mRNA_Ecto-sp13_S_contig13045.2500.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13045.2500.1
Unique NamemRNA_Ecto-sp13_S_contig13045.2500.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig13045.2500.1 vs. uniprot
Match: A0A6H5JAW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAW5_9PHAE)

HSP 1 Score: 597 bits (1538), Expect = 1.230e-214
Identity = 306/321 (95.33%), Postives = 311/321 (96.88%), Query Frame = 1
Query:    1 MSASLDKQLLVEVLKGNERGVEEQLDLGASLDGFDTRKPLFVAARHGRAGVVTLLAKRGAELEATCPRDVRDDRGMYVYSSGSRAVHAAVYAGRVDSLRALLDAGADPNAADATGHTPLMQACRLFGAADRYVVVRELLRGGADPARQSDDGMIALHYASFRDDTDVIRLLLPKAMATLNQDTGYGGTPLCCAASGGHEESVRCLLSFGASDNALWSKKGASALVGAVQEGRQEIVRILLDHGVDAVGGLGAVPKAIWTATRKGHAKILHMLLAVAGEETRRQWATMPFNESTLLHCATSVGSLSVTSVILSAGADETARD 963
            MS SLDKQLLVEVLKGNERGVEEQLDLGASLDGFD  KPLF AARHGRAGVVTLLAKRGAELEATCPRDVRDDRGMYVYSSGS AVHAAVYA RVDSLRALLDAGADPNAADATGHTPLMQACRLFGAADRYVVVRELLRGGADPARQSD+GMIALHYASFRDDTDVI LLLPKAMATLNQDTGYGGTPLCCAASGG++ESVRCLLSFGASDNALWSKKGASALVGAVQEGRQEIVRILLDHG+DAVGGLGAVPKAIWTATRKGHAKILHMLLAVAGEETRRQWATMP+NESTLLHCATSVGSLSV S ILSAGADE ARD
Sbjct:    1 MSTSLDKQLLVEVLKGNERGVEEQLDLGASLDGFDIWKPLFAAARHGRAGVVTLLAKRGAELEATCPRDVRDDRGMYVYSSGSPAVHAAVYARRVDSLRALLDAGADPNAADATGHTPLMQACRLFGAADRYVVVRELLRGGADPARQSDNGMIALHYASFRDDTDVIGLLLPKAMATLNQDTGYGGTPLCCAASGGYKESVRCLLSFGASDNALWSKKGASALVGAVQEGRQEIVRILLDHGMDAVGGLGAVPKAIWTATRKGHAKILHMLLAVAGEETRRQWATMPYNESTLLHCATSVGSLSVMSAILSAGADERARD 321          
BLAST of mRNA_Ecto-sp13_S_contig13045.2500.1 vs. uniprot
Match: A0A6H5JSC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSC7_9PHAE)

HSP 1 Score: 213 bits (543), Expect = 1.450e-60
Identity = 139/334 (41.62%), Postives = 186/334 (55.69%), Query Frame = 1
Query:   13 LDKQLLVEVLKGNERGVEEQLDLGASLDGFDTR--KPLFVAARHGRAGVVTLLAKRGAELEATCPRDVRDDRGMYVYSSGSRAVHAAVYAGRVDSLRALLDAGADPNAADATGHTPLMQACRLFGAA---DRYVVVRELLRGGADPARQSDDGMIALHYASFRDDTDVIRLLLPKAMATLNQDTGYGGTPLCCAASGGHEESVRCLLSFGASDNALWSKKGASALVGAVQEGRQEIVRILL-DHGVDAVGGLGAVPKAIWTAT--RKGHAKILHMLLAVAGEETRRQWATMPFNESTLLHCATSVGSLSVTSVILSAGADETARDQDGDFAKDV 990
            L  QLL  + + NE GVE  L  GAS+DG      +P+  AA  G  G+  LL KR A ++     D+R   G+ V   G RA+H A+    VD  R LL AGADP++A+  G TPLM  C L  +A    R V+ RE                 AL +A+ RD TD+I +LL KA  TLN+ T  G TPL  AA  G  ++V  LLS GA      ++K    LV AV+E  QE+VR+LL D G++A+ G   +P+A+  A   RKG A I+ MLL+  G E    WA   + E  +LHCA S G++S T V+L+AGADETA ++DG  A++V
