFVERKLSHHVDVPKSIDMAPYTRPPASSAGAPQ--PERYDLTGVVHHEGKTTKGGHYTAFVRLAGEEWRRYNDSKVTKVGYEDVLTENALILTYTRR 474
VE++ + N + +E+ +L Q P+ L+L RF ++ G VE K+ H+D P +D+ PYT A P +YDL +V H G ++ GHY FVR A + W + +DS VTKV + VL++ A IL Y R+
Sbjct: 303 VENIDENFRCDNCKEEVSMEKQLMLDQTPSVAALHLKRF---KTNGILVE-KIDKHIDFPLELDLQPYTIKVMEDLVAENDVPLKYDLYAIVVHTGLSSTSGHYFCFVRSAPDTWHKLDDSMVTKVSVDSVLSQEAYILFYARQ 442
BLAST of mRNA_Ecto-sp13_S_contig13048.2501.1 vs. uniprot
Match: UPI0010A2E6A3 (ubiquitin carboxyl-terminal hydrolase 20-like isoform X1 n=2 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A2E6A3) HSP 1 Score: 87.0 bits (214), Expect = 4.090e-16 Identity = 50/124 (40.32%), Postives = 73/124 (58.87%), Query Frame = 1
Query: 103 LEETTLLKQCPTTLFLYLMRFEHVRSGGRFVERKLSHHVDVPKSIDMAPYTRPPASSAGAPQPERYDLTGVVHHEGKTTKGGHYTAFVRLAGEEWRRYNDSKVTKVGYEDVLTENALILTYTRR 474
+E+ +L Q P+ +L RF ++ G +VE K+ +HVD P +D+ PYT S+ A RYDL +V H G ++ GHY FVR A + W R +DSKVT+V + VL++ A IL Y R+
Sbjct: 413 MEKRLILDQTPSVATFHLKRF---KTDGIYVE-KIDNHVDFPLELDLLPYTNCNKSNNEA---LRYDLYAIVVHVGLSSTSGHYFCFVRTAPDLWYRLDDSKVTRVAGDFVLSQEAYILLYARQ 529
BLAST of mRNA_Ecto-sp13_S_contig13048.2501.1 vs. uniprot
Match: A0A6P4D6U4_ARADU (Ubiquitin carboxyl-terminal hydrolase n=5 Tax=Arachis TaxID=3817 RepID=A0A6P4D6U4_ARADU) HSP 1 Score: 85.5 bits (210), Expect = 1.370e-15 Identity = 49/124 (39.52%), Postives = 71/124 (57.26%), Query Frame = 1
Query: 103 LEETTLLKQCPTTLFLYLMRFEHVRSGGRFVERKLSHHVDVPKSIDMAPYTRPPASSAGAPQPERYDLTGVVHHEGKTTKGGHYTAFVRLAGEEWRRYNDSKVTKVGYEDVLTENALILTYTRR 474
+E+ +L Q P+ +L RF ++ G +VE K+ HV+ P +D+ PYT S P +Y+L VV H G ++ GHY +FVR A + W + +DSKVT V E VL+E A IL Y R+
Sbjct: 333 MEKQIMLDQTPSIATFHLKRF---KTDGTYVE-KIDKHVNFPLELDLQPYT---ISHQNNNVPLKYELYAVVVHIGFSSTSGHYFSFVRSAPDTWHKLDDSKVTMVSEESVLSEEAYILFYARQ 449
BLAST of mRNA_Ecto-sp13_S_contig13048.2501.1 vs. uniprot
Match: A0A444WVV1_ARAHY (Ubiquitin carboxyl-terminal hydrolase n=3 Tax=Arachis hypogaea TaxID=3818 RepID=A0A444WVV1_ARAHY) HSP 1 Score: 85.5 bits (210), Expect = 1.440e-15 Identity = 49/124 (39.52%), Postives = 71/124 (57.26%), Query Frame = 1
Query: 103 LEETTLLKQCPTTLFLYLMRFEHVRSGGRFVERKLSHHVDVPKSIDMAPYTRPPASSAGAPQPERYDLTGVVHHEGKTTKGGHYTAFVRLAGEEWRRYNDSKVTKVGYEDVLTENALILTYTRR 474
+E+ +L Q P+ +L RF ++ G +VE K+ HV+ P +D+ PYT S P +Y+L VV H G ++ GHY +FVR A + W + +DSKVT V E VL+E A IL Y R+
Sbjct: 333 MEKQIMLDQTPSIATFHLKRF---KTDGTYVE-KIDKHVNFPLELDLQPYT---ISHQNNNVPLKYELYAVVVHIGFSSTSGHYFSFVRSAPDTWHKLDDSKVTMVSEESVLSEEAYILFYARQ 449 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13048.2501.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig13048.2501.1 >prot_Ecto-sp13_S_contig13048.2501.1 ID=prot_Ecto-sp13_S_contig13048.2501.1|Name=mRNA_Ecto-sp13_S_contig13048.2501.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=162bp MGDHGIAAQHLRQVVESLKRTGQGSNTSQPSMLEETTLLKQCPTTLFLYLback to top mRNA from alignment at Ecto-sp13_S_contig13048:1435..3372- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig13048.2501.1 ID=mRNA_Ecto-sp13_S_contig13048.2501.1|Name=mRNA_Ecto-sp13_S_contig13048.2501.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1938bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13048:1435..3372- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13048:1435..3372- >mRNA_Ecto-sp13_S_contig13048.2501.1 ID=mRNA_Ecto-sp13_S_contig13048.2501.1|Name=mRNA_Ecto-sp13_S_contig13048.2501.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=486bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13048:1435..3372- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |