mRNA_Ecto-sp13_S_contig13038.2493.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13038.2493.1
Unique NamemRNA_Ecto-sp13_S_contig13038.2493.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13038.2493.1 vs. uniprot
Match: A0A6H5KSV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSV1_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 5.830e-35
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1 
Query:    1 HNDLCEVCSHGGDLLCCDTCSLVFHTKCHRPELKEVPAGDWNCQFCVADSSHVPP 165
            HNDLCEVCSHGGDLLCCDTCSLVFHTKCHRPELKEVPAGDWNCQFCVADSSHVPP
Sbjct:  143 HNDLCEVCSHGGDLLCCDTCSLVFHTKCHRPELKEVPAGDWNCQFCVADSSHVPP 197
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BLAST of mRNA_Ecto-sp13_S_contig13038.2493.1 vs. uniprot
Match: D7FP41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP41_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 1.480e-34
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 1 
Query:    1 HNDLCEVCSHGGDLLCCDTCSLVFHTKCHRPELKEVPAGDWNCQFCVADSSHVPP 165
            HNDLCEVCSHGGDLLCCDTCSLVFHTKCHRPELKEVPAGDWNCQFCVADS+HVPP
Sbjct:  109 HNDLCEVCSHGGDLLCCDTCSLVFHTKCHRPELKEVPAGDWNCQFCVADSTHVPP 163
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BLAST of mRNA_Ecto-sp13_S_contig13038.2493.1 vs. uniprot
Match: A0A7S3M305_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M305_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.950e-19
Identity = 30/49 (61.22%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:    1 HNDLCEVCSHGGDLLCCDTCSLVFHTKCHRPELKEVPAGDWNCQFCVAD 147
            H+++CEVC  GGDLLCCDTC+LVFH KC RP+L  +P G W+C  C+ D
Sbjct:   69 HDEVCEVCEKGGDLLCCDTCTLVFHLKCFRPKLSGIPKGSWSCPHCIID 117
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BLAST of mRNA_Ecto-sp13_S_contig13038.2493.1 vs. uniprot
Match: K0SZ98_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SZ98_THAOC)

HSP 1 Score: 85.1 bits (209), Expect = 8.500e-18
Identity = 33/57 (57.89%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:    1 HNDLCEVCSHGGDLLCCDTCSLVFHTKCHRPELKEVPAGDWNCQFCVADSSHVPPGT 171
            HNDLCE C  GGDLLCC TC+LVFH +C RP+L  +P  DW+C +C+A S  +P  T
Sbjct: 1762 HNDLCETCGLGGDLLCCSTCNLVFHLECTRPKLATIPENDWSCAYCIA-SGEIPSKT 1817
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BLAST of mRNA_Ecto-sp13_S_contig13038.2493.1 vs. uniprot
Match: A0A7S2E5U7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2E5U7_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 5.410e-17
Identity = 31/48 (64.58%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:    1 HNDLCEVCSHGGDLLCCDTCSLVFHTKCHRPELKEVPAGDWNCQFCVA 144
            HNDLCEVC+ GGDLLCC TC+LVFH  C RP LK++P  +W+C +CV+
Sbjct:  280 HNDLCEVCNTGGDLLCCATCNLVFHQACSRPVLKKLPPDNWSCAYCVS 327
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BLAST of mRNA_Ecto-sp13_S_contig13038.2493.1 vs. uniprot
Match: A0A7S4QH92_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QH92_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 7.530e-17
Identity = 31/48 (64.58%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:    1 HNDLCEVCSHGGDLLCCDTCSLVFHTKCHRPELKEVPAGDWNCQFCVA 144
            HNDLCEVC+ GGDLLCC TC+LVFH  C RP LK++P  +W+C +CV+
Sbjct:  280 HNDLCEVCNTGGDLLCCATCNLVFHQACSRPVLKKLPPDNWSCAYCVS 327
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BLAST of mRNA_Ecto-sp13_S_contig13038.2493.1 vs. uniprot
Match: A0A7S3LRW5_9STRA (Hypothetical protein n=2 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LRW5_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 8.020e-15
Identity = 28/59 (47.46%), Postives = 38/59 (64.41%), Query Frame = 1 
Query:    1 HNDLCEVCSHGGDLLCCDTCSLVFHTKCHRPELKEVPAGDWNCQFCVADSSHVPPGTLL 177
            HND+CE C+  G+++CCD+C+LVFH  C  P L ++P  DW+C  CV   S    G LL
Sbjct:  637 HNDICEACNQAGEVICCDSCNLVFHNGCLNPPLIKIPEDDWSCPVCVEKFSSYTNGALL 695
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BLAST of mRNA_Ecto-sp13_S_contig13038.2493.1 vs. uniprot
Match: A0A7S1CBY0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CBY0_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 1.160e-14
Identity = 28/56 (50.00%), Postives = 34/56 (60.71%), Query Frame = 1 
Query:    1 HNDLCEVCSHGGDLLCCDTCSLVFHTKCHRPELKEVPAGDWNCQFCVADSSHVPPG 168
            HND CEVC + GDLLCCD+CS V+H  C +P L   P G+W C  C  +    P G
Sbjct:  106 HNDTCEVCENAGDLLCCDSCSCVYHKDCLQPPLASTPRGEWRCPQCRLEHGKGPVG 161
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BLAST of mRNA_Ecto-sp13_S_contig13038.2493.1 vs. uniprot
Match: A0A0S7LL60_9TELE (BPTF (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7LL60_9TELE)