Sbjct:  118 LAAQLLAYIRQRNEAGVERTLAAGASVDGSSELDWRPIIAAAASGSVGMADLLIKRQANVDLGSLNDLRCSDGLEVLGKGVRALHVAINHYHVDVFRLLLKAGADPDSANGKGLTPLMLTCILEDSARGEQRAVMAREXXXXXXXXXXXXXXXKTALGFAAARDQTDLIDILLQKAPTTLNRATPDGLTPLYAAAMSGKGKAVSHLLSAGARQPPASAEKDMCPLVAAVRENHQEVVRVLLTDRGMEAIDGPDVIPRAVGAAASARKGRASIVRMLLSAEGHEREGHWARCRYKEDPVLHCAVSFGNISATRVLLAAGADETAENEDGRPAREV 451          
BLAST of mRNA_Ecto-sp13_S_contig13045.2500.1 vs. uniprot
Match: D8LSK8_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSK8_ECTSI)

HSP 1 Score: 208 bits (530), Expect = 9.880e-59
Identity = 137/334 (41.02%), Postives = 186/334 (55.69%), Query Frame = 1
Query:   13 LDKQLLVEVLKGNERGVEEQLDLGASLDGFDTR--KPLFVAARHGRAGVVTLLAKRGAELEATCPRDVRDDRGMYVYSSGSRAVHAAVYAGRVDSLRALLDAGADPNAADATGHTPLMQACRLFGAA---DRYVVVRELLRGGADPARQSDDGMIALHYASFRDDTDVIRLLLPKAMATLNQDTGYGGTPLCCAASGGHEESVRCLLSFGASDNALWSKKGASALVGAVQEGRQEIVRILL-DHGVDAVGGLGAVPKAIWTAT--RKGHAKILHMLLAVAGEETRRQWATMPFNESTLLHCATSVGSLSVTSVILSAGADETARDQDGDFAKDV 990
            L  QLL  + + NE GVE  L  GAS+DG      +P+  AA   + G+  LL KR A+++     D+R   G+ V   G RA+H A+    VD  R LL AGADP++A+  G TPLM  C L  +A    R V+ RE                 AL +A+ RD T++I +LL KA  TLN+ T  G TPL  AA  G  ++V  LLS GA      ++K    LV AV+E  QE+VR+LL D G+ A+GG   +P+A+  A   RKG A I+ MLL+  G E    WA   + E  +LH A S G++S T V+L+AGADETA ++DG  A++V
Sbjct:  110 LAAQLLAYIRQRNEAGVERTLAAGASVDGSSELDWRPIIAAAASCKVGMAELLIKRKADVDLGSLNDLRCSDGLEVLGKGVRALHVAINHYNVDVFRLLLKAGADPDSANGKGLTPLMLTCILEDSARGEQRAVMAREXXXXXXXXXXXXXXXKTALGFAAARDQTNLIDILLQKAPTTLNRATPDGLTPLYAAAMSGKGKAVSHLLSAGARQPPASAEKDMCPLVAAVRENHQEVVRVLLTDRGMKAIGGADVIPRAVGAAASARKGRASIVRMLLSAEGHEREGHWARCRYKEDPVLHSAVSFGNISATRVLLAAGADETAENEDGRPAREV 443          
BLAST of mRNA_Ecto-sp13_S_contig13045.2500.1 vs. uniprot
Match: A0A6H5JK53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK53_9PHAE)

HSP 1 Score: 186 bits (472), Expect = 3.490e-52
Identity = 128/331 (38.67%), Postives = 188/331 (56.80%), Query Frame = 1
Query:    4 SASLDKQLLVEVLKGNERGVEEQLDLGASLDGFDTRK--PLFVAARHGRAGVVTLLAKRGAELEATCPRDVRDDRGMYVYSSGSRAVHAAVYAGRVDSLRALLDAGADPNAADATGHTPLMQACRLFGAADR-YVVVRELLRGGADPARQSDDGMIALHYASFRDDTDVIRLLLPKAMATLNQDTGYGGTPLCCAASGGHEESVRCLLSFGASDNALWSKKGASALVGAVQEGRQEIVRILLDHGVDAVGGLGAVPKAIWTATRKGHAKILHMLLAVAGEETRRQWATMPFNESTLLHCATSVGSLSVTSVILSAGADETARDQDGDFAKD 987
            +A+ D++LL+EV KGN  GV++ L  GA++DG    +  P+  AAR+G A ++ LL  +GA+LE               + +GSRA+HAA+      +L  LL+AGAD N+ D  G TPLM    L   AD   ++ REL + GA P  ++ DGM A+H A+   + +V+ ++L    + LN     G TP+  AA  G   +V  LLS GASD  L   +  +A++ A   G   +VR++L+HG++ VGGLGA+P +I  A +   AKIL ML++  GEE RR+WA     + T LH A +  S+    V+LSAGA ET  +  G  A +
