mRNA_Ecto-sp13_S_contig13042.2497.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13042.2497.1
Unique NamemRNA_Ecto-sp13_S_contig13042.2497.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13042.2497.1 vs. uniprot
Match: D8LI38_ECTSI (Fibronectin type-III domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI38_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 2.300e-6
Identity = 24/26 (92.31%), Postives = 25/26 (96.15%), Query Frame = -1 
Query:  170 TAPLPVPRAPEGSPGTHAVTLRFIRP 247
            TAPLPVPRAPEGSPGTHAVTLRF+ P
Sbjct:  732 TAPLPVPRAPEGSPGTHAVTLRFLPP 757
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13042.2497.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LI38_ECTSI2.300e-692.31Fibronectin type-III domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13042contigEcto-sp13_S_contig13042:1527..3024 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size247
Hectar predicted targeting categoryother localisation
Exons2
Cds size180
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462698.900895-UTR-Ecto-sp13_S_contig13042:1526..15931681462698.900895-UTR-Ecto-sp13_S_contig13042:1526..1593Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13042 1527..1593 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462698.909546-CDS-Ecto-sp13_S_contig13042:1593..15951681462698.909546-CDS-Ecto-sp13_S_contig13042:1593..1595Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13042 1594..1595 -
1681462698.9180105-CDS-Ecto-sp13_S_contig13042:2846..30241681462698.9180105-CDS-Ecto-sp13_S_contig13042:2846..3024Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13042 2847..3024 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13042.2497.1prot_Ecto-sp13_S_contig13042.2497.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13042 1594..3024 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13042.2497.1

>prot_Ecto-sp13_S_contig13042.2497.1 ID=prot_Ecto-sp13_S_contig13042.2497.1|Name=mRNA_Ecto-sp13_S_contig13042.2497.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=60bp
EILVFGIFRLGCEYHNGLGWGAPGRRPIRTQREETIEDNPINTRKGTSGN
GLISLQSAE*
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mRNA from alignment at Ecto-sp13_S_contig13042:1527..3024-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13042.2497.1 ID=mRNA_Ecto-sp13_S_contig13042.2497.1|Name=mRNA_Ecto-sp13_S_contig13042.2497.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1498bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13042:1527..3024- (Ectocarpus species13 EcNAP12_S_4_19m)
GAAATCCTTGTGTTTGGCATCTTCCGCCTCGGTTGCGAGTACCACAACGG
GCTCGGATGGGGCGCTCCAGGGAGACGTCCTATTCGTACACAAAGAGAAG
AAACCATCGAAGATAATCCCATTAACACCCGGAAGGGTACTTCGGGCAAT
GGCTTGATTTCCTTACAATCGGCCGAATGTGAGTTCTCGTAGTACAAGAT
ACAAGCATTGCTCACCATGTTTCACATTTTCCCACGAGGTATTAGAGGAA
ACACTACGGGAATTGTTCTTCGTTGCGTGCTACACGTGGCTAGTGCTGGT
ACTACACTACCACCAGCCCCTAATAGGCTAACCAATGTCCCGCACTGGTT
GAAATGATTATGTTCCTCCTTCTAACGAGTGAACTTGCTCGTTGTGGGGT
GTGGCATGCCTGAAAACCGCATGGCACGGAGACAAAGCGCGTATAAACCA
ACGCCATACAAATATTGCATGGACGGACAGGTAAAAAGTGAAGAACAGAA
ACAAAGCAAGATGTACTTTGTTGGCGGCGTTGAATGTTTCGGGGTGTCAA
ACCCACAGCATGCCACGCCTTGGGTTTGATCCTCACCCAACATCGTTCTG
GGCGCAAACGCGAAACTGGTACGCGACTCCCGGCACGAGGTGGTCCACTT
TCACCGCCACCGATTGCGGCTCCGTGTCGTGAACGGACACGTCCAGCCTT
GGCGCTGGGGCCTGCACCATGCCCACCGCCTGCCACTTGCTCAGGACGTG
TTCCCCGCTCGGTCGGGACATGACGTGATACCACGAAACCGGAGACCCCT
AGTAGCAGTGTCACCATTTTTTTTCCGCGTGTAGGTTGTTCATGGCAGAG
CGAGGGGACGGGGTGGGGCGATCACAAGCATTCGTTCAGTTACATATCAA
TGACGTTGTTGGTTATGGAGCTGTTCACAGGGCGGGAGGGGGGTAGGGGG
GTTGACAGAAGATTCCCCAACCAAAGAAGAAACAAAGCTTCAAAGAAACG
CGTTGCGGTGCATCTGGCGTGTCTTACAGCTACTACTCTAGCTGTATTTT
CGCGAGGCCGGAAGAAGAAATACACTCGCACGACAACGACCATCGATACG
CAAAGAGGAACGAACGAACGAACGTGATTTCACAGGTGTTTCATCGAATG
GGGCAGCATCATTTTCCTCGTCGGTACAAAACCAGATGAGACCTGAAATC
TCCCACACCCAACCCCCCCCCCGTCCCCCCCCCTACTCCCCGTCAGTAGC
TCCCGACAGTACGAGGAACAGAGAGAAAAAAAAATTGACTACTGAACCGA
CGAATGTATGCATGCATGCGTTCAGACTAGGGCAGAAGCAAGCTTCAAAG
ACAAAACTGCGTATTTTCGAGCTTTTGGACAATGCCAATCTTGCCGATCT
TTCCTCACCCCATGGTCGGGAGGCGGCAGGAAACGGAGCGTGACTGCGTG
CGTCCCTGGAGACCCTTCCGGCGCCCTGGGAACTGGCAACGGGGCCGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13042:1527..3024-

>mRNA_Ecto-sp13_S_contig13042.2497.1 ID=mRNA_Ecto-sp13_S_contig13042.2497.1|Name=mRNA_Ecto-sp13_S_contig13042.2497.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=180bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13042:1527..3024- (Ectocarpus species13 EcNAP12_S_4_19m)
GAAATCCTTGTGTTTGGCATCTTCCGCCTCGGTTGCGAGTACCACAACGG
GCTCGGATGGGGCGCTCCAGGGAGACGTCCTATTCGTACACAAAGAGAAG
AAACCATCGAAGATAATCCCATTAACACCCGGAAGGGTACTTCGGGCAAT
GGCTTGATTTCCTTACAATCGGCCGAATGA
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