prot_Ecto-sp13_S_contig1304.2495.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1304.2495.1
Unique Nameprot_Ecto-sp13_S_contig1304.2495.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length112
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1304.2495.1 vs. uniprot
Match: D8LCN1_ECTSI (Breast cancer 2 like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCN1_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 1.490e-40
Identity = 84/112 (75.00%), Postives = 87/112 (77.68%), Query Frame = 0 
Query:    1 GELGKHESSSTNGTKTAAAPSEPIRDVGFRTARGRPVTVSAEALVRVEHLFR-EEEGSSLAGGRHAXXXXXXXXXXXXXXKRPDRRGGTTKLSSSGRGTGVAVGSCNVADDS 111
            GELGKHESSSTNG +T AA S P RDVGFRTARGRPV VSAEALVRVEHLFR EEEGSSLAGGRHA              K PDRRGGTTK+S  GR TG+AVGSCNVADDS
Sbjct: 1541 GELGKHESSSTNGAETTAASSAPTRDVGFRTARGRPVAVSAEALVRVEHLFRGEEEGSSLAGGRHAVAASFSGGTRPAAAKGPDRRGGTTKVSPRGRETGMAVGSCNVADDS 1652
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BLAST of mRNA_Ecto-sp13_S_contig1304.2495.1 vs. uniprot
Match: A0A6H5JH10_9PHAE (BRCA-2_helical domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH10_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 3.080e-36
Identity = 76/112 (67.86%), Postives = 80/112 (71.43%), Query Frame = 0 
Query:    1 GELGKHESSSTNGTKTAAAPSEPIRDVGFRTARGRPVTVSAEALVRVEHLFREEEGSSLAGGRHAXXXXXXXXXXXXXXKRPDRRGGTTKLSSSGRGTGVAVGSCNVADDSS 112
            GELGKHE SST+  +T  APSE  RD GFR ARG PV VSAEALVRVEHLFR  EGSSLAGGRHA              K PDRRGGTT +S SGRG G+AVGSCNV DDSS
Sbjct: 1517 GELGKHEISSTSDAETTVAPSELTRDAGFRMARGGPVAVSAEALVRVEHLFRGREGSSLAGGRHAAAASFSGGTRPTAGKGPDRRGGTTNVSPSGRGAGIAVGSCNVPDDSS 1628
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1304.2495.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCN1_ECTSI1.490e-4075.00Breast cancer 2 like n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5JH10_9PHAE3.080e-3667.86BRCA-2_helical domain-containing protein n=1 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002093BRCA2 repeatPFAMPF00634BRCA2coord: 28..55
e-value: 1.3E-6
score: 27.9
IPR002093BRCA2 repeatPROSITEPS50138BRCA2_REPEATcoord: 22..56
score: 10.454

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1304contigEcto-sp13_S_contig1304:7344..7679 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1304.2495.1mRNA_Ecto-sp13_S_contig1304.2495.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1304 7344..7679 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1304.2495.1 ID=prot_Ecto-sp13_S_contig1304.2495.1|Name=mRNA_Ecto-sp13_S_contig1304.2495.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=112bp
GELGKHESSSTNGTKTAAAPSEPIRDVGFRTARGRPVTVSAEALVRVEHL
FREEEGSSLAGGRHAAAASFSGGTRPAAAKRPDRRGGTTKLSSSGRGTGV
AVGSCNVADDSS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002093BRCA2_repeat