Sbjct:    4 AAAGDRRLLMEVEKGNLSGVKKLLAGGANVDGSRELEYPPIMGAARNGNAAMLKLLISKGADLETEAR-----------FPAGSRAIHAAISGENPTALSVLLEAGADFNSRDGAGETPLM----LTALADTGALLARELFKVGASPFVKNADGMSAMHVAAGLGNLEVMTVILTNTPSALNVLDNKGFTPMGIAALRGQRRAVFHLLSAGASD--LGVDEQNAAILWACDGGHPRMVRMMLEHGINRVGGLGAIPNSIGVAVQGRQAKILEMLVSAEGEENRRKWAECRLRDGTPLHLAAAWVSVRAIHVLLSAGARETLPNGYGKLASE 317          
BLAST of mRNA_Ecto-sp13_S_contig13045.2500.1 vs. uniprot
Match: D8LDZ2_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDZ2_ECTSI)

HSP 1 Score: 181 bits (460), Expect = 3.260e-50
Identity = 126/321 (39.25%), Postives = 170/321 (52.96%), Query Frame = 1
Query:   10 SLDKQLLVEVLKGNERGVEEQLDLGASLDGFD--TRKPLFVAARHGRAGVVTLLAKRGAELEATCPRDVRDD--RGMYVYSSGSRAVHAAVYAGRVDSLRALLDAGADPNAADATGHTPLMQACRLFGAADRYVVVRELLRGGADPARQSDDGMI--ALHYASFRDDTDVIRLLLPKAMATLNQDTGYGGTPLCCAASGGHEESVRCLLSFGASDNALWSKKGASALVGAVQEGRQEIVRILLDHGVDAVGGLGAVPKAIWTATRKGHAKILHMLLAVAGEETRRQWATMPFNEST-LLHCATSVGSLSVTSVILSAGADE 951
            S + +LL  V KG+ +G  E L  GA+ DG       PLF+AA  GR  ++ LL   GA+L+ T   D   D   G   +  G+  +H A+    +D+LR LL AGADPN AD  G TPLM  C  +  A  YV+                      ALH A+  +  D++ LLL +A +T+N     G T LC AAS G E +V CLLS GA DN      G  +L+ AV+ G +++VR+LLD GV AVGG  A+  A+  +  K   +IL MLL V GE+ R +WA +   + T  LH A +  SL   S++L AGADE
Sbjct:    5 SKELRLLHHVEKGSLQGAIEMLKAGANADGTSEAATSPLFLAANRGRIDILKLLIDNGADLDGTSSLDKFADGFTGNLPFEGGTTPLHGALAGENLDALRLLLLAGADPNLADGKGCTPLMMTCLKYFRAKNYVLTAXXXXXXXXXXXXXXXXXXXTALHVAATFNAPDLLGLLLSRAPSTVNLPNKKGVTALCYAASEGMEVAVSCLLSAGARDNPSLFANGIGSLLIAVELGHEQVVRVLLDRGVQAVGGELAMSYALRRSILKRFPRILQMLLDVEGEQKRVKWARLRHTDGTPALHLAAACESLVAASILLQAGADE 325          
BLAST of mRNA_Ecto-sp13_S_contig13045.2500.1 vs. uniprot
Match: D7G4M4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4M4_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 1.020e-40
Identity = 111/306 (36.27%), Postives = 163/306 (53.27%), Query Frame = 1
Query:   67 EQLDLGASLDGFDTRKPLFVAARHGRAGVVTLLAKRGAELEATCPRDVRDDRGMYVYSSGSRAVHAAVYAGRVDSLRALLDAGADPNAADATGHTPLMQACRLFGAADR-YVVVRELLRGGADPARQSDDGMIALHYASFRDDTDVIRLLLPKAMATLNQDTGYGGTPLCCAASGGHEESVRCLLSFGASDNALWSKKGASALVGAVQEGRQEIVRILLDHGVDAVGGLGAVPKAIWTATRKGHAKILHMLLAVAGEETRRQWATMPFNESTLLHCATSVGSLSVTSVILSAGADETARDQDGDFA 981
            +++  G S  G   R  +     +G   ++ LL  +GA LE               + +GSRA+HAA+      +L  LL+AGAD N+ D  G TPLM    L   AD   ++ REL + GA P  ++ DGM A+H A+   + +V+ ++L    + LN     G TP+  AA  G   +V  LLS GASD  L   +  +A+  A   G   +VR++L+HG++ VGGLGA+P +I  A +   AKIL ML++  GE+ RR+WA     + T LH A +  S+ V  V+LSAGA ET  ++ G  A