HSP 1 Score: 70.5 bits (171), Expect = 4.750e-14
Identity = 26/48 (54.17%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:    1 HNDLCEVCSHGGDLLCCDTCSLVFHTKCHRPELKEVPAGDWNCQFCVA 144
            ++D C VC   GDLLCC+TCS V+H +C +P L+EVP  +W C+ CVA
Sbjct:   78 YDDHCRVCHRLGDLLCCETCSAVYHLECVKPPLEEVPEDEWQCEVCVA 125
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BLAST of mRNA_Ecto-sp13_S_contig13038.2493.1 vs. uniprot
Match: A0A3B4WIL7_SERLL (PHD-type domain-containing protein n=1 Tax=Seriola lalandi dorsalis TaxID=1841481 RepID=A0A3B4WIL7_SERLL)

HSP 1 Score: 70.5 bits (171), Expect = 4.750e-14
Identity = 27/53 (50.94%), Postives = 32/53 (60.38%), Query Frame = 1 
Query:    1 HNDLCEVCSHGGDLLCCDTCSLVFHTKCHRPELKEVPAGDWNCQFCVADSSHV 159
            H D CEVC  GG+LLCCDTC+  +H  C  P L E+P G+W C  C    S V
Sbjct:   44 HQDYCEVCQQGGELLCCDTCTSSYHIHCLNPPLPEIPNGEWLCPRCTVRCSAV 96
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13038.2493.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSV1_9PHAE5.830e-35100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FP41_ECTSI1.480e-3498.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3M305_9STRA1.950e-1961.22Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
K0SZ98_THAOC8.500e-1857.89Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S2E5U7_9STRA5.410e-1764.58Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S4QH92_9STRA7.530e-1764.58Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S3LRW5_9STRA8.020e-1547.46Hypothetical protein n=2 Tax=Aplanochytrium stocch... [more]
A0A7S1CBY0_9STRA1.160e-1450.00Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A0S7LL60_9TELE4.750e-1454.17BPTF (Fragment) n=1 Tax=Poeciliopsis prolifica Tax... [more]
A0A3B4WIL7_SERLL4.750e-1450.94PHD-type domain-containing protein n=1 Tax=Seriola... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13038contigEcto-sp13_S_contig13038:1323..1514 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score131.7
Seed ortholog evalue1.2e-28
Seed eggNOG ortholog2880.D7FP41
Model size192
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.methylated histone binding
EggNOG OGsKOG1473@1,KOG1473@2759
Cds size192
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462698.5899951-CDS-Ecto-sp13_S_contig13038:1322..15141681462698.5899951-CDS-Ecto-sp13_S_contig13038:1322..1514Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13038 1323..1514 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13038.2493.1prot_Ecto-sp13_S_contig13038.2493.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13038 1323..1514 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13038.2493.1

>prot_Ecto-sp13_S_contig13038.2493.1 ID=prot_Ecto-sp13_S_contig13038.2493.1|Name=mRNA_Ecto-sp13_S_contig13038.2493.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=64bp
HNDLCEVCSHGGDLLCCDTCSLVFHTKCHRPELKEVPAGDWNCQFCVADS
SHVPPGTLLSGDH*
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mRNA from alignment at Ecto-sp13_S_contig13038:1323..1514-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13038.2493.1 ID=mRNA_Ecto-sp13_S_contig13038.2493.1|Name=mRNA_Ecto-sp13_S_contig13038.2493.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=192bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13038:1323..1514- (Ectocarpus species13 EcNAP12_S_4_19m)
CATAACGATCTGTGCGAGGTCTGCTCGCACGGGGGCGACCTGCTGTGCTG
CGACACGTGCTCGTTGGTGTTCCACACAAAGTGCCACCGTCCGGAGCTCA
AGGAGGTGCCTGCGGGAGACTGGAACTGCCAGTTCTGCGTGGCGGATAGC
AGTCACGTCCCACCTGGTACGCTACTTTCGGGTGATCACTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13038:1323..1514-

>mRNA_Ecto-sp13_S_contig13038.2493.1 ID=mRNA_Ecto-sp13_S_contig13038.2493.1|Name=mRNA_Ecto-sp13_S_contig13038.2493.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=192bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13038:1323..1514- (Ectocarpus species13 EcNAP12_S_4_19m)
CATAACGATCTGTGCGAGGTCTGCTCGCACGGGGGCGACCTGCTGTGCTG
CGACACGTGCTCGTTGGTGTTCCACACAAAGTGCCACCGTCCGGAGCTCA
AGGAGGTGCCTGCGGGAGACTGGAACTGCCAGTTCTGCGTGGCGGATAGC
AGTCACGTCCCACCTGGTACGCTACTTTCGGGTGATCACTGA
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