mRNA_Ecto-sp13_S_contig13036.2492.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13036.2492.1
Unique NamemRNA_Ecto-sp13_S_contig13036.2492.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13036.2492.1 vs. uniprot
Match: A0A6H5JI95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI95_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 2.440e-29
Identity = 123/154 (79.87%), Postives = 124/154 (80.52%), Query Frame = 1 
Query:    1 MVSATPTTAPSGRPKRAAASKAEHVFRSLALTGAVQSGACVVDSEQXXXXXXXXXXXXXXXXXXXXXXXXXXXEEASTHHCERGEGTELEAPIAGEGGNHVYEAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXSASSRGAKKRGKLKQETAAVR 462
            MVSATPTTAPSGRPKRAAASKAEHVFRSLALTGAVQSG CVVDSEQ XXXXXXXXXXXXXXXXXXXXXXXX   EASTH  E GEGTELEA IA EGG + YE                XXXXXXXXXXXX  SASSRGAKKRGKLKQETAAVR
Sbjct:    1 MVSATPTTAPSGRPKRAAASKAEHVFRSLALTGAVQSGGCVVDSEQQXXXXXXXXXXXXXXXXXXXXXXXX---EASTHQGEGGEGTELEASIAREGGINDYEV-----RGEGVSAAGGXXXXXXXXXXXXKRSASSRGAKKRGKLKQETAAVR 146
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13036.2492.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JI95_9PHAE2.440e-2979.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13036contigEcto-sp13_S_contig13036:537..998 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size462
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionZinc finger, FYVE/PHD-type
Ec32 orthologEc-09_003920.2
Cds size462
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462698.558832-CDS-Ecto-sp13_S_contig13036:536..9981681462698.558832-CDS-Ecto-sp13_S_contig13036:536..998Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13036 537..998 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13036.2492.1prot_Ecto-sp13_S_contig13036.2492.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13036 537..998 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13036.2492.1

>prot_Ecto-sp13_S_contig13036.2492.1 ID=prot_Ecto-sp13_S_contig13036.2492.1|Name=mRNA_Ecto-sp13_S_contig13036.2492.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=154bp
MVSATPTTAPSGRPKRAAASKAEHVFRSLALTGAVQSGACVVDSEQQQEQ
QQQEQQEQQEQPTESNKAPAGGGEEASTHHCERGEGTELEAPIAGEGGNH
VYEAGGGGVSAAGGGEGSGGGSGNHRQKQTKRRSASSRGAKKRGKLKQET
AAVR
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mRNA from alignment at Ecto-sp13_S_contig13036:537..998+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13036.2492.1 ID=mRNA_Ecto-sp13_S_contig13036.2492.1|Name=mRNA_Ecto-sp13_S_contig13036.2492.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=462bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13036:537..998+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTATCGGCCACGCCGACAACGGCACCCTCAGGTCGACCCAAGCGAGC
AGCGGCAAGCAAGGCGGAGCACGTGTTCCGTTCCCTGGCGCTAACGGGCG
CGGTACAGAGCGGCGCGTGCGTGGTGGACTCCGAGCAGCAGCAGGAGCAG
CAGCAGCAGGAGCAGCAGGAGCAGCAGGAGCAGCCGACAGAGTCAAACAA
GGCGCCAGCAGGCGGCGGCGAAGAGGCATCAACACACCATTGTGAAAGAG
GAGAGGGCACGGAACTGGAGGCTCCGATAGCCGGGGAAGGGGGGAATCAC
GTCTACGAAGCCGGAGGGGGAGGCGTCTCTGCAGCTGGTGGCGGCGAAGG
TAGCGGCGGCGGCAGCGGGAACCACAGGCAGAAGCAGACGAAAAGAAGGA
GCGCGAGCAGCAGGGGAGCAAAGAAGCGGGGCAAGCTCAAGCAAGAGACC
GCAGCGGTCCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13036:537..998+

>mRNA_Ecto-sp13_S_contig13036.2492.1 ID=mRNA_Ecto-sp13_S_contig13036.2492.1|Name=mRNA_Ecto-sp13_S_contig13036.2492.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=462bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13036:537..998+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTATCGGCCACGCCGACAACGGCACCCTCAGGTCGACCCAAGCGAGC
AGCGGCAAGCAAGGCGGAGCACGTGTTCCGTTCCCTGGCGCTAACGGGCG
CGGTACAGAGCGGCGCGTGCGTGGTGGACTCCGAGCAGCAGCAGGAGCAG
CAGCAGCAGGAGCAGCAGGAGCAGCAGGAGCAGCCGACAGAGTCAAACAA
GGCGCCAGCAGGCGGCGGCGAAGAGGCATCAACACACCATTGTGAAAGAG
GAGAGGGCACGGAACTGGAGGCTCCGATAGCCGGGGAAGGGGGGAATCAC
GTCTACGAAGCCGGAGGGGGAGGCGTCTCTGCAGCTGGTGGCGGCGAAGG
TAGCGGCGGCGGCAGCGGGAACCACAGGCAGAAGCAGACGAAAAGAAGGA
GCGCGAGCAGCAGGGGAGCAAAGAAGCGGGGCAAGCTCAAGCAAGAGACC
GCAGCGGTCCGG
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