Sbjct:   82 QEIARGRSKRGRIARAAIPPNCGNGNTAMLKLLISKGANLETEAR-----------FPAGSRAIHAAISGENPTALCVLLEAGADFNSRDGAGETPLM----LTALADTGALLARELFKVGASPFVKNADGMSAMHVAAGLGNLEVMTVILTNTPSVLNVLDNKGFTPMGIAALRGQRRAVFHLLSAGASD--LGVDEQNAAIFWACDGGHPRMVRMMLEHGINRVGGLGAIPNSIGVAVQGRQAKILEMLVSAEGEDNRRKWAECRLRDGTPLHLAAAWVSVRVMHVLLSAGARETLPNRYGKLA 370          
BLAST of mRNA_Ecto-sp13_S_contig13045.2500.1 vs. uniprot
Match: D8LMA9_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMA9_ECTSI)

HSP 1 Score: 152 bits (383), Expect = 7.500e-40
Identity = 113/318 (35.53%), Postives = 162/318 (50.94%), Query Frame = 1
Query:   73 LDLGASLDGFDTR--KPLFVAARHGRAGVVTLLAKRGAELEATCPRD---VRDDRGMYVYSSGSRAVHAAVYAGRVDSLRALLDAGADPNAADATGHTPLMQACRLFGAAD-RYVVVRELLRGGADPARQSDDGMIALHYASFRDDTDVIRLLLPKAMATLNQDTGYGGTPLCCAASGGHEESVRCLLSFGASDNALWSKKGASALVGAVQEGRQEIVRILLDHGVDAVGGLGAVPKAIWTATRKGHAKILHMLLAVAGEETRRQWA--------------TMPFNESTLL-------HCATSVGSLSVTSVILSAGA 945
            L+ GAS+  F     +P+ VA  +G   ++  L   GA+ EA C  D          + Y +G  A++ A   G   +L  LL  GA+PNA D+ G TP+M  C        +  ++R LL+ GAD A +++ G +A+H A+ R D  V+ LLL  A +TLN  T  G TPL  AA  G+E ++  L S GASD+  W+  G +AL  AV  G    VR LL++G+DAVGGL  + +AI  +   G    L MLL V GE+ +  WA              ++PF+ + +L       H A    S+    V+LSAGA
Sbjct:    2 LEEGASVHDFGDAVVRPIAVATDYGLIDIIKALVATGADTEAPCWSDKDGAWKGNPEWSYRNGFTALYIAPAVGNAGALLVLLQLGANPNATDSDGGTPIMVTCGTGSVTSTKLTMMRSLLKAGADLAVENELGGLAIHIAAGRCDAQVVALLLSMAPSTLNNATHNGLTPLAAAAEKGNESTMSLLFSEGASDSLPWATTGITALHKAVIVGMGTSVRFLLENGLDAVGGLPGIAEAIRISVWFGCIDGLEMLLNVHGEKKQEFWAKHYVFGVQDDSLLGSVPFSITAILCEWYPILHYAAKHYSIPALHVLLSAGA 319          
BLAST of mRNA_Ecto-sp13_S_contig13045.2500.1 vs. uniprot
Match: A0A2N2F6R4_9BACT (Uncharacterized protein n=1 Tax=Candidatus Dependentiae bacterium HGW-Dependentiae-1 TaxID=2013760 RepID=A0A2N2F6R4_9BACT)

HSP 1 Score: 81.6 bits (200), Expect = 2.200e-13
Identity = 103/356 (28.93%), Postives = 141/356 (39.61%), Query Frame = 1
Query:   43 KGNERGVEEQLDLGASLDGFDTR--KPLFVAARHGRAGVVTLLAKRGAELEATCPRDVRDDRGMYVYSSGSR---AVHAAVYAGRVDSLRALLDAGADPNAADATGHTPLMQACRLFG--------AADRYVV-------------------------VRELLRGGADPARQSDDGMIALHYASFRDDTDVIRLLLPKAMATLNQDTGYGGTPLCCAASGGHEESVRCLLSFGASDNALWSKKGASALVGAVQEGRQEIVRILLDHGVDAVGGLGAVPKAIWTATRKGHA---KILHMLLAVAGEETRRQWATMPFNE--STLLHCATSVGSLSVTSVILSAGADETARDQDGDFA 981
            +G     +E L+ GA+L   + +   PL  AA  G  GV+ LL K+  EL     +D    R  +V    +     +H AVYA +  +LR LL AGADP      G  PL  A  L G         AD+ VV                            LL  GADP    D+    L+ A   DD  ++R+L+  A+A    D               H+  +       A D  L     A+AL  A   G      +LL+HG DA     A    +  A R G A    ++H+LL+   +         P NE   T LH A   G +     +LSAGAD+T ++ DGD A
Sbjct:  316 RGKTAITQELLNAGATLYVVNAKGQSPLHAAAVGGHKGVMDLLLKKAEEL---AKKDKNFSRAEFVNQKDNEDQAPIHCAVYAKQSGTLRQLLAAGADPVLEGKAGALPLHVAA-LQGDVEIIQLLLADKRVVDTINSRAYKGMTSLAAALYYKHQAAAITLLNAGADPLVADDENFTTLNCAVVNDDAVMVRMLID-AVAKKRGDV--------------HKFVM-------ARDTVLQ----ATALHSAASMGLIMCASVLLEHGADANAHNRAKVTPLHIAARTGDAGRSMLVHVLLSYKADPNAMSAIEQPKNEPNGTPLHWAAQHGQVETVKALLSAGADQTIKNADGDTA 641          
BLAST of mRNA_Ecto-sp13_S_contig13045.2500.1 vs. uniprot
Match: D8LME9_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LME9_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 1.890e-10
Identity = 39/82 (47.56%), Postives = 47/82 (57.32%), Query Frame = 1
Query:  124 VAARHGRAGVVTLLAKRGAELEATCPRDVRDDRGMYVYSSGSRAVHAAVYAGRVDSLRALLDAGADPNAADATGHTPLMQAC 369
            VAA  G+   V  L  RGA L++   RDV    G  +   GS+A+HAAV+ G    L  LL  GA+PNAAD  G TPLM AC
Sbjct:    2 VAAGLGKVSFVEFLVARGAGLDSRTCRDVPRPEGGIILRMGSQAIHAAVHGGSPGVLYVLLRLGANPNAADDDGETPLMIAC 83          
BLAST of mRNA_Ecto-sp13_S_contig13045.2500.1 vs. uniprot
Match: A0A8J9UWK9_BRAAE (Hypothetical protein n=1 Tax=Brassicogethes aeneus TaxID=1431903 RepID=A0A8J9UWK9_BRAAE)

HSP 1 Score: 72.0 bits (175), Expect = 4.650e-10
Identity = 77/293 (26.28%), Postives = 124/293 (42.32%), Query Frame = 1
Query:  115 PLFVAARHGRAGVVTLLAKRGAELEATCPRDVRDDRGMYVYSSGSRAVHAAVYAGRVDSLRALLDAGADPNAADATGHTPLMQACRLFGAADRYVVVRELLRGGADP-ARQSDDGMIALHYASFRDDTDVIRLLLPKAMATLNQDTGYGGTPLCCAASGGHEESVRCLLSFGASDNALWSKKGASALVGAVQEGRQEIVRILLDHGVDA----VGGLGAVPKAIWTATRKGHAKILHMLLAV--AGEETRRQWATMPFNESTLLHCATSVGSLSVTSVILSAGADETARDQDG 972
            PL  A  +    +   L   GA++     +D R             A+H A   G V+    L+  GAD NA D  G++PLM A       +    V  L+  GAD   R S D   ALH A+   + ++  +L+    A +N     G +PL  A    H E+   L++ G   N   SK   +AL  A   G  ++  +L+ +G D     + G   +  A  T   +    +++    V   G + +R          T+LH A   G++++ +V++S GAD  A+D +G
Sbjct: 3731 PLIFAVDNNHTKITEYLINHGADVNLRGSKDNRT------------ALHVAGLTGNVEMANVLVSNGADINAQDINGYSPLMFAVYK----NHTETVEFLINQGADVNLRGSKDNRTALHVAAATGNIEMSNVLVSNG-ADINAQDINGYSPLMFAVDNNHPETAEFLINQGVDVNLRGSKDNRTALHVAAATGNVKMANVLVSNGADINAQDINGYWPLMFAFITNQTETAEFLINQGADVNLGGNKDKR----------TVLHEAAFTGNVTMANVLVSNGADLNAQDING 3996          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13045.2500.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JAW5_9PHAE1.230e-21495.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSC7_9PHAE1.450e-6041.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSK8_ECTSI9.880e-5941.02Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JK53_9PHAE3.490e-5238.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDZ2_ECTSI3.260e-5039.25Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
D7G4M4_ECTSI1.020e-4036.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LMA9_ECTSI7.500e-4035.53Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A2N2F6R4_9BACT2.200e-1328.93Uncharacterized protein n=1 Tax=Candidatus Depende... [more]
D8LME9_ECTSI1.890e-1047.56Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A8J9UWK9_BRAAE4.650e-1026.28Hypothetical protein n=1 Tax=Brassicogethes aeneus... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13045contigEcto-sp13_S_contig13045:3403..4392 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score212.2
Seed ortholog evalue3.6e-52
Seed eggNOG ortholog2880.D8LSK8
Model size990
KEGG koko:K10380
KEGG Pathwayko04624,ko05205,map04624,map05205
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Cds size990
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462699.0656528-CDS-Ecto-sp13_S_contig13045:3402..43921681462699.0656528-CDS-Ecto-sp13_S_contig13045:3402..4392Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13045 3403..4392 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13045.2500.1prot_Ecto-sp13_S_contig13045.2500.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13045 3403..4392 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13045.2500.1

>prot_Ecto-sp13_S_contig13045.2500.1 ID=prot_Ecto-sp13_S_contig13045.2500.1|Name=mRNA_Ecto-sp13_S_contig13045.2500.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=330bp
MSASLDKQLLVEVLKGNERGVEEQLDLGASLDGFDTRKPLFVAARHGRAG
VVTLLAKRGAELEATCPRDVRDDRGMYVYSSGSRAVHAAVYAGRVDSLRA
LLDAGADPNAADATGHTPLMQACRLFGAADRYVVVRELLRGGADPARQSD
DGMIALHYASFRDDTDVIRLLLPKAMATLNQDTGYGGTPLCCAASGGHEE
SVRCLLSFGASDNALWSKKGASALVGAVQEGRQEIVRILLDHGVDAVGGL
GAVPKAIWTATRKGHAKILHMLLAVAGEETRRQWATMPFNESTLLHCATS
VGSLSVTSVILSAGADETARDQDGDFAKDV
back to top

mRNA from alignment at Ecto-sp13_S_contig13045:3403..4392-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13045.2500.1 ID=mRNA_Ecto-sp13_S_contig13045.2500.1|Name=mRNA_Ecto-sp13_S_contig13045.2500.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=990bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13045:3403..4392- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTGCTTCCTTGGACAAGCAGCTACTGGTTGAAGTGCTGAAAGGAAA CGAGAGAGGCGTCGAAGAACAACTCGACCTGGGGGCAAGCCTAGACGGCT TCGACACAAGGAAGCCGCTGTTCGTTGCGGCTAGACACGGGCGCGCCGGC GTCGTAACCTTACTCGCTAAGAGGGGCGCCGAACTAGAAGCCACTTGTCC GCGCGACGTGCGGGATGACCGGGGGATGTACGTGTACTCGAGCGGGTCGC GCGCGGTTCATGCTGCTGTGTACGCCGGACGGGTGGATTCGCTCCGCGCC CTGCTCGATGCCGGGGCGGACCCGAACGCCGCGGACGCCACCGGCCACAC GCCGCTCATGCAGGCGTGCAGGTTATTCGGCGCTGCGGACCGCTACGTGG TAGTTCGCGAGCTGCTGCGGGGAGGTGCCGATCCCGCGCGCCAGAGCGAC GATGGCATGATCGCGTTGCACTACGCGTCGTTCAGAGACGACACGGACGT CATTCGGTTGCTCCTGCCGAAAGCGATGGCAACGCTCAACCAAGACACAG GGTATGGGGGAACGCCGCTGTGTTGCGCCGCGTCCGGCGGGCACGAGGAA TCCGTACGGTGTCTACTCTCTTTCGGGGCGAGCGACAACGCGCTTTGGTC GAAGAAGGGCGCAAGCGCGCTAGTCGGGGCTGTCCAGGAAGGCAGGCAGG AGATAGTCCGCATCCTTCTCGACCATGGAGTGGACGCGGTCGGGGGGCTG GGCGCGGTGCCGAAAGCCATTTGGACCGCAACCCGGAAAGGCCACGCGAA GATCCTACACATGCTGCTGGCCGTGGCGGGAGAGGAAACGCGGCGACAGT GGGCAACGATGCCCTTCAACGAATCCACCTTGCTCCACTGCGCCACCTCA GTCGGCTCACTTTCCGTGACAAGCGTGATTCTCTCGGCTGGCGCGGATGA GACAGCGAGGGATCAGGACGGAGATTTTGCGAAGGACGTT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13045:3403..4392-

>mRNA_Ecto-sp13_S_contig13045.2500.1 ID=mRNA_Ecto-sp13_S_contig13045.2500.1|Name=mRNA_Ecto-sp13_S_contig13045.2500.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=990bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13045:3403..4392- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTGCTTCCTTGGACAAGCAGCTACTGGTTGAAGTGCTGAAAGGAAA
CGAGAGAGGCGTCGAAGAACAACTCGACCTGGGGGCAAGCCTAGACGGCT
TCGACACAAGGAAGCCGCTGTTCGTTGCGGCTAGACACGGGCGCGCCGGC
GTCGTAACCTTACTCGCTAAGAGGGGCGCCGAACTAGAAGCCACTTGTCC
GCGCGACGTGCGGGATGACCGGGGGATGTACGTGTACTCGAGCGGGTCGC
GCGCGGTTCATGCTGCTGTGTACGCCGGACGGGTGGATTCGCTCCGCGCC
CTGCTCGATGCCGGGGCGGACCCGAACGCCGCGGACGCCACCGGCCACAC
GCCGCTCATGCAGGCGTGCAGGTTATTCGGCGCTGCGGACCGCTACGTGG
TAGTTCGCGAGCTGCTGCGGGGAGGTGCCGATCCCGCGCGCCAGAGCGAC
GATGGCATGATCGCGTTGCACTACGCGTCGTTCAGAGACGACACGGACGT
CATTCGGTTGCTCCTGCCGAAAGCGATGGCAACGCTCAACCAAGACACAG
GGTATGGGGGAACGCCGCTGTGTTGCGCCGCGTCCGGCGGGCACGAGGAA
TCCGTACGGTGTCTACTCTCTTTCGGGGCGAGCGACAACGCGCTTTGGTC
GAAGAAGGGCGCAAGCGCGCTAGTCGGGGCTGTCCAGGAAGGCAGGCAGG
AGATAGTCCGCATCCTTCTCGACCATGGAGTGGACGCGGTCGGGGGGCTG
GGCGCGGTGCCGAAAGCCATTTGGACCGCAACCCGGAAAGGCCACGCGAA
GATCCTACACATGCTGCTGGCCGTGGCGGGAGAGGAAACGCGGCGACAGT
GGGCAACGATGCCCTTCAACGAATCCACCTTGCTCCACTGCGCCACCTCA
GTCGGCTCACTTTCCGTGACAAGCGTGATTCTCTCGGCTGGCGCGGATGA
GACAGCGAGGGATCAGGACGGAGATTTTGCGAAGGACGTT
back to top